Non-Coding RNA Search

Ss1.1-LyN1-MLN01D090063.5

Sequence:


               
               TTTTTCCCCCTTGACATTCTAGCTGCTGTCACTACATTTTTCTGGGGAATTCTCGACGAG
ATTTTACGGGTCCTTCCATGCTGTTCTTTCTGTGGTTTCCTTGTTTCTTTTTGCGACCAA
GTTCCAGATGGCTCAGCAGTGCTACCAGAATGAATATTTTGACAGATTGCTGATTGCTTG
CAAACCCTGTCGCCTTCGATGCTCTAATACCCCGCCTGTAACGTGTCAGCATTATTGTAA
TACAATGAAAGGAACAAATGTGATTCTCTGGACCTGTTTGGGCCTGAGCTTGATAGTTTC
TTTGACAGTTTTCATCTTGATGTTCTTGCTAAGGAAGAGGAGCTCCGGACCACTGAGGGA
CGAACTTAGAAACCCAGGATCGGCTCCCCAGAAGGGTGCTGGCGCTGACCTGGGCAATGG
CAGCGAGGGCCAGATGGGTGCGGAAACGCTGCTTTCGAGAGGCCTGGAGTACACGGTAGA
GGAATGTACGTGTGAAGACTGTGTCCAGAGCGAACCAAAGGTCGATTCCGACCATTTCTT
TCCACTCCCAGCCATGGAGGAAGGCGCCACCATCCTTGTCACCACGAAAACAAACGGCTA
CTGCAGCAGCCTGCTAGCTGCCGAGAGTGCCCTGGCATTGGAGAAATCAATTTCTACCAG
ATGATTAACACACCGTTTCGATGGCAGAGAGCTACTTGGAAAGTCTTTTGTTGGAAGGAA
AGGATGATGTGTCGTCTCTTTAGGACGCCTGACTCCTCGGTGGGTGGTATAGATCTTGGT
CCTCTAATTCTGGAAAACCTTTATGTTTCCTTCCACCTTATTGATGGGAACTTAGCTGTG
GAAACTTCGTCGGTTTCATGATTAAATTGACCATTGTCAGAGCAGTAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTCCCCCTTGACATTCTAGCTGCTGTCACTACATTTTTCTGGGGAATTCTCGACGAG
ATTTTACGGGTCCTTCCATGCTGTTCTTTCTGTGGTTTCCTTGTTTCTTTTTGCGACCAA
GTTCCAGATGGCTCAGCAGTGCTACCAGAATGAATATTTTGACAGATTGCTGATTGCTTG
CAAACCCTGTCGCCTTCGATGCTCTAATACCCCGCCTGTAACGTGTCAGCATTATTGTAA
TACAATGAAAGGAACAAATGTGATTCTCTGGACCTGTTTGGGCCTGAGCTTGATAGTTTC
TTTGACAGTTTTCATCTTGATGTTCTTGCTAAGGAAGAGGAGCTCCGGACCACTGAGGGA
CGAACTTAGAAACCCAGGATCGGCTCCCCAGAAGGGTGCTGGCGCTGACCTGGGCAATGG
CAGCGAGGGCCAGATGGGTGCGGAAACGCTGCTTTCGAGAGGCCTGGAGTACACGGTAGA
GGAATGTACGTGTGAAGACTGTGTCCAGAGCGAACCAAAGGTCGATTCCGACCATTTCTT
TCCACTCCCAGCCATGGAGGAAGGCGCCACCATCCTTGTCACCACGAAAACAAACGGCTA
CTGCAGCAGCCTGCTAGCTGCCGAGAGTGCCCTGGCATTGGAGAAATCAATTTCTACCAG
ATGATTAACACACCGTTTCGATGGCAGAGAGCTACTTGGAAAGTCTTTTGTTGGAAGGAA
AGGATGATGTGTCGTCTCTTTAGGACGCCTGACTCCTCGGTGGGTGGTATAGATCTTGGT
CCTCTAATTCTGGAAAACCTTTATGTTTCCTTCCACCTTATTGATGGGAACTTAGCTGTG
GAAACTTCGTCGGTTTCATGATTAAATTGACCATTGTCAGAGCAGTAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|56967253|pdb|1XU2|T

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|56967253|pdb|1XU2|T

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               2-254, gnl|bosTau2|chr25 (10346487-10346737)
               

               
               2-254, gnl|Hg17|chr16 (11966570-11966820)
               

               
               2-254, gnl|Mm7|chr16_random (442807-442581)
               


               
               375-871, gnl|bosTau2|chr25 (10349288-10349789)
               

               
               375-871, gnl|Hg17|chr16 (11968925-11969412)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-254, gnl|bosTau2|chr25 (10346487-10346737)
               

               
               2-254, gnl|Hg17|chr16 (11966570-11966820)
               

               
               2-254, gnl|Mm7|chr16_random (442807-442581)
               


               
               375-871, gnl|bosTau2|chr25 (10349288-10349789)
               

               
               375-871, gnl|Hg17|chr16 (11968925-11969412)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               cje (0.826173)
               

               
               cmu (0.55918)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               lin (0.145603)
               

               
               clu (0.119646)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.826173)
               

               
               cmu (0.55918)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               lin (0.145603)
               

               
               clu (0.119646)

	2-254, gnl\|bosTau2\|chr25 (10346487-10346737)
	2-254, gnl\|Hg17\|chr16 (11966570-11966820)
	2-254, gnl\|Mm7\|chr16_random (442807-442581)

	375-871, gnl\|bosTau2\|chr25 (10349288-10349789)
	375-871, gnl\|Hg17\|chr16 (11968925-11969412)

	cje (0.826173)
	cmu (0.55918)
	ill (0.175593)
	rec (0.17307)
	duo (0.172801)
	lin (0.145603)
	clu (0.119646)