Non-Coding RNA Search

Ss1.1-LyN1-MLN01D110003.5

Sequence:


               
               GTCCTCTGTACATAATTACAACACAGAGATGTCCAGAAGTAGAGCAAGAAGAGTCCGGGC
CCCCAGCCGGGAAGCGGGGGGACAGGCAGGACTGGAGAAGGGAAAAGGAACCCGGCTCCG
CTTCACGGGTGAGGGGACTGACTGGAGTGTAAGAATCCAAACACTGCTGACTCCCATTGC
CAACAGTCACCCCTGTGGTGACAAAAGGCCAATCAGGACAGCACCTGGGGAGGGACCCCA
GAGGGAATGGGGGCAGGAGTGACAGAGATCCCAGCTGGGTCTAACTGGAGGTGAGGGGCT
TCAGACTTGTTCCCTGCCACCCCAGGGAAATGCAGCTGCCCCGCGTGCTCTGTCCTGGCC
GCGGAGGGATCAGCAGCTGGAAGGAGATGGGGAATTGATCCACTCTCCGCAGAAAGAGGG
TCAGCCTGCCCAGGGGGCGGGGAGCAACACCCCAGGCCAGGCCTGCTCTCCGCTGAGGGC
AAGAGGGGGGCCATGCCGTCCAGCTCCAGGGCAGAGGTCAGAAGTAAGCATCCTGCCGCG
CCTCCGATGCTGAGGGCCTGTCCCCGCCATCCTGGGGGGCAGGGGGCTCATCTGCCTTTC
GACGCAGCGAGAGCTTCCTGCCCTGGGCCTTCTTCTCCTGCTTCTGCCGCTCCTTCTCCT
GCTTCTGCCGCTCCTTCTCCTGCTTCTGCCGCTCCTTCTCCTGCTTCTCCCGCTCCTTCT
CCTGTTTCTGCCGCTCCTTCTCACGTTCCTTTTCCTGTTTTTGCCGCTCTTTCTCCTGCC
TCCGGGCCTCCTTGCTCGGAGCCAGTGGGGTGCTGTTGCCAGTAGGCGAAGGAAGAGATG
GACGCAGTCCCTCGGCGGTGACCACGGGCCCCGGAGCAGGCCCTGCGCTGGCCCGGCGGG
CAGGCAGGGGTGGAGAGGGGGCCCCTCCAGGGGCCCGGGAGCCTCGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCTCTGTACATAATTACAACACAGAGATGTCCAGAAGTAGAGCAAGAAGAGTCCGGGC
CCCCAGCCGGGAAGCGGGGGGACAGGCAGGACTGGAGAAGGGAAAAGGAACCCGGCTCCG
CTTCACGGGTGAGGGGACTGACTGGAGTGTAAGAATCCAAACACTGCTGACTCCCATTGC
CAACAGTCACCCCTGTGGTGACAAAAGGCCAATCAGGACAGCACCTGGGGAGGGACCCCA
GAGGGAATGGGGGCAGGAGTGACAGAGATCCCAGCTGGGTCTAACTGGAGGTGAGGGGCT
TCAGACTTGTTCCCTGCCACCCCAGGGAAATGCAGCTGCCCCGCGTGCTCTGTCCTGGCC
GCGGAGGGATCAGCAGCTGGAAGGAGATGGGGAATTGATCCACTCTCCGCAGAAAGAGGG
TCAGCCTGCCCAGGGGGCGGGGAGCAACACCCCAGGCCAGGCCTGCTCTCCGCTGAGGGC
AAGAGGGGGGCCATGCCGTCCAGCTCCAGGGCAGAGGTCAGAAGTAAGCATCCTGCCGCG
CCTCCGATGCTGAGGGCCTGTCCCCGCCATCCTGGGGGGCAGGGGGCTCATCTGCCTTTC
GACGCAGCGAGAGCTTCCTGCCCTGGGCCTTCTTCTCCTGCTTCTGCCGCTCCTTCTCCT
GCTTCTGCCGCTCCTTCTCCTGCTTCTGCCGCTCCTTCTCCTGCTTCTCCCGCTCCTTCT
CCTGTTTCTGCCGCTCCTTCTCACGTTCCTTTTCCTGTTTTTGCCGCTCTTTCTCCTGCC
TCCGGGCCTCCTTGCTCGGAGCCAGTGGGGTGCTGTTGCCAGTAGGCGAAGGAAGAGATG
GACGCAGTCCCTCGGCGGTGACCACGGGCCCCGGAGCAGGCCCTGCGCTGGCCCGGCGGG
CAGGCAGGGGTGGAGAGGGGGCCCCTCCAGGGGCCCGGGAGCCTCGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9UFP2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9UFP2_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-157, + strand, RNAz p=0.999756
               

               
               350-504, + strand, RNAz p=0.928806

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-157, + strand, RNAz p=0.999756
               

               
               350-504, + strand, RNAz p=0.928806

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               401-495, + strand, RNAmicro p=0.999993
               

               
               397-498, - strand, RNAmicro p=0.999975

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               401-495, + strand, RNAmicro p=0.999993
               

               
               397-498, - strand, RNAmicro p=0.999975

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-240, gnl|bosTau2|chr25 (24431289-24431048)
               

               
               1-240, gnl|Hg17|chr16 (30276297-30276547)
               


               
               350-948, gnl|bosTau2|chr25 (24430997-24430394)
               

               
               350-948, gnl|Hg17|chr16 (30276599-30277193)
               

               
               350-948, gnl|Mm7|chr7 (123294965-123295568)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-240, gnl|bosTau2|chr25 (24431289-24431048)
               

               
               1-240, gnl|Hg17|chr16 (30276297-30276547)
               


               
               350-948, gnl|bosTau2|chr25 (24430997-24430394)
               

               
               350-948, gnl|Hg17|chr16 (30276599-30277193)
               

               
               350-948, gnl|Mm7|chr7 (123294965-123295568)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               nms (0.213858)
               

               
               nco (0.161734)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               nco (0.161734)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

	40-157, + strand, RNAz p=0.999756
	350-504, + strand, RNAz p=0.928806

	401-495, + strand, RNAmicro p=0.999993
	397-498, - strand, RNAmicro p=0.999975

	1-240, gnl\|bosTau2\|chr25 (24431289-24431048)
	1-240, gnl\|Hg17\|chr16 (30276297-30276547)

	350-948, gnl\|bosTau2\|chr25 (24430997-24430394)
	350-948, gnl\|Hg17\|chr16 (30276599-30277193)
	350-948, gnl\|Mm7\|chr7 (123294965-123295568)

	nms (0.213858)
	nco (0.161734)
	pla (0.133672)
	eep (0.122564)
	jca (0.11396)