Non-Coding RNA Search

Ss1.1-LyN1-MLN01D120048.5

Sequence:


               
               TTCCGGGGCGGTGTGAGGTGGAAGAGGACTCCGAATGGGTCGCAGCCGCAGCCGCTCTCC
GCGGAGGGAGCGTAGGAGATCCCGGTCCACATCCCGGGAGAGAGAACGCAGGCGCCGAGA
AAGGTCCCGGTCCCGCGAGCGAGATCGGAGAAGGAGCCGCTCTCGTTCCCCCCACAGAAG
ACGTTCCAGGTCTCCAAGGCGACATAGATCCACATCTCCCTCCCCTTCTCGACTGAAAGA
AAGAAGAGACGAAGAAAAGAAAGAAACAAAAGAAATAAAGAGCAAAGAACGTCAGATTAC
TGAGGAAGACTTAGAGGGCAAAACAGAGGAAGAAATAGAAATGATGAAGTTAATGGGATT
TGCCTCCTTTGACTCTACAAAAGGAAAAAAGGTGGATGGCTCTGTAAATGCCTATGCCAT
AAATGTGTCTCAGAAGAGGAAGTATAGGCAGTACATGAATCGAAAAGGTGGATTTAACAG
ACCTTTGGATTTCATTGCATGAGAATTGGAATGTTGAAGAATGATGTTTTCCCCTCATCT
TGATCAGAGCTGTGGATTTTGTATTTTGTATTTAATGTGCATCAAAAACAGGATCACAGT
CCTTCCTCCTTGTAAAGTAAGAAAATTTTATTTATGATGTGTGTAGTTCACTTACCCTGC
CTCAAAAAAAGGTTAAATATTACATTTTTTTCCTTTAGGAAATACCATTTGGGGCAGTCA
TCAACCCCATTTTTTTGTCCTTATTCCTATGGAAGCTGTATATGTTCTCTTCTTGGATGC
TCCTTAGGACTTTTTAAAACACATGAAAGTAATTTGGAAGTAAGTTTCTCAAATAAAGCA
ATATTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCGGGGCGGTGTGAGGTGGAAGAGGACTCCGAATGGGTCGCAGCCGCAGCCGCTCTCC
GCGGAGGGAGCGTAGGAGATCCCGGTCCACATCCCGGGAGAGAGAACGCAGGCGCCGAGA
AAGGTCCCGGTCCCGCGAGCGAGATCGGAGAAGGAGCCGCTCTCGTTCCCCCCACAGAAG
ACGTTCCAGGTCTCCAAGGCGACATAGATCCACATCTCCCTCCCCTTCTCGACTGAAAGA
AAGAAGAGACGAAGAAAAGAAAGAAACAAAAGAAATAAAGAGCAAAGAACGTCAGATTAC
TGAGGAAGACTTAGAGGGCAAAACAGAGGAAGAAATAGAAATGATGAAGTTAATGGGATT
TGCCTCCTTTGACTCTACAAAAGGAAAAAAGGTGGATGGCTCTGTAAATGCCTATGCCAT
AAATGTGTCTCAGAAGAGGAAGTATAGGCAGTACATGAATCGAAAAGGTGGATTTAACAG
ACCTTTGGATTTCATTGCATGAGAATTGGAATGTTGAAGAATGATGTTTTCCCCTCATCT
TGATCAGAGCTGTGGATTTTGTATTTTGTATTTAATGTGCATCAAAAACAGGATCACAGT
CCTTCCTCCTTGTAAAGTAAGAAAATTTTATTTATGATGTGTGTAGTTCACTTACCCTGC
CTCAAAAAAAGGTTAAATATTACATTTTTTTCCTTTAGGAAATACCATTTGGGGCAGTCA
TCAACCCCATTTTTTTGTCCTTATTCCTATGGAAGCTGTATATGTTCTCTTCTTGGATGC
TCCTTAGGACTTTTTAAAACACATGAAAGTAATTTGGAAGTAAGTTTCTCAAATAAAGCA
ATATTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q8WVK2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8WVK2_HUMAN

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               161-280, - strand, RNAz p=0.933032
               

               
               401-520, - strand, RNAz p=0.564965
               

               
               637-750, - strand, RNAz p=0.608971

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               161-280, - strand, RNAz p=0.933032
               

               
               401-520, - strand, RNAz p=0.564965
               

               
               637-750, - strand, RNAz p=0.608971

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-868, gnl|bosTau2|chr10 (9171290-9170474)
               

               
               1-868, gnl|Hg17|chr5 (132351722-132350569)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-868, gnl|bosTau2|chr10 (9171290-9170474)
               

               
               1-868, gnl|Hg17|chr5 (132351722-132350569)

Expressed library(ies): 38 entry(ies)

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Expressed library(ies): 38 entry(ies)

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               vin (1.33023)
               

               
               lin (1.01922)
               

               
               tbr (0.770891)
               

               
               isp (0.601504)
               

               
               fce (0.543183)
               

               
               bla (0.497389)
               

               
               ece (0.45861)
               

               
               spl (0.429553)
               

               
               ret (0.3862)
               

               
               thg (0.380373)
               

               
               nje (0.33184)
               

               
               fco (0.314416)
               

               
               csk (0.281492)
               

               
               sug (0.254582)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

Expressed library(ies): 38 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (1.33023)
               

               
               lin (1.01922)
               

               
               tbr (0.770891)
               

               
               isp (0.601504)
               

               
               fce (0.543183)
               

               
               bla (0.497389)
               

               
               ece (0.45861)
               

               
               spl (0.429553)
               

               
               ret (0.3862)
               

               
               thg (0.380373)
               

               
               nje (0.33184)
               

               
               fco (0.314416)
               

               
               csk (0.281492)
               

               
               sug (0.254582)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

	161-280, - strand, RNAz p=0.933032
	401-520, - strand, RNAz p=0.564965
	637-750, - strand, RNAz p=0.608971

	1-868, gnl\|bosTau2\|chr10 (9171290-9170474)
	1-868, gnl\|Hg17\|chr5 (132351722-132350569)

	vin (1.33023)
	lin (1.01922)
	tbr (0.770891)
	isp (0.601504)
	fce (0.543183)
	bla (0.497389)
	ece (0.45861)
	spl (0.429553)
	ret (0.3862)
	thg (0.380373)
	nje (0.33184)
	fco (0.314416)
	csk (0.281492)
	sug (0.254582)
	cbe (0.239234)
	hea (0.204499)
	aor (0.195274)
	ldo (0.194005)
	cmu (0.186393)
	mgm (0.180343)
	sto (0.179824)
	gul (0.177588)
	fty (0.17584)
	ill (0.175593)
	ton (0.1755)
	duo (0.172801)
	ski (0.146735)
	liv (0.146284)
	cst (0.140036)
	hlv (0.139256)
	ssp (0.13552)
	ste (0.135208)
	cov (0.132153)
	kid (0.129735)
	ova (0.129132)
	ese (0.126502)
	eru (0.120048)
	eje (0.0988338)