Non-Coding RNA Search

Ss1.1-LyN1-MLN01D110062.5

Sequence:


               
               TGCCAGCCTAGAACATGCCCAGCCTGTGCCCAGCAATGCTGCCCCAATGGTGCCTGGACT
GGGCGGCGGCCACAGGGAGGCCCAGCTCTCTTACTCCTTCCTCCACTGTGTTGTTATATT
TATGGGCAAAGCCAGGTGACACCACAGGTTCTAGCTCCAGATTAGCAGCATGACACCATC
AAAACTTAAGACCATGGTGAGATTTTAACTTCATTTAAATGCTACCTAATATTTATGGTG
TCAGAGCAAAAGGGTATCATAGTGAGTTAATTTGATATTCATGTTCTGAAAGTATATGTT
TGTTTTTCCAGTTTTATATGCAGTTTGTGTTGTTGTTGTACTTGTATCCAGATTTCTTTT
CACTGTTCTTTCTAACAATCTAAAGCTTTCATAGAATCATTTGGATCTTGTACAGAATAT
AACTTATTGGGGATAAACACTTCAACTTTTGGCAGAAAAAAATACTTTGATTCTCCCCAA
GGTCATTTGTATTCAGAATAGAACAGTAGCCCACTCCCCATAAAACTCTGTTAAGACAAG
CCTCCTGTATGAAGCCAGAAGCACAAGTGCCTTCAGAGGGCAATTTATTCCAGTCTAGTT
GCCTCCCCAGTTTGTGTGTGGCCTGTACCCCCAACAGCAGGGACTGGGGAGGGGTTGGGA
AGGTTTTTTTCTTTTCTACATCTTCACAGGTTCAGCTGGAAGCAGCTGATGGGGCCTGGG
TCCAGACTTACTATCCGAGATATTCTGATCCGCACAACTGTACAGACAGGGTTCCCTCAC
TGCTAGTCAGCCTCCTTTGGAAAGTGGACTGGTCATTGCTTCCAGCACTTTGAAGAAGTG
AGCAAAGACATGCCACGTTTTCCGATGAATCTTTCTCCCTTACACAGAGAGCAACCGGCT
TCTTTTTTAAAAAATCCTTTCTATCTGTTGAATACAACAGTGCGCTTTTGGTGCACATTT
TTTAGCAATAGTTGTGAATTAATGTCGGGAAAAAAACAAAAACAAAAAAACTCATTTACC
AGCCCTCAGTTGTGTTTGCACGAGGGTCTCACTGAGCCGTGCCGCCCTATGTGCCAGGCC
TCAAGGGGTGACTGCGCTCCCTTCCTGTCATAGATCTGACCCCCAGCATGGTTGTGGTTT
TTTTTGTTGTTCCAGTCAAACCAGTAATAGTTTCCAGAAATTTTGACAGTCTGCAATGCC
AAAAGGGTAAAAATCTGTATTTCACAGTTGTATAGAATAAAGGCTTTAGTTAAAATAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCAGCCTAGAACATGCCCAGCCTGTGCCCAGCAATGCTGCCCCAATGGTGCCTGGACT
GGGCGGCGGCCACAGGGAGGCCCAGCTCTCTTACTCCTTCCTCCACTGTGTTGTTATATT
TATGGGCAAAGCCAGGTGACACCACAGGTTCTAGCTCCAGATTAGCAGCATGACACCATC
AAAACTTAAGACCATGGTGAGATTTTAACTTCATTTAAATGCTACCTAATATTTATGGTG
TCAGAGCAAAAGGGTATCATAGTGAGTTAATTTGATATTCATGTTCTGAAAGTATATGTT
TGTTTTTCCAGTTTTATATGCAGTTTGTGTTGTTGTTGTACTTGTATCCAGATTTCTTTT
CACTGTTCTTTCTAACAATCTAAAGCTTTCATAGAATCATTTGGATCTTGTACAGAATAT
AACTTATTGGGGATAAACACTTCAACTTTTGGCAGAAAAAAATACTTTGATTCTCCCCAA
GGTCATTTGTATTCAGAATAGAACAGTAGCCCACTCCCCATAAAACTCTGTTAAGACAAG
CCTCCTGTATGAAGCCAGAAGCACAAGTGCCTTCAGAGGGCAATTTATTCCAGTCTAGTT
GCCTCCCCAGTTTGTGTGTGGCCTGTACCCCCAACAGCAGGGACTGGGGAGGGGTTGGGA
AGGTTTTTTTCTTTTCTACATCTTCACAGGTTCAGCTGGAAGCAGCTGATGGGGCCTGGG
TCCAGACTTACTATCCGAGATATTCTGATCCGCACAACTGTACAGACAGGGTTCCCTCAC
TGCTAGTCAGCCTCCTTTGGAAAGTGGACTGGTCATTGCTTCCAGCACTTTGAAGAAGTG
AGCAAAGACATGCCACGTTTTCCGATGAATCTTTCTCCCTTACACAGAGAGCAACCGGCT
TCTTTTTTAAAAAATCCTTTCTATCTGTTGAATACAACAGTGCGCTTTTGGTGCACATTT
TTTAGCAATAGTTGTGAATTAATGTCGGGAAAAAAACAAAAACAAAAAAACTCATTTACC
AGCCCTCAGTTGTGTTTGCACGAGGGTCTCACTGAGCCGTGCCGCCCTATGTGCCAGGCC
TCAAGGGGTGACTGCGCTCCCTTCCTGTCATAGATCTGACCCCCAGCATGGTTGTGGTTT
TTTTTGTTGTTCCAGTCAAACCAGTAATAGTTTCCAGAAATTTTGACAGTCTGCAATGCC
AAAAGGGTAAAAATCTGTATTTCACAGTTGTATAGAATAAAGGCTTTAGTTAAAATAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               584-738, - strand, RNAz p=0.994723
               

               
               858-966, - strand, RNAz p=0.827626

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               584-738, - strand, RNAz p=0.994723
               

               
               858-966, - strand, RNAz p=0.827626

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               17-1257, gnl|bosTau2|chr22 (11295885-11294630)
               

               
               17-1257, gnl|Hg17|chr3 (39111899-39113159)
               

               
               17-1257, gnl|Mm7|chr9 (119621338-119622481)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-1257, gnl|bosTau2|chr22 (11295885-11294630)
               

               
               17-1257, gnl|Hg17|chr3 (39111899-39113159)
               

               
               17-1257, gnl|Mm7|chr9 (119621338-119622481)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               cmu (0.55918)
               

               
               clu (0.239292)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.55918)
               

               
               clu (0.239292)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               cty (0.10408)

	584-738, - strand, RNAz p=0.994723
	858-966, - strand, RNAz p=0.827626

	17-1257, gnl\|bosTau2\|chr22 (11295885-11294630)
	17-1257, gnl\|Hg17\|chr3 (39111899-39113159)
	17-1257, gnl\|Mm7\|chr9 (119621338-119622481)

	cmu (0.55918)
	clu (0.239292)
	cbe (0.239234)
	hea (0.204499)
	che (0.136314)
	pla (0.133672)
	kid (0.129735)
	sug (0.127291)
	bla (0.124347)
	eep (0.122564)
	med (0.116252)
	cty (0.10408)