Non-Coding RNA Search

Ss1.1-LyN1-MLN01D090099.5

Sequence:


               
               CTAGTCGTTATGTAGTGGAGGGGTAGGCGCCCTCCTCCATGTTCTGGAAGGTTCTTGGTC
TCGACTAGGGCAGAAGCCCCAGGACTTCTAGTCCCCGGCTTCGGGTCCCTGCCGGCTGAG
CGGAGCCGCCGCCGCCATGTTTGGCTGCTTGGTGGCGGGGAGGCTGGTGCAAACAGCTGC
ACAGCAAGTGGCAGAGGATAAATTTGTTTTTGACTTGCCCGATTATGAAAATATCAACCA
TGTTGTGGTTTTTATGCTGGGAACAATCCCATTTCCTGAGGGAATGGGAGGATCTGTCTA
CTTTTCCTATCCTGATTCAAATGGAATGCCAGTATGGCAGCTCCTAGGATTTGTCACGAA
TGGGAAACCAAGTGCCATCTTCAAAATTTCAGGTCTTAAATCTGGTGAAGGAAGCCAACA
CCCTTTTGGAGCCATGAATATTGTCCAAACTCCGTCTGTTGCTCAGATTGGAATTTCAGT
GGAATTACTGGACAGTCTGGCTCAGCAGACTCCTGTAGGTAATGCTGCTGTATCATCAGT
TGACTCATTCACTCAGTTCACACAAAAGATGTTGGACAACTTCTACAATTTTGCTTCATC
ATTTGCTGTCTCTCAGGCCCAGATGACACCAAGTCCATCTGAAATGTTCATCCCAGCAAA
TGTGGTTCTGAAATGGTATGAAAACTTTCAAAGACGACTAGCACAGAACCCTCTCTTTTG
GAAAACATAATTTGAATAAAATAATTTTTAATGGATTCTGAAATTTGTCATGTTTTGAAG
ATAATGACTGTTTAAAAGCATGAAGTCAAAAGGATCATGAAGCTAAGTTTAAAAACTGCT
TTAGTAACTATGAAGCTTAATTGAAATCTTTATAAAAAATTAAAAACATTGAAAAATGAA
AATATGTTCATCATTAATGACTTTTTTCCCTTAAGCTTAAAATACTCAGAGACAAAACAT
TTTGTTTTGGCTATGATTCGTTTTTTACTTAAAAATAAAGCATATTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAGTCGTTATGTAGTGGAGGGGTAGGCGCCCTCCTCCATGTTCTGGAAGGTTCTTGGTC
TCGACTAGGGCAGAAGCCCCAGGACTTCTAGTCCCCGGCTTCGGGTCCCTGCCGGCTGAG
CGGAGCCGCCGCCGCCATGTTTGGCTGCTTGGTGGCGGGGAGGCTGGTGCAAACAGCTGC
ACAGCAAGTGGCAGAGGATAAATTTGTTTTTGACTTGCCCGATTATGAAAATATCAACCA
TGTTGTGGTTTTTATGCTGGGAACAATCCCATTTCCTGAGGGAATGGGAGGATCTGTCTA
CTTTTCCTATCCTGATTCAAATGGAATGCCAGTATGGCAGCTCCTAGGATTTGTCACGAA
TGGGAAACCAAGTGCCATCTTCAAAATTTCAGGTCTTAAATCTGGTGAAGGAAGCCAACA
CCCTTTTGGAGCCATGAATATTGTCCAAACTCCGTCTGTTGCTCAGATTGGAATTTCAGT
GGAATTACTGGACAGTCTGGCTCAGCAGACTCCTGTAGGTAATGCTGCTGTATCATCAGT
TGACTCATTCACTCAGTTCACACAAAAGATGTTGGACAACTTCTACAATTTTGCTTCATC
ATTTGCTGTCTCTCAGGCCCAGATGACACCAAGTCCATCTGAAATGTTCATCCCAGCAAA
TGTGGTTCTGAAATGGTATGAAAACTTTCAAAGACGACTAGCACAGAACCCTCTCTTTTG
GAAAACATAATTTGAATAAAATAATTTTTAATGGATTCTGAAATTTGTCATGTTTTGAAG
ATAATGACTGTTTAAAAGCATGAAGTCAAAAGGATCATGAAGCTAAGTTTAAAAACTGCT
TTAGTAACTATGAAGCTTAATTGAAATCTTTATAAAAAATTAAAAACATTGAAAAATGAA
AATATGTTCATCATTAATGACTTTTTTCCCTTAAGCTTAAAATACTCAGAGACAAAACAT
TTTGTTTTGGCTATGATTCGTTTTTTACTTAAAAATAAAGCATATTTA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57102310|ref|XP_533984.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57102310|ref|XP_533984.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               205-364, + strand, RNAz p=0.789877

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               205-364, + strand, RNAz p=0.789877

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               166-406, gnl|bosTau2|chr29 (5348327-5348567)
               

               
               166-406, gnl|Hg17|chr11 (85694934-85695174)
               

               
               166-406, gnl|Mm7|chr7 (85884400-85884160)
               


               
               459-898, gnl|bosTau2|chr11 (54670126-54670539)
               

               
               459-898, gnl|Hg17|chr2 (26295078-26298457)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               166-406, gnl|bosTau2|chr29 (5348327-5348567)
               

               
               166-406, gnl|Hg17|chr11 (85694934-85695174)
               

               
               166-406, gnl|Mm7|chr7 (85884400-85884160)
               


               
               459-898, gnl|bosTau2|chr11 (54670126-54670539)
               

               
               459-898, gnl|Hg17|chr2 (26295078-26298457)

Expressed library(ies): 48 entry(ies)

More info

Expressed library(ies): 48 entry(ies)

Help | Less info


               
               isp (1.50376)
               

               
               ste (1.08167)
               

               
               spc (1.02029)
               

               
               vin (0.997672)
               

               
               sme (0.91631)
               

               
               thg (0.760746)
               

               
               gul (0.532765)
               

               
               sug (0.509165)
               

               
               ldo (0.485013)
               

               
               cbe (0.478469)
               

               
               mgp (0.461361)
               

               
               bfe (0.449573)
               

               
               csk (0.422238)
               

               
               pla (0.401016)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               cut (0.339847)
               

               
               mga (0.32041)
               

               
               fco (0.314416)
               

               
               tbr (0.308356)
               

               
               ski (0.29347)
               

               
               liv (0.292569)
               

               
               hlv (0.278513)
               

               
               ssp (0.271039)
               

               
               lyg (0.266205)
               

               
               ova (0.258264)
               

               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               che (0.136314)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)

Expressed library(ies): 48 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (1.50376)
               

               
               ste (1.08167)
               

               
               spc (1.02029)
               

               
               vin (0.997672)
               

               
               sme (0.91631)
               

               
               thg (0.760746)
               

               
               gul (0.532765)
               

               
               sug (0.509165)
               

               
               ldo (0.485013)
               

               
               cbe (0.478469)
               

               
               mgp (0.461361)
               

               
               bfe (0.449573)
               

               
               csk (0.422238)
               

               
               pla (0.401016)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               cut (0.339847)
               

               
               mga (0.32041)
               

               
               fco (0.314416)
               

               
               tbr (0.308356)
               

               
               ski (0.29347)
               

               
               liv (0.292569)
               

               
               hlv (0.278513)
               

               
               ssp (0.271039)
               

               
               lyg (0.266205)
               

               
               ova (0.258264)
               

               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               che (0.136314)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)

	166-406, gnl\|bosTau2\|chr29 (5348327-5348567)
	166-406, gnl\|Hg17\|chr11 (85694934-85695174)
	166-406, gnl\|Mm7\|chr7 (85884400-85884160)

	459-898, gnl\|bosTau2\|chr11 (54670126-54670539)
	459-898, gnl\|Hg17\|chr2 (26295078-26298457)

	isp (1.50376)
	ste (1.08167)
	spc (1.02029)
	vin (0.997672)
	sme (0.91631)
	thg (0.760746)
	gul (0.532765)
	sug (0.509165)
	ldo (0.485013)
	cbe (0.478469)
	mgp (0.461361)
	bfe (0.449573)
	csk (0.422238)
	pla (0.401016)
	sin (0.349895)
	rec (0.346141)
	cut (0.339847)
	mga (0.32041)
	fco (0.314416)
	tbr (0.308356)
	ski (0.29347)
	liv (0.292569)
	hlv (0.278513)
	ssp (0.271039)
	lyg (0.266205)
	ova (0.258264)
	med (0.232504)
	ece (0.229305)
	nlu (0.191681)
	cmu (0.186393)
	sag (0.182715)
	mgm (0.180343)
	eye (0.170503)
	fhi (0.169578)
	cki (0.165235)
	nco (0.161734)
	cag (0.151194)
	fat (0.147427)
	lin (0.145603)
	spl (0.143184)
	che (0.136314)
	ret (0.128733)
	ese (0.126502)
	bla (0.124347)
	tra (0.123092)
	eru (0.120048)
	pgl (0.118483)
	eje (0.0988338)