Non-Coding RNA Search

Ss1.1-LyN1-MLN01D110068.5

Sequence:


               
               AGTGCAAACGCTCCGGCTTCTCCTCGGTCAGGCGGAACCTGCTCTGCTGGGCCCGGTGGC
CGCAAAAAAACTTTCTTTCTCCCGCCCCAACGGTCACAGCGGCCAACTGCCTCGCCCGCC
TGGCGGCCTACCCCGCCTTCTCTCCTCTCCAGCTCCGCGCGGCCCTGTCTCCCTCTGGCC
CCGCGGTATCCGCTTGCTGTTGCCACCGCCTCCTCGTCTTCTGCCCGTGCAACCGGCCCG
CCCCGCTGCAGTGATGTGCGACAAGGAGTTCATGTGGGCCCTGAAAAACGGGGACCTGGA
TGAGGTGAAAGACTACGTGGCCAAGGGAGAAGATGTCAACCGGACACTAGAAGGTGGAAG
GAAGCCCCTTCATTATGCAGCAGATTGTGGGCAGCTTGAAATCCTGGAATTTCTGCTGCT
GAAAGGAGCAGATATTAATGCTCCAGATAAGCATCATATTACACCTCTTCTCTCTGCCGT
CTATGAAGGTCATGTTTCCTGTGTGAAATTGCTTCTGTCAAAGGGTGCTGATAAGACTGT
GAAAGGTCCAGATGGACTGACTGCCTTTGAAGCCACTGACAACCAGGCAATCAAAGCCCT
TCTTCAGTGATGGACGGATGGGCTAACAGCTCTGAAAGAATGACTCTCCTGTGGCCTCAC
ACTGCTGCCTGTCTGTCTGTCACTCTCTATCTGCCAGCTTCTTCAGCTAAAATACTTTTA
GAGGGGTGAGGGGAGAGAGAAATTCCTAACAAATCAGACTACCAGAACAAACAATGTTTG
GGAGGAGAGGAAAAAACAAGATCAGGCTTTTACTAGGATTCCTGATCAGGTCAGCCTCTT
TTCCATCTCCAGTAAAATACACAGCTTATACCCATGGGAGAGCAAAGACTAAATATACCG
GTAACATTTGACCTTTTCAGCTCCCTAGCTAATGTATTAATCGGATTGTGTTGAGGGTCT
GATTTTACCCAGGCCCACTCTCCATTTTTGGTAGCCCTACCTGTGCCAACAGTAGTGGCT
GCTGTGACGTAACTTAGGGTGCTGAGATAAGCAATTAGCTCTAGCCTTCTGCCTTAAGAT
GCACTCTAGTGGGGATCTCCTGGCGTAGTCAAGAGCGCTGCCTGTGGTTGGTGACCAAAT
CTTCCCTCGGTGACTTGCAGCTTTATGTGGAAGCTCAGTTAAGGCGAGGAGGGGGCACAC
TCCTAAACTGCTGGACGGCTGAACTGTGGATTTCCTCTCCCCCTTCACATGGATTTCATG
TCTCTTTAGATACAACTGACTAGTTTTATTTATAAAATCTCAAATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGCAAACGCTCCGGCTTCTCCTCGGTCAGGCGGAACCTGCTCTGCTGGGCCCGGTGGC
CGCAAAAAAACTTTCTTTCTCCCGCCCCAACGGTCACAGCGGCCAACTGCCTCGCCCGCC
TGGCGGCCTACCCCGCCTTCTCTCCTCTCCAGCTCCGCGCGGCCCTGTCTCCCTCTGGCC
CCGCGGTATCCGCTTGCTGTTGCCACCGCCTCCTCGTCTTCTGCCCGTGCAACCGGCCCG
CCCCGCTGCAGTGATGTGCGACAAGGAGTTCATGTGGGCCCTGAAAAACGGGGACCTGGA
TGAGGTGAAAGACTACGTGGCCAAGGGAGAAGATGTCAACCGGACACTAGAAGGTGGAAG
GAAGCCCCTTCATTATGCAGCAGATTGTGGGCAGCTTGAAATCCTGGAATTTCTGCTGCT
GAAAGGAGCAGATATTAATGCTCCAGATAAGCATCATATTACACCTCTTCTCTCTGCCGT
CTATGAAGGTCATGTTTCCTGTGTGAAATTGCTTCTGTCAAAGGGTGCTGATAAGACTGT
GAAAGGTCCAGATGGACTGACTGCCTTTGAAGCCACTGACAACCAGGCAATCAAAGCCCT
TCTTCAGTGATGGACGGATGGGCTAACAGCTCTGAAAGAATGACTCTCCTGTGGCCTCAC
ACTGCTGCCTGTCTGTCTGTCACTCTCTATCTGCCAGCTTCTTCAGCTAAAATACTTTTA
GAGGGGTGAGGGGAGAGAGAAATTCCTAACAAATCAGACTACCAGAACAAACAATGTTTG
GGAGGAGAGGAAAAAACAAGATCAGGCTTTTACTAGGATTCCTGATCAGGTCAGCCTCTT
TTCCATCTCCAGTAAAATACACAGCTTATACCCATGGGAGAGCAAAGACTAAATATACCG
GTAACATTTGACCTTTTCAGCTCCCTAGCTAATGTATTAATCGGATTGTGTTGAGGGTCT
GATTTTACCCAGGCCCACTCTCCATTTTTGGTAGCCCTACCTGTGCCAACAGTAGTGGCT
GCTGTGACGTAACTTAGGGTGCTGAGATAAGCAATTAGCTCTAGCCTTCTGCCTTAAGAT
GCACTCTAGTGGGGATCTCCTGGCGTAGTCAAGAGCGCTGCCTGTGGTTGGTGACCAAAT
CTTCCCTCGGTGACTTGCAGCTTTATGTGGAAGCTCAGTTAAGGCGAGGAGGGGGCACAC
TCCTAAACTGCTGGACGGCTGAACTGTGGATTTCCTCTCCCCCTTCACATGGATTTCATG
TCTCTTTAGATACAACTGACTAGTTTTATTTATAAAATCTCAAATTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51094810|gb|EAL24056.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51094810|gb|EAL24056.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               41-146, - strand, RNAz p=0.594642
               

               
               41-147, - strand, RNAz p=0.847643

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-146, - strand, RNAz p=0.594642
               

               
               41-147, - strand, RNAz p=0.847643

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-326, gnl|bosTau2|chr4 (53774822-53774483)
               

               
               1-326, gnl|canFam2|chr16 (15267946-15267743)
               

               
               1-326, gnl|dasNov1|scaffold_2303 (76733-76950)
               

               
               1-326, gnl|galGal2|chr1 (54886785-54886575)
               

               
               1-326, gnl|hg17|chr7 (135119032-135119248)
               

               
               1-326, gnl|Hg17|chr7 (135119361-135119031)
               

               
               1-326, gnl|loxAfr1|scaffold_7376 (36647-36439)
               

               
               1-326, gnl|mm7|chr6 (35470923-35471090)
               

               
               1-326, gnl|Mm7|chr6 (35471199-35470922)
               

               
               1-326, gnl|monDom2|scaffold_22 (7497549-7497323)
               

               
               1-326, gnl|oryCun1|scaffold_167490 (16957-17170)
               

               
               1-326, gnl|panTro1|chr6 (137822500-137822716)
               

               
               1-326, gnl|rheMac2|chr3 (173488247-173488463)
               

               
               1-326, gnl|rn3|chr4 (63200115-63200281)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-326, gnl|bosTau2|chr4 (53774822-53774483)
               

               
               1-326, gnl|canFam2|chr16 (15267946-15267743)
               

               
               1-326, gnl|dasNov1|scaffold_2303 (76733-76950)
               

               
               1-326, gnl|galGal2|chr1 (54886785-54886575)
               

               
               1-326, gnl|hg17|chr7 (135119032-135119248)
               

               
               1-326, gnl|Hg17|chr7 (135119361-135119031)
               

               
               1-326, gnl|loxAfr1|scaffold_7376 (36647-36439)
               

               
               1-326, gnl|mm7|chr6 (35470923-35471090)
               

               
               1-326, gnl|Mm7|chr6 (35471199-35470922)
               

               
               1-326, gnl|monDom2|scaffold_22 (7497549-7497323)
               

               
               1-326, gnl|oryCun1|scaffold_167490 (16957-17170)
               

               
               1-326, gnl|panTro1|chr6 (137822500-137822716)
               

               
               1-326, gnl|rheMac2|chr3 (173488247-173488463)
               

               
               1-326, gnl|rn3|chr4 (63200115-63200281)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               clu (0.358938)
               

               
               sto (0.179824)
               

               
               csp (0.161186)
               

               
               liv (0.146284)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.358938)
               

               
               sto (0.179824)
               

               
               csp (0.161186)
               

               
               liv (0.146284)
               

               
               cty (0.10408)

	41-146, - strand, RNAz p=0.594642
	41-147, - strand, RNAz p=0.847643

	1-326, gnl\|bosTau2\|chr4 (53774822-53774483)
	1-326, gnl\|canFam2\|chr16 (15267946-15267743)
	1-326, gnl\|dasNov1\|scaffold_2303 (76733-76950)
	1-326, gnl\|galGal2\|chr1 (54886785-54886575)
	1-326, gnl\|hg17\|chr7 (135119032-135119248)
	1-326, gnl\|Hg17\|chr7 (135119361-135119031)
	1-326, gnl\|loxAfr1\|scaffold_7376 (36647-36439)
	1-326, gnl\|mm7\|chr6 (35470923-35471090)
	1-326, gnl\|Mm7\|chr6 (35471199-35470922)
	1-326, gnl\|monDom2\|scaffold_22 (7497549-7497323)
	1-326, gnl\|oryCun1\|scaffold_167490 (16957-17170)
	1-326, gnl\|panTro1\|chr6 (137822500-137822716)
	1-326, gnl\|rheMac2\|chr3 (173488247-173488463)
	1-326, gnl\|rn3\|chr4 (63200115-63200281)

	clu (0.358938)
	sto (0.179824)
	csp (0.161186)
	liv (0.146284)
	cty (0.10408)