Non-Coding RNA Search

Ss1.1-LyN1-MLN01D110084.5

Sequence:


               
               CGTTGCTTACCGCGCCGACGGCAATGGCGGGAAGCGAGGCTGGCAGCCGAGGCAGTTCTC
CTCAGCCGCATCACAGCGACTGGGGTCGCCTGGAGGCTGCCATCCTCAGCGGCTGGAGGA
GCTTCTGGCAGTCGGTGGGGAAGGAGAGGGCGGCTCAAAGGGCCTCTCCGGAGGAGGCGG
ACGAGGAGGGCAATCCGTTGTCGCGGCTGCCGATTGATGTACAGCTATATATTTTGTCAT
TTCTTTCACCTCATGATTTATGTCAGCTGGGAAGTACAAGTCATTATTGGAATGAAACTG
TACGAGATCCAATTCTGTGGAGATATTTTCTGTTGAGGGATCTTCCTTCTTGGTCTTCTG
TTGACTGGAAGTCTCTTCCAGATCTAGAAATCTTAAAAAAGCCTATATTTGAGGTCACTG
CTGGTTCATTTTTTGACTACATGGCAGTGTTTGGAAGAACTAAATACATCTTTGGTGTTG
AGCTTGATGTCATCCGAGGAACTTTGCCCAACAGCTGGTTTGCCTCAGAGGCAGATTGAT
GGTATTGGATCAGGAGTCAGTTTTCAGTTGCACAACCAGCATGAATTCAACATCCTGATA
TTATATTCAACTACAAGAAAGGAAAGAGATAGAGCTAGAGAAGAGCATACAAGTGCGGTT
AACAAGATGTTCAGTCTACAGAATGAAGGGGATGATCAACAAGGAAGCCGGTACAGTGTA
ATTCCACAAATTCAGAAGGTGTGTGAAGTTGTTGATGGGTTCATCTATGTTGCTAATGCT
GAAGCTCATAAAAGTAAGCATTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTTGCTTACCGCGCCGACGGCAATGGCGGGAAGCGAGGCTGGCAGCCGAGGCAGTTCTC
CTCAGCCGCATCACAGCGACTGGGGTCGCCTGGAGGCTGCCATCCTCAGCGGCTGGAGGA
GCTTCTGGCAGTCGGTGGGGAAGGAGAGGGCGGCTCAAAGGGCCTCTCCGGAGGAGGCGG
ACGAGGAGGGCAATCCGTTGTCGCGGCTGCCGATTGATGTACAGCTATATATTTTGTCAT
TTCTTTCACCTCATGATTTATGTCAGCTGGGAAGTACAAGTCATTATTGGAATGAAACTG
TACGAGATCCAATTCTGTGGAGATATTTTCTGTTGAGGGATCTTCCTTCTTGGTCTTCTG
TTGACTGGAAGTCTCTTCCAGATCTAGAAATCTTAAAAAAGCCTATATTTGAGGTCACTG
CTGGTTCATTTTTTGACTACATGGCAGTGTTTGGAAGAACTAAATACATCTTTGGTGTTG
AGCTTGATGTCATCCGAGGAACTTTGCCCAACAGCTGGTTTGCCTCAGAGGCAGATTGAT
GGTATTGGATCAGGAGTCAGTTTTCAGTTGCACAACCAGCATGAATTCAACATCCTGATA
TTATATTCAACTACAAGAAAGGAAAGAGATAGAGCTAGAGAAGAGCATACAAGTGCGGTT
AACAAGATGTTCAGTCTACAGAATGAAGGGGATGATCAACAAGGAAGCCGGTACAGTGTA
ATTCCACAAATTCAGAAGGTGTGTGAAGTTGTTGATGGGTTCATCTATGTTGCTAATGCT
GAAGCTCATAAAAGTAAGCATTAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               12-212, - strand, RNAz p=0.870795

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               12-212, - strand, RNAz p=0.870795

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               131-215, + strand, RNAmicro p=0.944257

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               131-215, + strand, RNAmicro p=0.944257

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               12-212, gnl|bosTau2|chr20 (19457580-19457380)
               

               
               12-212, gnl|canFam2|chr4 (70863430-70863020)
               

               
               12-212, gnl|dasNov1|scaffold_63957 (10775-11200)
               

               
               12-212, gnl|echTel1|scaffold_287501 (42663-43054)
               

               
               12-212, gnl|hg17|chr5 (41961101-41961509)
               

               
               12-212, gnl|Hg17|chr5 (41961162-41961357)
               

               
               12-212, gnl|loxAfr1|scaffold_1154 (24410-24052)
               

               
               12-212, gnl|mm7|chr15 (3807138-3806810)
               

               
               12-212, gnl|Mm7|chr15 (3807100-3806901)
               

               
               12-212, gnl|monDom2|scaffold_20 (28872607-28872181)
               

               
               12-212, gnl|oryCun1|scaffold_207565 (1934-1560)
               

               
               12-212, gnl|panTro1|chr4 (74594413-74594005)
               

               
               12-212, gnl|rheMac2|chr6 (41793536-41793944)
               

               
               12-212, gnl|rn3|chr2 (53812542-53812214)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-212, gnl|bosTau2|chr20 (19457580-19457380)
               

               
               12-212, gnl|canFam2|chr4 (70863430-70863020)
               

               
               12-212, gnl|dasNov1|scaffold_63957 (10775-11200)
               

               
               12-212, gnl|echTel1|scaffold_287501 (42663-43054)
               

               
               12-212, gnl|hg17|chr5 (41961101-41961509)
               

               
               12-212, gnl|Hg17|chr5 (41961162-41961357)
               

               
               12-212, gnl|loxAfr1|scaffold_1154 (24410-24052)
               

               
               12-212, gnl|mm7|chr15 (3807138-3806810)
               

               
               12-212, gnl|Mm7|chr15 (3807100-3806901)
               

               
               12-212, gnl|monDom2|scaffold_20 (28872607-28872181)
               

               
               12-212, gnl|oryCun1|scaffold_207565 (1934-1560)
               

               
               12-212, gnl|panTro1|chr4 (74594413-74594005)
               

               
               12-212, gnl|rheMac2|chr6 (41793536-41793944)
               

               
               12-212, gnl|rn3|chr2 (53812542-53812214)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               csk (0.140746)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.140746)

	12-212, gnl\|bosTau2\|chr20 (19457580-19457380)
	12-212, gnl\|canFam2\|chr4 (70863430-70863020)
	12-212, gnl\|dasNov1\|scaffold_63957 (10775-11200)
	12-212, gnl\|echTel1\|scaffold_287501 (42663-43054)
	12-212, gnl\|hg17\|chr5 (41961101-41961509)
	12-212, gnl\|Hg17\|chr5 (41961162-41961357)
	12-212, gnl\|loxAfr1\|scaffold_1154 (24410-24052)
	12-212, gnl\|mm7\|chr15 (3807138-3806810)
	12-212, gnl\|Mm7\|chr15 (3807100-3806901)
	12-212, gnl\|monDom2\|scaffold_20 (28872607-28872181)
	12-212, gnl\|oryCun1\|scaffold_207565 (1934-1560)
	12-212, gnl\|panTro1\|chr4 (74594413-74594005)
	12-212, gnl\|rheMac2\|chr6 (41793536-41793944)
	12-212, gnl\|rn3\|chr2 (53812542-53812214)