Ss1.1-LyN1-MLN01D120034.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCGAGGCCGAGATGGCGGCGCTGGCGGCTTCCGGCCTGCTGCGCCCGATCCTTGCTCT GCGCTCCAGCATGGGCGCAGCTGTGCAGGTGCGCTTTGTCCATCCGAGTGCGGCCACGGA CAGCCCAAGCAGCCAGCCTGCTGTGTCCCAGGCCGGAGCTGTGGTCTCCAAACCCACCAC ACTTCCCAGCAGCCGGGGCGAGTATGTGGTGGCCAAGCTGGATGACCTCGTCAACTGGGC CCGCCGGAGCTCCCTGTGGCCCATGACCTTCGGCCTGGCCTGCTGTGCCGTGGAGATGAT GCACATGGCAGCGCCACGCTACGACATGGACCGCTTTGGCGTGGTTTTCCGTGCCAGCCC ACGTCAGTCTGATGTGATGATCGTGGCCGGGACGCTCACCAACAAGATGGCCCCTGCACT CCGCAAGGTCTATGACCAGATGCCAGAGCCTCGTTATGTTGTGTCCATGGGGAGCTGTGC CAACGGAGGCGGCTACTACCACTACTCCTACTCTGTCGTGCGGGGCTGCGACCGAATCGT GCCCGTGGATATCTACGTCCCAGGCTGCCCGCCCACAGCCGAGGCCCTGCTCTACGGCAT CCTGCAGCTGCAGAGGAAGATCAAGCGGGAGAAGAGACTGCGGATCTGGTACCGCAGGTA GTGCTGGCCATCTGGCTGCCTTGCGGTGTCTGTGTGGGCGTCATCACGAGAGGCGGTCAA TAAACCTGATAAACCCAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCGAGGCCGAGATGGCGGCGCTGGCGGCTTCCGGCCTGCTGCGCCCGATCCTTGCTCT GCGCTCCAGCATGGGCGCAGCTGTGCAGGTGCGCTTTGTCCATCCGAGTGCGGCCACGGA CAGCCCAAGCAGCCAGCCTGCTGTGTCCCAGGCCGGAGCTGTGGTCTCCAAACCCACCAC ACTTCCCAGCAGCCGGGGCGAGTATGTGGTGGCCAAGCTGGATGACCTCGTCAACTGGGC CCGCCGGAGCTCCCTGTGGCCCATGACCTTCGGCCTGGCCTGCTGTGCCGTGGAGATGAT GCACATGGCAGCGCCACGCTACGACATGGACCGCTTTGGCGTGGTTTTCCGTGCCAGCCC ACGTCAGTCTGATGTGATGATCGTGGCCGGGACGCTCACCAACAAGATGGCCCCTGCACT CCGCAAGGTCTATGACCAGATGCCAGAGCCTCGTTATGTTGTGTCCATGGGGAGCTGTGC CAACGGAGGCGGCTACTACCACTACTCCTACTCTGTCGTGCGGGGCTGCGACCGAATCGT GCCCGTGGATATCTACGTCCCAGGCTGCCCGCCCACAGCCGAGGCCCTGCTCTACGGCAT CCTGCAGCTGCAGAGGAAGATCAAGCGGGAGAAGAGACTGCGGATCTGGTACCGCAGGTA GTGCTGGCCATCTGGCTGCCTTGCGGTGTCTGTGTGGGCGTCATCACGAGAGGCGGTCAA TAAACCTGATAAACCCAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 239-429, gnl|bosTau2|chr7 (29077981-29077791) | |
| 239-429, gnl|canFam2|chr20 (60586744-60586535) | |
| 239-429, gnl|danRer3|chr11 (3926944-3926759) | |
| 239-429, gnl|fr1|chrUn (88627379-88627186) | |
| 239-429, gnl|galGal2|chrUn (82789442-82789243) | |
| 239-429, gnl|hg17|chr19 (1341862-1342061) | |
| 239-429, gnl|Hg17|chr19 (1341862-1342051) | |
| 239-429, gnl|mm7|chr10 (80037129-80037322) | |
| 239-429, gnl|Mm7|chr10 (80037128-80037312) | |
| 239-429, gnl|monDom2|scaffold_75 (5894545-5894339) | |
| 239-429, gnl|panTro1|chr20 (1415918-1416117) | |
| 239-429, gnl|rheMac2|chr19 (1157147-1157346) | |
| 239-429, gnl|rn3|chr7 (10965896-10965700) | |
| 239-429, gnl|tetNig1|chr1 (14748585-14748781) | |
| 239-429, gnl|xenTro1|scaffold_868 (35215-35412) | |
| 562-736, gnl|bosTau2|chr7 (29076617-29076454) | |
| 562-736, gnl|canFam2|chr20 (60583824-60583708) | |
| 562-736, gnl|danRer3|chr11 (3922039-3921940) | |
| 562-736, gnl|fr1|chrUn (88626441-88626343) | |
| 562-736, gnl|galGal2|chrUn (82788297-82788192) | |
| 562-736, gnl|hg17|chr19 (1346381-1346495) | |
| 562-736, gnl|Hg17|chr19 (1346388-1346570) | |
| 562-736, gnl|loxAfr1|scaffold_97692 (5048-5162) | |
| 562-736, gnl|mm7|chr10 (80038920-80039032) | |
| 562-736, gnl|Mm7|chr10 (80038925-80039082) | |
| 562-736, gnl|monDom2|scaffold_75 (5886910-5886798) | |
| 562-736, gnl|panTro1|chr20 (1420825-1420939) | |
| 562-736, gnl|rheMac2|chr19 (1161894-1162008) | |
| 562-736, gnl|rn3|chr7 (10964081-10963969) | |
| 562-736, gnl|tetNig1|chr1 (14749259-14749359) | |
| 562-736, gnl|xenTro1|scaffold_868 (37690-37796) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 239-429, gnl|bosTau2|chr7 (29077981-29077791) | |
| 239-429, gnl|canFam2|chr20 (60586744-60586535) | |
| 239-429, gnl|danRer3|chr11 (3926944-3926759) | |
| 239-429, gnl|fr1|chrUn (88627379-88627186) | |
| 239-429, gnl|galGal2|chrUn (82789442-82789243) | |
| 239-429, gnl|hg17|chr19 (1341862-1342061) | |
| 239-429, gnl|Hg17|chr19 (1341862-1342051) | |
| 239-429, gnl|mm7|chr10 (80037129-80037322) | |
| 239-429, gnl|Mm7|chr10 (80037128-80037312) | |
| 239-429, gnl|monDom2|scaffold_75 (5894545-5894339) | |
| 239-429, gnl|panTro1|chr20 (1415918-1416117) | |
| 239-429, gnl|rheMac2|chr19 (1157147-1157346) | |
| 239-429, gnl|rn3|chr7 (10965896-10965700) | |
| 239-429, gnl|tetNig1|chr1 (14748585-14748781) | |
| 239-429, gnl|xenTro1|scaffold_868 (35215-35412) | |
| 562-736, gnl|bosTau2|chr7 (29076617-29076454) | |
| 562-736, gnl|canFam2|chr20 (60583824-60583708) | |
| 562-736, gnl|danRer3|chr11 (3922039-3921940) | |
| 562-736, gnl|fr1|chrUn (88626441-88626343) | |
| 562-736, gnl|galGal2|chrUn (82788297-82788192) | |
| 562-736, gnl|hg17|chr19 (1346381-1346495) | |
| 562-736, gnl|Hg17|chr19 (1346388-1346570) | |
| 562-736, gnl|loxAfr1|scaffold_97692 (5048-5162) | |
| 562-736, gnl|mm7|chr10 (80038920-80039032) | |
| 562-736, gnl|Mm7|chr10 (80038925-80039082) | |
| 562-736, gnl|monDom2|scaffold_75 (5886910-5886798) | |
| 562-736, gnl|panTro1|chr20 (1420825-1420939) | |
| 562-736, gnl|rheMac2|chr19 (1161894-1162008) | |
| 562-736, gnl|rn3|chr7 (10964081-10963969) | |
| 562-736, gnl|tetNig1|chr1 (14749259-14749359) | |
| 562-736, gnl|xenTro1|scaffold_868 (37690-37796) |
| Expressed library(ies): 36 entry(ies) | More info |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
| hlv (1.81033) | |
| che (1.09051) | |
| hea (0.817996) | |
| ssp (0.677599) | |
| mas (0.630915) | |
| eep (0.61282) | |
| hyp (0.571347) | |
| pgl (0.473934) | |
| pla (0.401016) | |
| fcc (0.39557) | |
| elu (0.385356) | |
| ton (0.351) | |
| cov (0.264306) | |
| ese (0.253004) | |
| med (0.232504) | |
| ece (0.229305) | |
| tes (0.207814) | |
| fli (0.202881) | |
| nbm (0.198649) | |
| jej (0.197844) | |
| eje (0.197668) | |
| col (0.195008) | |
| nep (0.183925) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| duo (0.172801) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| nco (0.161734) | |
| cli (0.152812) | |
| pty (0.142714) | |
| cst (0.140036) | |
| ecc (0.115035) | |
| ldo (0.0970026) |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (1.81033) | |
| che (1.09051) | |
| hea (0.817996) | |
| ssp (0.677599) | |
| mas (0.630915) | |
| eep (0.61282) | |
| hyp (0.571347) | |
| pgl (0.473934) | |
| pla (0.401016) | |
| fcc (0.39557) | |
| elu (0.385356) | |
| ton (0.351) | |
| cov (0.264306) | |
| ese (0.253004) | |
| med (0.232504) | |
| ece (0.229305) | |
| tes (0.207814) | |
| fli (0.202881) | |
| nbm (0.198649) | |
| jej (0.197844) | |
| eje (0.197668) | |
| col (0.195008) | |
| nep (0.183925) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| duo (0.172801) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| nco (0.161734) | |
| cli (0.152812) | |
| pty (0.142714) | |
| cst (0.140036) | |
| ecc (0.115035) | |
| ldo (0.0970026) |