Non-Coding RNA Search

Ss1.1-LyN1-MLN01D100104.5

Sequence:


               
               AGTTACTGTGCGGCGGCGGCTAAGAAGGCGGCTGTGGTGGCGGCGGCGGCAGCAGAGACG
GTGGCTGAGGAGGCGACGGAGGAAACAGAAGATGGCAGATTTTTTGAAAGGACTGCCTGT
CTACAACAAAAGCAATTTTAGTCGCTTTCATGCCGACTCTGTGTGCAAAGCCTCGAACCG
ACGTCCCTCAGTCTACCTGCCCACTCGGGAATACCCGTCCGAACAGATCATTGTGACAGA
GAAAACAAACATTCTTTTGCGCTACCTACATCAGCAATGGGACAAAAAGAATGCCGCCAA
GAAGAGAGACCAGGAGCAAGTGGACCTCGAGGGCGAGAGCTCGGCGCCCCCCCGCAAGGT
CGCACGGACCGACAGCCCAGACATGCATGAGGACACTTAAGACTCACGCTCCCCCACAGG
CGCCTCTTGTCTTGTCTGCTCCTCGCCTGCCCGCCTTGTGTAAGCGTCCCCCCACCCCTC
CGCCGGCCCGCCCACGCCCCGCCATCCACACCACTTCCAACCTCATAGGAGCCGATGTAT
TTATTTTCCTTGAGTTTTTATTTATGCTGTAAGATGTACCAAGCGATGGTTAAAGGGGAC
GTCAGACCCAGTAGTGTGATGTTGATAGATGCTTTTTAAAAAACAACGTTGTTATTCTCC
TTCCCCCCTCCAGTTCCCCCTCCTGCCCCCTCTGCAAGGGTCTAGAGCTGGGGCCCTGCT
GCGGCCGGGCGGCAGGTGTGGAGGCCTTCCTCCTGACCCCCACCTGCCGTTCTGGGCCTT
AAAAACTTTGCCTTGTCTCGAGTTCCACCGGGACCTACTCTGTGCCCAGACCTTGCTCTG
AGCATGCGTAAGGGGGAGAAGTCAGCCCTTCTGGATTTTTCTCTTAAGTCATTTTATCAT
GGACTAGTGCGTGCTCCGTGTCCACCCCAATAAAAGGATCTTTCCTACCCGAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTACTGTGCGGCGGCGGCTAAGAAGGCGGCTGTGGTGGCGGCGGCGGCAGCAGAGACG
GTGGCTGAGGAGGCGACGGAGGAAACAGAAGATGGCAGATTTTTTGAAAGGACTGCCTGT
CTACAACAAAAGCAATTTTAGTCGCTTTCATGCCGACTCTGTGTGCAAAGCCTCGAACCG
ACGTCCCTCAGTCTACCTGCCCACTCGGGAATACCCGTCCGAACAGATCATTGTGACAGA
GAAAACAAACATTCTTTTGCGCTACCTACATCAGCAATGGGACAAAAAGAATGCCGCCAA
GAAGAGAGACCAGGAGCAAGTGGACCTCGAGGGCGAGAGCTCGGCGCCCCCCCGCAAGGT
CGCACGGACCGACAGCCCAGACATGCATGAGGACACTTAAGACTCACGCTCCCCCACAGG
CGCCTCTTGTCTTGTCTGCTCCTCGCCTGCCCGCCTTGTGTAAGCGTCCCCCCACCCCTC
CGCCGGCCCGCCCACGCCCCGCCATCCACACCACTTCCAACCTCATAGGAGCCGATGTAT
TTATTTTCCTTGAGTTTTTATTTATGCTGTAAGATGTACCAAGCGATGGTTAAAGGGGAC
GTCAGACCCAGTAGTGTGATGTTGATAGATGCTTTTTAAAAAACAACGTTGTTATTCTCC
TTCCCCCCTCCAGTTCCCCCTCCTGCCCCCTCTGCAAGGGTCTAGAGCTGGGGCCCTGCT
GCGGCCGGGCGGCAGGTGTGGAGGCCTTCCTCCTGACCCCCACCTGCCGTTCTGGGCCTT
AAAAACTTTGCCTTGTCTCGAGTTCCACCGGGACCTACTCTGTGCCCAGACCTTGCTCTG
AGCATGCGTAAGGGGGAGAAGTCAGCCCTTCTGGATTTTTCTCTTAAGTCATTTTATCAT
GGACTAGTGCGTGCTCCGTGTCCACCCCAATAAAAGGATCTTTCCTACCCGAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57101330|ref|XP_533880.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57101330|ref|XP_533880.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               130-555, gnl|bosTau2|chr28 (13485532-13485106)
               

               
               130-555, gnl|Hg17|chr14 (44426656-44425942)
               

               
               130-555, gnl|Mm7|chr8 (69939158-69942029)
               


               
               796-972, gnl|bosTau2|chr28 (13485113-13484938)
               

               
               796-972, gnl|Hg17|chr14 (44425942-44425776)
               

               
               796-972, gnl|Mm7|chr8 (69942022-69942176)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               130-555, gnl|bosTau2|chr28 (13485532-13485106)
               

               
               130-555, gnl|Hg17|chr14 (44426656-44425942)
               

               
               130-555, gnl|Mm7|chr8 (69939158-69942029)
               


               
               796-972, gnl|bosTau2|chr28 (13485113-13484938)
               

               
               796-972, gnl|Hg17|chr14 (44425942-44425776)
               

               
               796-972, gnl|Mm7|chr8 (69942022-69942176)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ece (0.45861)
               

               
               fce (0.271592)
               

               
               cov (0.264306)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.45861)
               

               
               fce (0.271592)
               

               
               cov (0.264306)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	130-555, gnl\|bosTau2\|chr28 (13485532-13485106)
	130-555, gnl\|Hg17\|chr14 (44426656-44425942)
	130-555, gnl\|Mm7\|chr8 (69939158-69942029)

	796-972, gnl\|bosTau2\|chr28 (13485113-13484938)
	796-972, gnl\|Hg17\|chr14 (44425942-44425776)
	796-972, gnl\|Mm7\|chr8 (69942022-69942176)

	ece (0.45861)
	fce (0.271592)
	cov (0.264306)
	fhi (0.169578)
	hyp (0.142837)
	ebs (0.118301)
	ecc (0.115035)