Ss1.1-LyN1-MLN01D090085.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCTTCAGTTATTCAGTCAGATTGGACCCTGTAAAAGCTGTAAAATGATAACAGAGCATAC AAGCAATGACCCATATTGCTTTGTGGAATTTTATGAACACAGAGATGCAGCTGCTGCATT AGCTGCTATGAATGGGAGAAAAATTTTGGGAAAGGAGGTCAAAGTAAACTGGGCAACAAC ACCAAGTAGCCAGAAAAAAGATACTTCCAATCATTTCCACGTGTTTGTTGGGGATTTGAG TCCAGAAATTACAACAGAAGATATCAAATCAGCATTTGCCCCCTTTGGTAAAATATCGGA TGCCCGAGTAGTTAAAGATATGGCAACTGGAAAATCTAAAGGCTATGGCTTTGTATCTTT TTATAACAAACTGGATGCAGAAAATGCAATTGTGCATATGGGAGGTCAGTGGTTGGGTGG TCGTCAAATCAGAACCAATTGGGCCACACGTAAACCACCTGCACCTAAAAGTACACAAGA AAATAACACTAAGCAGTTGAGATTTGAAGATGTAGTAAACCAGTCAAGTCCAAAAAATTG TACTGTGTACTGTGGAGGAATTGCTTCTGGGTTAACAGATCAGCTTATGAGACAGACATT CTCACCATTTGGGCAAATTATGGAAATCAGAGTTTTTCCGGAGAAGGGCTATTCATTTGT CAGATTTTCCACCCACGAAAGTGCAGCCCATGCCATTGTCTCAGTGAATGGTACTACGAT CGAAGGACATGTTGTTAAATGCTATTGGGGTAAAGAATCTCCTGATATGACTAAAAACTT TTCCTAGGTCGACTATAGTCAGTGGGGCCAGTGGAGCCAAGTTTATGGAAATCCACAACA GTATGGACAGTATATGGCAAATGGGTGGCAAGTACCACCTTACGGAGTATACGGGCAGCC ATGGAATCAACAAGGATTTGGAGTAGATCAATCACCTTCAGCTGCTTGGATGGGTGGATT TGGTGCTCAGCCTCCCCAAGGACAAGCCCCTCCCCCTGTAATACCTCCTCCCAACCAGGC TGGATATGGCATGGCCAGTTACCAAACACAGTGAGCTGGGACTCTAAACAAAATGTAATT CATGATAGCTTCAGTTTCCTTGTGACATTCTGAAGACATGAAAGTAGACATCGGAAAATG AAAATATTTATTTTAAAAATTGAAATGTTTGGAACCTTTAGCACAGCTTTGCTTTGGTGA AGGACACATGTCTTCTAGTTCTGCCTTTTTAAGTTTTTGTTCATGATGGATATGAACATG ATTTTTCTTTGTGTACAAAAACTAAAATAAAGTCAATAAAGACAATTCAAAAAAAAAAAA AAAAAAAAAAAAGAGAAATGGGTAATACATTTTGATTCTTAGATACTATTCCATTTTTAT CTTGCTGTTCAGTATTTTAACTCACTGTGTTTTTAAAAGAGCAAAAAAGGGAGGATTGTG AAAAACTGGGAATAACATATGAGTTCATCCTGAACCTTGATATTCCCTTCCCCTCCTCTG AGGTGGACCACATTCGAAGTCAGCAGAAAAAAGTGTGACATTGAGAAGAGATGCATGATT TTGAAGTCGCTTTGGAGGAAGTACTTTCTCTGTGCCTAAAGAAACCGAAGCCAGACTGAC AAAAGAAATTTGCCATCTAAATAAGGGACAGCATTGTTTCAGTTACTTGAGCAAATGTTG GTGGTCCACATTAAGACATATTTTTAAAACTTTAAAAAGTGTTGATTATTAAAGCTGTAG TGAATTACATTTCATTTTGGGGGGAAAATTCAAAGTATGGTGTTTATATTAAAGTCAGTC ATACTTATGCTTTTACATGAAGTTTAAATGATATACATTGTAAATAATTGAATACAGTGT TTAAAAAGCATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCTTCAGTTATTCAGTCAGATTGGACCCTGTAAAAGCTGTAAAATGATAACAGAGCATAC AAGCAATGACCCATATTGCTTTGTGGAATTTTATGAACACAGAGATGCAGCTGCTGCATT AGCTGCTATGAATGGGAGAAAAATTTTGGGAAAGGAGGTCAAAGTAAACTGGGCAACAAC ACCAAGTAGCCAGAAAAAAGATACTTCCAATCATTTCCACGTGTTTGTTGGGGATTTGAG TCCAGAAATTACAACAGAAGATATCAAATCAGCATTTGCCCCCTTTGGTAAAATATCGGA TGCCCGAGTAGTTAAAGATATGGCAACTGGAAAATCTAAAGGCTATGGCTTTGTATCTTT TTATAACAAACTGGATGCAGAAAATGCAATTGTGCATATGGGAGGTCAGTGGTTGGGTGG TCGTCAAATCAGAACCAATTGGGCCACACGTAAACCACCTGCACCTAAAAGTACACAAGA AAATAACACTAAGCAGTTGAGATTTGAAGATGTAGTAAACCAGTCAAGTCCAAAAAATTG TACTGTGTACTGTGGAGGAATTGCTTCTGGGTTAACAGATCAGCTTATGAGACAGACATT CTCACCATTTGGGCAAATTATGGAAATCAGAGTTTTTCCGGAGAAGGGCTATTCATTTGT CAGATTTTCCACCCACGAAAGTGCAGCCCATGCCATTGTCTCAGTGAATGGTACTACGAT CGAAGGACATGTTGTTAAATGCTATTGGGGTAAAGAATCTCCTGATATGACTAAAAACTT TTCCTAGGTCGACTATAGTCAGTGGGGCCAGTGGAGCCAAGTTTATGGAAATCCACAACA GTATGGACAGTATATGGCAAATGGGTGGCAAGTACCACCTTACGGAGTATACGGGCAGCC ATGGAATCAACAAGGATTTGGAGTAGATCAATCACCTTCAGCTGCTTGGATGGGTGGATT TGGTGCTCAGCCTCCCCAAGGACAAGCCCCTCCCCCTGTAATACCTCCTCCCAACCAGGC TGGATATGGCATGGCCAGTTACCAAACACAGTGAGCTGGGACTCTAAACAAAATGTAATT CATGATAGCTTCAGTTTCCTTGTGACATTCTGAAGACATGAAAGTAGACATCGGAAAATG AAAATATTTATTTTAAAAATTGAAATGTTTGGAACCTTTAGCACAGCTTTGCTTTGGTGA AGGACACATGTCTTCTAGTTCTGCCTTTTTAAGTTTTTGTTCATGATGGATATGAACATG ATTTTTCTTTGTGTACAAAAACTAAAATAAAGTCAATAAAGACAATTCAAAAAAAAAAAA AAAAAAAAAAAAGAGAAATGGGTAATACATTTTGATTCTTAGATACTATTCCATTTTTAT CTTGCTGTTCAGTATTTTAACTCACTGTGTTTTTAAAAGAGCAAAAAAGGGAGGATTGTG AAAAACTGGGAATAACATATGAGTTCATCCTGAACCTTGATATTCCCTTCCCCTCCTCTG AGGTGGACCACATTCGAAGTCAGCAGAAAAAAGTGTGACATTGAGAAGAGATGCATGATT TTGAAGTCGCTTTGGAGGAAGTACTTTCTCTGTGCCTAAAGAAACCGAAGCCAGACTGAC AAAAGAAATTTGCCATCTAAATAAGGGACAGCATTGTTTCAGTTACTTGAGCAAATGTTG GTGGTCCACATTAAGACATATTTTTAAAACTTTAAAAAGTGTTGATTATTAAAGCTGTAG TGAATTACATTTCATTTTGGGGGGAAAATTCAAAGTATGGTGTTTATATTAAAGTCAGTC ATACTTATGCTTTTACATGAAGTTTAAATGATATACATTGTAAATAATTGAATACAGTGT TTAAAAAGCATG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 54-486, - strand, RNAz p=0.748993 | |
| 779-897, + strand, RNAz p=0.642748 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 54-486, - strand, RNAz p=0.748993 | |
| 779-897, + strand, RNAz p=0.642748 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AL833106, + |
| Aligned organism(s): 58 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
| 54-155, gnl|bosTau2|chr26 (25645195-25645296) | |
| 54-155, gnl|canFam2|chr28 (32738937-32739034) | |
| 54-155, gnl|danRer3|chr13 (25951569-25951472) | |
| 54-155, gnl|dasNov1|scaffold_4778 (49371-49467) | |
| 54-155, gnl|echTel1|scaffold_285792 (1179-1082) | |
| 54-155, gnl|fr1|chrUn (245184842-245184939) | |
| 54-155, gnl|galGal2|chr6 (29279719-29279816) | |
| 54-155, gnl|hg17|chr10 (121331959-121332056) | |
| 54-155, gnl|Hg17|chr10 (121332061-121331960) | |
| 54-155, gnl|loxAfr1|scaffold_5305 (2551-2454) | |
| 54-155, gnl|mm7|chr7 (124545177-124545274) | |
| 54-155, gnl|Mm7|chr7 (124545279-124545178) | |
| 54-155, gnl|monDom2|scaffold_14 (40637913-40637816) | |
| 54-155, gnl|oryCun1|scaffold_204571 (39708-39611) | |
| 54-155, gnl|panTro1|chr8 (123601125-123601222) | |
| 54-155, gnl|rheMac2|chr9 (119203190-119203287) | |
| 54-155, gnl|rn3|chr1 (187844078-187844175) | |
| 54-155, gnl|tetNig1|chrUn_random (1754791-1754694) | |
| 54-155, gnl|xenTro1|scaffold_337 (886401-886498) | |
| 370-486, gnl|bosTau2|chr26 (25649419-25649535) | |
| 370-486, gnl|canFam2|chr12 (22086592-22086695) | |
| 370-486, gnl|dasNov1|scaffold_8914 (81357-81255) | |
| 370-486, gnl|echTel1|scaffold_285792 (5039-4933) | |
| 370-486, gnl|Hg17|chr10 (121328340-121328224) | |
| 370-486, gnl|hg17|chr6 (51358059-51358165) | |
| 370-486, gnl|loxAfr1|scaffold_26 (163039-163136) | |
| 370-486, gnl|mm7|chr7 (124542211-124542317) | |
| 370-486, gnl|Mm7|chr7 (124542321-124542205) | |
| 370-486, gnl|oryCun1|scaffold_177208 (4162-4055) | |
| 370-486, gnl|panTro1|chr5 (52338237-52338343) | |
| 370-486, gnl|rheMac2|chr4 (51059747-51059853) | |
| 370-486, gnl|rn3|chr1 (187840553-187840659) | |
| 370-486, gnl|tetNig1|chr12 (11501601-11501682) | |
| 672-775, gnl|bosTau2|chr11 (49503311-49503209) | |
| 672-775, gnl|canFam2|chr10 (71928410-71928554) | |
| 672-775, gnl|danRer3|chr5 (63204169-63204307) | |
| 672-775, gnl|dasNov1|scaffold_19886 (12199-12055) | |
| 672-775, gnl|echTel1|scaffold_305956 (63002-62858) | |
| 672-775, gnl|fr1|chrUn (58640637-58640778) | |
| 672-775, gnl|galGal2|chrUn (141313937-141313799) | |
| 672-775, gnl|hg17|chr2 (70354149-70354293) | |
| 672-775, gnl|Hg17|chr2 (70354269-70354167) | |
| 672-775, gnl|loxAfr1|scaffold_34032 (54433-54289) | |
| 672-775, gnl|mm7|chr6 (86501783-86501639) | |
| 672-775, gnl|Mm7|chr6 (86501661-86501763) | |
| 672-775, gnl|monDom2|scaffold_1 (93752486-93752630) | |
| 672-775, gnl|oryCun1|scaffold_204571 (44635-44509) | |
| 672-775, gnl|panTro1|chr12 (72665973-72666117) | |
| 672-775, gnl|rheMac2|chr13 (70495623-70495767) | |
| 672-775, gnl|rn3|chr4 (120858057-120857913) | |
| 672-775, gnl|tetNig1|chrUn_random (1757202-1757074) | |
| 672-775, gnl|xenTro1|scaffold_110 (1696691-1696553) | |
| 779-927, gnl|bosTau2|chr26 (25650828-25650976) | |
| 779-927, gnl|Hg17|chr10 (121326261-121326113) | |
| 779-927, gnl|Mm7|chr7 (124540513-124540365) | |
| 1079-1872, gnl|bosTau2|chr26 (25651823-25652617) | |
| 1079-1872, gnl|Hg17|chr10 (121325284-121324343) | |
| 1079-1872, gnl|Mm7|chr7 (124539208-124538278) |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 54-155, gnl|bosTau2|chr26 (25645195-25645296) | |
| 54-155, gnl|canFam2|chr28 (32738937-32739034) | |
| 54-155, gnl|danRer3|chr13 (25951569-25951472) | |
| 54-155, gnl|dasNov1|scaffold_4778 (49371-49467) | |
| 54-155, gnl|echTel1|scaffold_285792 (1179-1082) | |
| 54-155, gnl|fr1|chrUn (245184842-245184939) | |
| 54-155, gnl|galGal2|chr6 (29279719-29279816) | |
| 54-155, gnl|hg17|chr10 (121331959-121332056) | |
| 54-155, gnl|Hg17|chr10 (121332061-121331960) | |
| 54-155, gnl|loxAfr1|scaffold_5305 (2551-2454) | |
| 54-155, gnl|mm7|chr7 (124545177-124545274) | |
| 54-155, gnl|Mm7|chr7 (124545279-124545178) | |
| 54-155, gnl|monDom2|scaffold_14 (40637913-40637816) | |
| 54-155, gnl|oryCun1|scaffold_204571 (39708-39611) | |
| 54-155, gnl|panTro1|chr8 (123601125-123601222) | |
| 54-155, gnl|rheMac2|chr9 (119203190-119203287) | |
| 54-155, gnl|rn3|chr1 (187844078-187844175) | |
| 54-155, gnl|tetNig1|chrUn_random (1754791-1754694) | |
| 54-155, gnl|xenTro1|scaffold_337 (886401-886498) | |
| 370-486, gnl|bosTau2|chr26 (25649419-25649535) | |
| 370-486, gnl|canFam2|chr12 (22086592-22086695) | |
| 370-486, gnl|dasNov1|scaffold_8914 (81357-81255) | |
| 370-486, gnl|echTel1|scaffold_285792 (5039-4933) | |
| 370-486, gnl|Hg17|chr10 (121328340-121328224) | |
| 370-486, gnl|hg17|chr6 (51358059-51358165) | |
| 370-486, gnl|loxAfr1|scaffold_26 (163039-163136) | |
| 370-486, gnl|mm7|chr7 (124542211-124542317) | |
| 370-486, gnl|Mm7|chr7 (124542321-124542205) | |
| 370-486, gnl|oryCun1|scaffold_177208 (4162-4055) | |
| 370-486, gnl|panTro1|chr5 (52338237-52338343) | |
| 370-486, gnl|rheMac2|chr4 (51059747-51059853) | |
| 370-486, gnl|rn3|chr1 (187840553-187840659) | |
| 370-486, gnl|tetNig1|chr12 (11501601-11501682) | |
| 672-775, gnl|bosTau2|chr11 (49503311-49503209) | |
| 672-775, gnl|canFam2|chr10 (71928410-71928554) | |
| 672-775, gnl|danRer3|chr5 (63204169-63204307) | |
| 672-775, gnl|dasNov1|scaffold_19886 (12199-12055) | |
| 672-775, gnl|echTel1|scaffold_305956 (63002-62858) | |
| 672-775, gnl|fr1|chrUn (58640637-58640778) | |
| 672-775, gnl|galGal2|chrUn (141313937-141313799) | |
| 672-775, gnl|hg17|chr2 (70354149-70354293) | |
| 672-775, gnl|Hg17|chr2 (70354269-70354167) | |
| 672-775, gnl|loxAfr1|scaffold_34032 (54433-54289) | |
| 672-775, gnl|mm7|chr6 (86501783-86501639) | |
| 672-775, gnl|Mm7|chr6 (86501661-86501763) | |
| 672-775, gnl|monDom2|scaffold_1 (93752486-93752630) | |
| 672-775, gnl|oryCun1|scaffold_204571 (44635-44509) | |
| 672-775, gnl|panTro1|chr12 (72665973-72666117) | |
| 672-775, gnl|rheMac2|chr13 (70495623-70495767) | |
| 672-775, gnl|rn3|chr4 (120858057-120857913) | |
| 672-775, gnl|tetNig1|chrUn_random (1757202-1757074) | |
| 672-775, gnl|xenTro1|scaffold_110 (1696691-1696553) | |
| 779-927, gnl|bosTau2|chr26 (25650828-25650976) | |
| 779-927, gnl|Hg17|chr10 (121326261-121326113) | |
| 779-927, gnl|Mm7|chr7 (124540513-124540365) | |
| 1079-1872, gnl|bosTau2|chr26 (25651823-25652617) | |
| 1079-1872, gnl|Hg17|chr10 (121325284-121324343) | |
| 1079-1872, gnl|Mm7|chr7 (124539208-124538278) |
| Expressed library(ies): 31 entry(ies) | More info |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
| fty (0.527519) | |
| tra (0.492368) | |
| nca (0.410621) | |
| sme (0.305437) | |
| lin (0.291206) | |
| spl (0.286369) | |
| che (0.272628) | |
| cbe (0.239234) | |
| pgl (0.236967) | |
| nbm (0.198649) | |
| col (0.195008) | |
| nep (0.183925) | |
| sin (0.174948) | |
| duo (0.172801) | |
| eye (0.170503) | |
| tbr (0.154178) | |
| cli (0.152812) | |
| fat (0.147427) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| bla (0.124347) | |
| eru (0.120048) | |
| jca (0.11396) | |
| spc (0.113366) | |
| cty (0.10408) | |
| ldo (0.0970026) |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.527519) | |
| tra (0.492368) | |
| nca (0.410621) | |
| sme (0.305437) | |
| lin (0.291206) | |
| spl (0.286369) | |
| che (0.272628) | |
| cbe (0.239234) | |
| pgl (0.236967) | |
| nbm (0.198649) | |
| col (0.195008) | |
| nep (0.183925) | |
| sin (0.174948) | |
| duo (0.172801) | |
| eye (0.170503) | |
| tbr (0.154178) | |
| cli (0.152812) | |
| fat (0.147427) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| bla (0.124347) | |
| eru (0.120048) | |
| jca (0.11396) | |
| spc (0.113366) | |
| cty (0.10408) | |
| ldo (0.0970026) |