Non-Coding RNA Search

Ss1.1-LyN1-MLN01D100059.5

Sequence:


               
               TGCCCCAGAGCTGTTGGTTGCCCAGAGCGCAGCCGAGCTCTCCGGATTGGTGGGTGCACC
CCAGTCTCTGTCCAGGGCCCGCCTTCTGCCTTTTTCTGCTTCGGATAGACCATGGCCCTG
AGAGCATGTGGTTTGATCATCTTCCGAAGACGCCTCATTCCCAAGGTGGATAACACTGCA
ATTGAGTTTCTACTGCTGCAGGCCTCCAATGGCATTCATCACTGGACTCCTCCCAAAGGC
CACGTGGAACCAGGAGAAAGTGACTTGCAAACAGCCCTGCGGGAGACTCAGGAGGAAGCA
GGCATAGATGCAGGCCAGCTGACCATCATTGAAGGCTTCAGAAAGGAGCTCAATTATGTG
GCCTGGGAGAAGCCTAAAACCGTCATCTACTGGCTGGCGGAAGTAAAGGACTACGATGTG
GAGGTCCGCCTCTCCCGCGAGCACCAGGCCTACCGCTGGCTGGGGCTGGATGAGGCCTGC
CAGTTGGCTCAGTTCAAGGACATGAAGGCAGTGCTCCAAGAAGGACACCAGTTTCTCTGC
TCCATGGCAGCCTGAGCTGACCAGAGCAGGGTCTTTGGCTTCAGTAGGATCCTTGAGGGC
CTTCTGAGACGAGCCCACCTTCACTTCCGGGGAAGGGTGTGCTGATCTTTGGCTCATCGC
AGCTGAGAATAGCTAGGTTAGCAAAATCACCTGAGGACTCTCAGAGGCAGGCAAGCAAAT
CTCTCAGCTGGGTGGAAAAGGAGGCAAAGAAGGAGTTAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCCCAGAGCTGTTGGTTGCCCAGAGCGCAGCCGAGCTCTCCGGATTGGTGGGTGCACC
CCAGTCTCTGTCCAGGGCCCGCCTTCTGCCTTTTTCTGCTTCGGATAGACCATGGCCCTG
AGAGCATGTGGTTTGATCATCTTCCGAAGACGCCTCATTCCCAAGGTGGATAACACTGCA
ATTGAGTTTCTACTGCTGCAGGCCTCCAATGGCATTCATCACTGGACTCCTCCCAAAGGC
CACGTGGAACCAGGAGAAAGTGACTTGCAAACAGCCCTGCGGGAGACTCAGGAGGAAGCA
GGCATAGATGCAGGCCAGCTGACCATCATTGAAGGCTTCAGAAAGGAGCTCAATTATGTG
GCCTGGGAGAAGCCTAAAACCGTCATCTACTGGCTGGCGGAAGTAAAGGACTACGATGTG
GAGGTCCGCCTCTCCCGCGAGCACCAGGCCTACCGCTGGCTGGGGCTGGATGAGGCCTGC
CAGTTGGCTCAGTTCAAGGACATGAAGGCAGTGCTCCAAGAAGGACACCAGTTTCTCTGC
TCCATGGCAGCCTGAGCTGACCAGAGCAGGGTCTTTGGCTTCAGTAGGATCCTTGAGGGC
CTTCTGAGACGAGCCCACCTTCACTTCCGGGGAAGGGTGTGCTGATCTTTGGCTCATCGC
AGCTGAGAATAGCTAGGTTAGCAAAATCACCTGAGGACTCTCAGAGGCAGGCAAGCAAAT
CTCTCAGCTGGGTGGAAAAGGAGGCAAAGAAGGAGTTAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47523684|ref|NP_999474.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47523684|ref|NP_999474.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               91-239, gnl|bosTau2|chr8 (41141272-41141421)
               

               
               91-239, gnl|Hg17|chr9 (34329014-34329165)
               

               
               91-239, gnl|Mm7|chr4 (41615960-41616111)
               


               
               514-768, gnl|bosTau2|chr8 (41143642-41143893)
               

               
               514-768, gnl|Hg17|chr9 (34333397-34333634)
               

               
               514-768, gnl|Mm7|chr4 (41618984-41619299)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               91-239, gnl|bosTau2|chr8 (41141272-41141421)
               

               
               91-239, gnl|Hg17|chr9 (34329014-34329165)
               

               
               91-239, gnl|Mm7|chr4 (41615960-41616111)
               


               
               514-768, gnl|bosTau2|chr8 (41143642-41143893)
               

               
               514-768, gnl|Hg17|chr9 (34333397-34333634)
               

               
               514-768, gnl|Mm7|chr4 (41618984-41619299)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               elu (0.385356)
               

               
               fce (0.271592)
               

               
               ese (0.253004)
               

               
               ebs (0.236602)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               ton (0.1755)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               hlv (0.139256)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               fce (0.271592)
               

               
               ese (0.253004)
               

               
               ebs (0.236602)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               ton (0.1755)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               hlv (0.139256)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	91-239, gnl\|bosTau2\|chr8 (41141272-41141421)
	91-239, gnl\|Hg17\|chr9 (34329014-34329165)
	91-239, gnl\|Mm7\|chr4 (41615960-41616111)

	514-768, gnl\|bosTau2\|chr8 (41143642-41143893)
	514-768, gnl\|Hg17\|chr9 (34333397-34333634)
	514-768, gnl\|Mm7\|chr4 (41618984-41619299)

	elu (0.385356)
	fce (0.271592)
	ese (0.253004)
	ebs (0.236602)
	mgp (0.230681)
	tes (0.207814)
	ton (0.1755)
	cut (0.169924)
	fhi (0.169578)
	nje (0.16592)
	cki (0.165235)
	hlv (0.139256)
	bla (0.124347)
	eru (0.120048)
	jca (0.11396)
	eje (0.0988338)
	ldo (0.0970026)