Ss1.1-LyN1-MLN01D100035.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCCTCCGAGAGAGCGGACGCATCTCCGGTGCTAGGCGATCATGGCGCTGCTGGATGTTT GCGGAGCCCCCCGAGCGCAGAAGGAAGACTGGGCTTTCCCAGCCGCGGAAAGCCGGCAGC GCTCGGACCCTGGTCACTACAGTTTCTCTATGCGATCTCCGGAACTCGCCCTCCCCCGGG GAATGCAGCCCACTGAATTCCTCCGGTCCCTGGGTGGGGATGGAGAAAGGAACGTACAGA TTGAGATGGCTCATGGCACTACCACGCTGGCCTTCAAGTTCCAGCACGGAGTGATTGTGG CGGTGGATTCTCGGGCCTCGGCCGGGAGTTACATTGCCACATTAAGAGTGAACAAGGTGA TTGAGATTAACCCTTACCTGCTTGGCACCATGTCTGGCTGTGCGGCGGACTGTCAGTATT GGGAGCGTCTGCTGGCCAAGGAGTGCAGGTTGTACTATCTGCGGAATGGGGACCGTATCT CAGTGTCCGCAGCCTCCAAACTGCTCTCCAATATGATGTACCAGTACCGGGGCATGGGCC TCTCCATGGGCAGTATGATCTGTGGCTGGGACAAGAAGGGTCCTGGACTCTACTATGTGG ATGAAAATGGGACTCGGCTCTCGGGAAATATGTTCTCCACTGGTAGCGGGAACACCTACG CTTATGGGGTCATGGACAGTGGCCATCGGTACGATCTTAGCATTGAAGAGGCCTATGACC TGGGCCGGAGGGCTATTGTTCATGCCACTCATCGAGACAGCTATTCTGGAGGCGTTGTCA ATATGTACCACATGAAGGAAGATGGGTGGGTGAAGGTGGAGAGTACGGACGTCAGTGACC TGATGCACCAGTACCGGGAGGCCAGTCTGTAAGGGTGGCGGCGGCAGCTGGGCCGGCCTC TCCTGAGGAAGCCGGGCCTACTCAGGGACCTGGACCAGTTCAGGCCCCAGAAGAAAGAGG GGCCTAACGTGACCCAGAGGGAATGAACCAGTGGTCCCTGGGAGGCAGGGCGGAGTTTAT CCTTTTGTGTAGTCTCTGCTTCAATGGAGCCTCCCCCCCTCCCCAACCCCAACCTTCTGG GCATCTCACTAAGCACAATAAAAGAAAACGGTTACACACAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCCTCCGAGAGAGCGGACGCATCTCCGGTGCTAGGCGATCATGGCGCTGCTGGATGTTT GCGGAGCCCCCCGAGCGCAGAAGGAAGACTGGGCTTTCCCAGCCGCGGAAAGCCGGCAGC GCTCGGACCCTGGTCACTACAGTTTCTCTATGCGATCTCCGGAACTCGCCCTCCCCCGGG GAATGCAGCCCACTGAATTCCTCCGGTCCCTGGGTGGGGATGGAGAAAGGAACGTACAGA TTGAGATGGCTCATGGCACTACCACGCTGGCCTTCAAGTTCCAGCACGGAGTGATTGTGG CGGTGGATTCTCGGGCCTCGGCCGGGAGTTACATTGCCACATTAAGAGTGAACAAGGTGA TTGAGATTAACCCTTACCTGCTTGGCACCATGTCTGGCTGTGCGGCGGACTGTCAGTATT GGGAGCGTCTGCTGGCCAAGGAGTGCAGGTTGTACTATCTGCGGAATGGGGACCGTATCT CAGTGTCCGCAGCCTCCAAACTGCTCTCCAATATGATGTACCAGTACCGGGGCATGGGCC TCTCCATGGGCAGTATGATCTGTGGCTGGGACAAGAAGGGTCCTGGACTCTACTATGTGG ATGAAAATGGGACTCGGCTCTCGGGAAATATGTTCTCCACTGGTAGCGGGAACACCTACG CTTATGGGGTCATGGACAGTGGCCATCGGTACGATCTTAGCATTGAAGAGGCCTATGACC TGGGCCGGAGGGCTATTGTTCATGCCACTCATCGAGACAGCTATTCTGGAGGCGTTGTCA ATATGTACCACATGAAGGAAGATGGGTGGGTGAAGGTGGAGAGTACGGACGTCAGTGACC TGATGCACCAGTACCGGGAGGCCAGTCTGTAAGGGTGGCGGCGGCAGCTGGGCCGGCCTC TCCTGAGGAAGCCGGGCCTACTCAGGGACCTGGACCAGTTCAGGCCCCAGAAGAAAGAGG GGCCTAACGTGACCCAGAGGGAATGAACCAGTGGTCCCTGGGAGGCAGGGCGGAGTTTAT CCTTTTGTGTAGTCTCTGCTTCAATGGAGCCTCCCCCCCTCCCCAACCCCAACCTTCTGG GCATCTCACTAAGCACAATAAAAGAAAACGGTTACACACAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 1-188, gnl|bosTau2|chr23 (5525899-5525713) | |
| 1-188, gnl|canFam2|chr12 (5426033-5426307) | |
| 1-188, gnl|echTel1|scaffold_276379 (90381-90681) | |
| 1-188, gnl|hg17|chr6 (32919588-32919868) | |
| 1-188, gnl|Hg17|chr6 (32919791-32919605) | |
| 1-188, gnl|loxAfr1|scaffold_80907 (5842-6121) | |
| 1-188, gnl|mm7|chr17 (32278406-32278128) | |
| 1-188, gnl|Mm7|chr17 (32278202-32278387) | |
| 1-188, gnl|monDom2|scaffold_42 (15676568-15676302) | |
| 1-188, gnl|oryCun1|scaffold_197733 (4197-3915) | |
| 1-188, gnl|panTro1|chr5 (33359919-33360199) | |
| 1-188, gnl|rheMac2|chr4 (32540090-32540371) | |
| 1-188, gnl|rn3|chr20 (4789238-4789515) | |
| 247-818, gnl|bosTau2|chr10 (14017287-14016716) | |
| 247-818, gnl|Hg17|chr14 (22581411-22581982) | |
| 247-818, gnl|Mm7|chr14 (49492134-49492705) | |
| 277-586, gnl|bosTau2|chr10 (14023180-14023489) | |
| 277-586, gnl|canFam2|chr8 (6351681-6352010) | |
| 277-586, gnl|canFam2|chr8 (6352009-6351702) | |
| 277-586, gnl|danRer3|chr2 (34009068-34009383) | |
| 277-586, gnl|danRer3|chr2 (34009382-34009075) | |
| 277-586, gnl|dasNov1|scaffold_285246 (5-334) | |
| 277-586, gnl|dasNov1|scaffold_285246 (333-26) | |
| 277-586, gnl|echTel1|scaffold_251199 (7923-7607) | |
| 277-586, gnl|echTel1|scaffold_283968 (3070-3399) | |
| 277-586, gnl|fr1|chrUn (36760341-36760654) | |
| 277-586, gnl|fr1|chrUn (36760653-36760346) | |
| 277-586, gnl|hg17|chr14 (22572398-22572727) | |
| 277-586, gnl|Hg17|chr14 (22572725-22572416) | |
| 277-586, gnl|hg17|chr16 (45854311-45854616) | |
| 277-586, gnl|loxAfr1|scaffold_16046 (52919-53222) | |
| 277-586, gnl|loxAfr1|scaffold_7132 (204-533) | |
| 277-586, gnl|mm7|chr11 (102768760-102768461) | |
| 277-586, gnl|mm7|chr14 (49482942-49483266) | |
| 277-586, gnl|Mm7|chr14 (49483263-49482954) | |
| 277-586, gnl|monDom2|scaffold_12 (26788904-26788578) | |
| 277-586, gnl|monDom2|scaffold_12 (26788579-26788886) | |
| 277-586, gnl|oryCun1|scaffold_199976 (83588-83903) | |
| 277-586, gnl|oryCun1|scaffold_205495 (92282-92583) | |
| 277-586, gnl|panTro1|chr15 (21538336-21538665) | |
| 277-586, gnl|panTro1|chrUn_random (9620320-9620625) | |
| 277-586, gnl|rheMac2|chr20 (45464295-45464600) | |
| 277-586, gnl|rheMac2|chr7 (85862823-85863152) | |
| 277-586, gnl|rn3|chr15 (32708826-32709156) | |
| 277-586, gnl|rn3|chr15 (32709154-32708847) | |
| 277-586, gnl|tetNig1|chr15 (2082221-2082534) | |
| 277-586, gnl|tetNig1|chr15 (2082533-2082226) | |
| 277-586, gnl|xenTro1|scaffold_963 (369836-370157) | |
| 277-586, gnl|xenTro1|scaffold_963 (370156-369849) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-188, gnl|bosTau2|chr23 (5525899-5525713) | |
| 1-188, gnl|canFam2|chr12 (5426033-5426307) | |
| 1-188, gnl|echTel1|scaffold_276379 (90381-90681) | |
| 1-188, gnl|hg17|chr6 (32919588-32919868) | |
| 1-188, gnl|Hg17|chr6 (32919791-32919605) | |
| 1-188, gnl|loxAfr1|scaffold_80907 (5842-6121) | |
| 1-188, gnl|mm7|chr17 (32278406-32278128) | |
| 1-188, gnl|Mm7|chr17 (32278202-32278387) | |
| 1-188, gnl|monDom2|scaffold_42 (15676568-15676302) | |
| 1-188, gnl|oryCun1|scaffold_197733 (4197-3915) | |
| 1-188, gnl|panTro1|chr5 (33359919-33360199) | |
| 1-188, gnl|rheMac2|chr4 (32540090-32540371) | |
| 1-188, gnl|rn3|chr20 (4789238-4789515) | |
| 247-818, gnl|bosTau2|chr10 (14017287-14016716) | |
| 247-818, gnl|Hg17|chr14 (22581411-22581982) | |
| 247-818, gnl|Mm7|chr14 (49492134-49492705) | |
| 277-586, gnl|bosTau2|chr10 (14023180-14023489) | |
| 277-586, gnl|canFam2|chr8 (6351681-6352010) | |
| 277-586, gnl|canFam2|chr8 (6352009-6351702) | |
| 277-586, gnl|danRer3|chr2 (34009068-34009383) | |
| 277-586, gnl|danRer3|chr2 (34009382-34009075) | |
| 277-586, gnl|dasNov1|scaffold_285246 (5-334) | |
| 277-586, gnl|dasNov1|scaffold_285246 (333-26) | |
| 277-586, gnl|echTel1|scaffold_251199 (7923-7607) | |
| 277-586, gnl|echTel1|scaffold_283968 (3070-3399) | |
| 277-586, gnl|fr1|chrUn (36760341-36760654) | |
| 277-586, gnl|fr1|chrUn (36760653-36760346) | |
| 277-586, gnl|hg17|chr14 (22572398-22572727) | |
| 277-586, gnl|Hg17|chr14 (22572725-22572416) | |
| 277-586, gnl|hg17|chr16 (45854311-45854616) | |
| 277-586, gnl|loxAfr1|scaffold_16046 (52919-53222) | |
| 277-586, gnl|loxAfr1|scaffold_7132 (204-533) | |
| 277-586, gnl|mm7|chr11 (102768760-102768461) | |
| 277-586, gnl|mm7|chr14 (49482942-49483266) | |
| 277-586, gnl|Mm7|chr14 (49483263-49482954) | |
| 277-586, gnl|monDom2|scaffold_12 (26788904-26788578) | |
| 277-586, gnl|monDom2|scaffold_12 (26788579-26788886) | |
| 277-586, gnl|oryCun1|scaffold_199976 (83588-83903) | |
| 277-586, gnl|oryCun1|scaffold_205495 (92282-92583) | |
| 277-586, gnl|panTro1|chr15 (21538336-21538665) | |
| 277-586, gnl|panTro1|chrUn_random (9620320-9620625) | |
| 277-586, gnl|rheMac2|chr20 (45464295-45464600) | |
| 277-586, gnl|rheMac2|chr7 (85862823-85863152) | |
| 277-586, gnl|rn3|chr15 (32708826-32709156) | |
| 277-586, gnl|rn3|chr15 (32709154-32708847) | |
| 277-586, gnl|tetNig1|chr15 (2082221-2082534) | |
| 277-586, gnl|tetNig1|chr15 (2082533-2082226) | |
| 277-586, gnl|xenTro1|scaffold_963 (369836-370157) | |
| 277-586, gnl|xenTro1|scaffold_963 (370156-369849) |
| Expressed library(ies): 26 entry(ies) | More info |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
| cag (1.20956) | |
| lnt (0.996158) | |
| ill (0.877963) | |
| cly (0.844493) | |
| csp (0.805932) | |
| clu (0.717875) | |
| med (0.697512) | |
| fty (0.527519) | |
| duo (0.518403) | |
| jej (0.494609) | |
| cje (0.330469) | |
| cty (0.31224) | |
| cga (0.279096) | |
| cov (0.264306) | |
| cbl (0.229595) | |
| fcc (0.197785) | |
| col (0.195008) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| cli (0.152812) | |
| spl (0.143184) | |
| che (0.136314) | |
| sug (0.127291) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (1.20956) | |
| lnt (0.996158) | |
| ill (0.877963) | |
| cly (0.844493) | |
| csp (0.805932) | |
| clu (0.717875) | |
| med (0.697512) | |
| fty (0.527519) | |
| duo (0.518403) | |
| jej (0.494609) | |
| cje (0.330469) | |
| cty (0.31224) | |
| cga (0.279096) | |
| cov (0.264306) | |
| cbl (0.229595) | |
| fcc (0.197785) | |
| col (0.195008) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| cli (0.152812) | |
| spl (0.143184) | |
| che (0.136314) | |
| sug (0.127291) | |
| jca (0.11396) | |
| eje (0.0988338) |