Ss1.1-LyN1-MLN01D120047.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTCTCATTTATTGATGCTCCCTAGGGCTGTGAAGAAAGCTCACAAAATCTCTATCTTT GAGGCCCCCCTTCTGGGGTAAAAAGCAAGCAAACCAAACAGCTCCATCCCTGAGGTGACT GACCTTGGTTAGGGAGGGTGATGGGGCCAGATCACAGGGCAGAGGAGCTCAGATTTTGGA GCGAATGTAGATACATTAGGCTCATGGGGTGAGGGGATGCAGCGGGGTTGGAGCTGAGGT CCAGTTATTGGCCTAGGCTCTGGGTGAAGGGGTGTTTTTGCTGGAAGCAGTGGGAGGGAT TATAGTGGTGGGCGGAGCCAGGGCAGTAAGCAGCTCAGGCGATTGGACAAGTGCCAGTGG GCTTGGCTCTGGGGCACTGGGCTAGGTCAGCAGTTGTGCCTCTTCTCGCAGATCCAGCTG TCGTCTTTGCTGTTGCACGGTGCGTCATTCCACATCCCCGTCCGTAGCATCATGATGCAG TCCTCGCGCCCCAGAGAGTCATTGGGTTCCCCCAGATTCCAGTGGCTGAAGCTGAGTGGG ACTCCATCCACCCACTGGTAGCTCTGGATTTTGCGCGCCCTGCGCACAGCCCTCAGGCCC AGCCAGTAGCCGCGGCCGGCAGTATTCCGACTCAGGAAGCCCTGCTCCTCCAGGCCCCCA ACAATCACCAGGTGCGCGCCCGCACCCTCGCAGTGGCTCTGAGCCTCCACCCACGTGGCC CCTTGCGCCGAGAAAAAGTAACAAGAGCCCTGGAATGGCAGCCACGACTTGGGGCACTGC TCGCAGGAGCTGTTCTGGAACCGGACTCTCTCCAGCTCCCGGAAGAGCTCACTGCGGATG TTCTCACGGTCCCTACCGGCTTCAGCCAAGCCCTGGGTCACGCGCTCGCTCAGTTCCTTC AGGGCGCTCTCCTGCTCCAACAGCTTCGCCTTTGCCTCTCCAAGCTGGGTGTGCACCGTC TGCAGCTGCGCCTGCACCCCCAGGCAGCAGCTGTTGCAGGCTCGGACCTCCTCCTTCAAG ACCTTCAGAGTCGCCGTCTGCTTCGAGGCGTTTGTCCTCAGTAGATCCTGGTGGCCAAGC AGCGCCCCGCGCTCTGTGGAGGCCTTGGAAAATAGGATGCTCAGAACGAGGGCCCACAGG ACTGTGACGACCACCAGACCAAAGGCCAGGAGGAGGGATCTCTGTCCCCAGTGTCCCCAG TGCCCTCCAGGGACCTCCTCCAGCTTGTTGTCCCACTTGCTGTACCCGGCAGTGTCCATG GTAAGCAGGTGCCCTGCTCTGGGCATAGATATAAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTCTCATTTATTGATGCTCCCTAGGGCTGTGAAGAAAGCTCACAAAATCTCTATCTTT GAGGCCCCCCTTCTGGGGTAAAAAGCAAGCAAACCAAACAGCTCCATCCCTGAGGTGACT GACCTTGGTTAGGGAGGGTGATGGGGCCAGATCACAGGGCAGAGGAGCTCAGATTTTGGA GCGAATGTAGATACATTAGGCTCATGGGGTGAGGGGATGCAGCGGGGTTGGAGCTGAGGT CCAGTTATTGGCCTAGGCTCTGGGTGAAGGGGTGTTTTTGCTGGAAGCAGTGGGAGGGAT TATAGTGGTGGGCGGAGCCAGGGCAGTAAGCAGCTCAGGCGATTGGACAAGTGCCAGTGG GCTTGGCTCTGGGGCACTGGGCTAGGTCAGCAGTTGTGCCTCTTCTCGCAGATCCAGCTG TCGTCTTTGCTGTTGCACGGTGCGTCATTCCACATCCCCGTCCGTAGCATCATGATGCAG TCCTCGCGCCCCAGAGAGTCATTGGGTTCCCCCAGATTCCAGTGGCTGAAGCTGAGTGGG ACTCCATCCACCCACTGGTAGCTCTGGATTTTGCGCGCCCTGCGCACAGCCCTCAGGCCC AGCCAGTAGCCGCGGCCGGCAGTATTCCGACTCAGGAAGCCCTGCTCCTCCAGGCCCCCA ACAATCACCAGGTGCGCGCCCGCACCCTCGCAGTGGCTCTGAGCCTCCACCCACGTGGCC CCTTGCGCCGAGAAAAAGTAACAAGAGCCCTGGAATGGCAGCCACGACTTGGGGCACTGC TCGCAGGAGCTGTTCTGGAACCGGACTCTCTCCAGCTCCCGGAAGAGCTCACTGCGGATG TTCTCACGGTCCCTACCGGCTTCAGCCAAGCCCTGGGTCACGCGCTCGCTCAGTTCCTTC AGGGCGCTCTCCTGCTCCAACAGCTTCGCCTTTGCCTCTCCAAGCTGGGTGTGCACCGTC TGCAGCTGCGCCTGCACCCCCAGGCAGCAGCTGTTGCAGGCTCGGACCTCCTCCTTCAAG ACCTTCAGAGTCGCCGTCTGCTTCGAGGCGTTTGTCCTCAGTAGATCCTGGTGGCCAAGC AGCGCCCCGCGCTCTGTGGAGGCCTTGGAAAATAGGATGCTCAGAACGAGGGCCCACAGG ACTGTGACGACCACCAGACCAAAGGCCAGGAGGAGGGATCTCTGTCCCCAGTGTCCCCAG TGCCCTCCAGGGACCTCCTCCAGCTTGTTGTCCCACTTGCTGTACCCGGCAGTGTCCATG GTAAGCAGGTGCCCTGCTCTGGGCATAGATATAAAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 2-531, gnl|bosTau2|chr7 (12464049-12464593) | |
| 2-531, gnl|Hg17|chr19 (7699855-7700396) | |
| 2-531, gnl|Mm7|chr8 (3678500-3678974) | |
| 641-790, gnl|bosTau2|chr7 (12465083-12465232) | |
| 641-790, gnl|Hg17|chr19 (7700904-7701053) | |
| 641-790, gnl|Mm7|chr8 (3679828-3679977) | |
| 881-985, gnl|bosTau2|chr7 (12465870-12465974) | |
| 881-985, gnl|canFam2|chr20 (55479694-55479868) | |
| 881-985, gnl|echTel1|scaffold_212271 (1732-1591) | |
| 881-985, gnl|fr1|chrUn (341144022-341144229) | |
| 881-985, gnl|hg17|chr19 (7701581-7701741) | |
| 881-985, gnl|Hg17|chr19 (7701641-7701745) | |
| 881-985, gnl|mm7|chr8 (3680708-3680854) | |
| 881-985, gnl|Mm7|chr8 (3680754-3680858) | |
| 881-985, gnl|oryCun1|scaffold_180167 (427-288) | |
| 881-985, gnl|panTro1|chr20 (8042227-8042388) | |
| 881-985, gnl|rheMac2|chr19 (7681386-7681546) | |
| 881-985, gnl|rn3|chr12 (2415251-2415096) | |
| 1103-1206, gnl|bosTau2|chr7 (12466733-12466836) | |
| 1103-1206, gnl|canFam2|chr20 (55480967-55481207) | |
| 1103-1206, gnl|echTel1|scaffold_212271 (850-630) | |
| 1103-1206, gnl|hg17|chr19 (7702539-7702746) | |
| 1103-1206, gnl|Hg17|chr19 (7702547-7702659) | |
| 1103-1206, gnl|loxAfr1|scaffold_17161 (11763-11997) | |
| 1103-1206, gnl|mm7|chr8 (3681881-3682085) | |
| 1103-1206, gnl|Mm7|chr8 (3681888-3682000) | |
| 1103-1206, gnl|oryCun1|scaffold_79407 (960-739) | |
| 1103-1206, gnl|panTro1|chr20 (8043186-8043393) | |
| 1103-1206, gnl|rheMac2|chr19 (7682327-7682534) | |
| 1103-1206, gnl|rn3|chr12 (2414034-2413829) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-531, gnl|bosTau2|chr7 (12464049-12464593) | |
| 2-531, gnl|Hg17|chr19 (7699855-7700396) | |
| 2-531, gnl|Mm7|chr8 (3678500-3678974) | |
| 641-790, gnl|bosTau2|chr7 (12465083-12465232) | |
| 641-790, gnl|Hg17|chr19 (7700904-7701053) | |
| 641-790, gnl|Mm7|chr8 (3679828-3679977) | |
| 881-985, gnl|bosTau2|chr7 (12465870-12465974) | |
| 881-985, gnl|canFam2|chr20 (55479694-55479868) | |
| 881-985, gnl|echTel1|scaffold_212271 (1732-1591) | |
| 881-985, gnl|fr1|chrUn (341144022-341144229) | |
| 881-985, gnl|hg17|chr19 (7701581-7701741) | |
| 881-985, gnl|Hg17|chr19 (7701641-7701745) | |
| 881-985, gnl|mm7|chr8 (3680708-3680854) | |
| 881-985, gnl|Mm7|chr8 (3680754-3680858) | |
| 881-985, gnl|oryCun1|scaffold_180167 (427-288) | |
| 881-985, gnl|panTro1|chr20 (8042227-8042388) | |
| 881-985, gnl|rheMac2|chr19 (7681386-7681546) | |
| 881-985, gnl|rn3|chr12 (2415251-2415096) | |
| 1103-1206, gnl|bosTau2|chr7 (12466733-12466836) | |
| 1103-1206, gnl|canFam2|chr20 (55480967-55481207) | |
| 1103-1206, gnl|echTel1|scaffold_212271 (850-630) | |
| 1103-1206, gnl|hg17|chr19 (7702539-7702746) | |
| 1103-1206, gnl|Hg17|chr19 (7702547-7702659) | |
| 1103-1206, gnl|loxAfr1|scaffold_17161 (11763-11997) | |
| 1103-1206, gnl|mm7|chr8 (3681881-3682085) | |
| 1103-1206, gnl|Mm7|chr8 (3681888-3682000) | |
| 1103-1206, gnl|oryCun1|scaffold_79407 (960-739) | |
| 1103-1206, gnl|panTro1|chr20 (8043186-8043393) | |
| 1103-1206, gnl|rheMac2|chr19 (7682327-7682534) | |
| 1103-1206, gnl|rn3|chr12 (2414034-2413829) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| cly (1.80963) | |
| lnt (1.13847) | |
| cag (0.604778) | |
| cty (0.31224) | |
| cli (0.305623) | |
| fli (0.202881) | |
| ese (0.126502) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cly (1.80963) | |
| lnt (1.13847) | |
| cag (0.604778) | |
| cty (0.31224) | |
| cli (0.305623) | |
| fli (0.202881) | |
| ese (0.126502) |