Ss1.1-LyN1-MLN01D120049.5
|
CGGCCGCCCCGTACCCGGAACAACAAAGCGAGAAAGACGGAGCCCGAGCCTTGGGGGCTC
CTAGCAACGGGCCGGGGCGGGAGTTCCATGGAGACTGGGGAGCGCGCCCGCCTCATCATC
ATCCTTGTCCTCCAGCTTATCCTTCGCGTCCGCCGAAACCGGCAGCAGCGCTGCCGCCGC
GTCCTCTGCCGCCGCCCGCTCTTCCCACGGATGTGATCTTCGTGGTGGGAAGCTAAGTTT
TTAAACTACCCCAATGGATGCAGACAGTGATGTTGCATTGGACATTCTAATTACAAATGT
AGTCTGTGTTTTTAGAACAAGATGCCATTTGAACTTAAGGAAGATTGCTTTGGAGGGAGC
AAATGTCATTTATAAGCGTGATGTTGGAAAAGTATTAATGAAGCTTAGAAAACCTAGAAT
TACAGCTACAATTTGGTCCTCAGGAAAAATTATTTGCACTGGAGCAACAAGTGAAGAAGA
AGCTAAATTTGGTGCCAGACGTTTAGCCCGCAGTCTCCAGAAACTAGGATTTCAGGTAAT
ATTTACAGATTTTAAGGTTGTTAACGTTTTGGCAGTTTGTAACATGCCGTTTGAAATCCG
TTTGCCGGAATTCACAAAGAACAATAGACCTCATGCCAGTTATGAACCTGAGCTTCATCC
TGCTGTGTGCTATCGGATAAAATCTCTAAGAGCTACATTACAGATTTTTTCAACAGGAAG
TATCACAGTAACAGGGCCCAATGTAAAGGCTGTTGCTACTGCTGTGGAACAGATTTACCC
ATTTGTGTTTGAAAGCAGGAAAGAAATTTTATAATTCATCGCTTAATTGGTTAGAATCCC
TAACTGAGCACCTTTTAAAACCTGCTGCACATTGGACTCAAAAGGAAAACTGGACCAACA
GTAATCGAGGAAATAGACTCTTTTATTCATTCACGGCTACAGTAAGCTCCAGTCCCTTCG
GATTTTATTTCAAACCTTGCTGTAATATAAAGAGGAAGTTTACAAGACATGACATTGCTG
CTTTTACAAAAGGACATTCTATTTATTTTCGCAGTAATTTTCATGTCCCCATAAGCAGAG
CTGTCACAGTGTGCACTACCTTAAATTGTTTTGTTGTCATTATTTTTTTTCCAGTTTGAG
CTAACGTGTTTTATTTGTGAATAGTCTTTTACATTTTTGTATGCTAATATGGGCACCAAA
GAACCTGTAAAAGTTATCTTTTTCAATTGAATGTGCACAAATAAAAGTTTGGAAAAGATC
TCTCTTCATATCCATTCTATAACTTTTATTCCCCATTTTCTATTTTAACAAAAATTGTAT
TCATAATTTTTTTTTAATCTATGCAAGCTTAGACTTTTGCTAAAGTGTGTTGGCTTCTTT
TTGAAGTGTATTTTGTAAATATATATATGCCACATGTGTAAAGTATCTTTTAATTCTCTG
TTACCAAATATCAAATAGGAATTTTTTTTCTTGCAGATTAGAAGTAAAAACATGTATATA
AATCCTAGAGAACCAGAGTAGAACTTTATAGTTTAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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CGGCCGCCCCGTACCCGGAACAACAAAGCGAGAAAGACGGAGCCCGAGCCTTGGGGGCTC
CTAGCAACGGGCCGGGGCGGGAGTTCCATGGAGACTGGGGAGCGCGCCCGCCTCATCATC
ATCCTTGTCCTCCAGCTTATCCTTCGCGTCCGCCGAAACCGGCAGCAGCGCTGCCGCCGC
GTCCTCTGCCGCCGCCCGCTCTTCCCACGGATGTGATCTTCGTGGTGGGAAGCTAAGTTT
TTAAACTACCCCAATGGATGCAGACAGTGATGTTGCATTGGACATTCTAATTACAAATGT
AGTCTGTGTTTTTAGAACAAGATGCCATTTGAACTTAAGGAAGATTGCTTTGGAGGGAGC
AAATGTCATTTATAAGCGTGATGTTGGAAAAGTATTAATGAAGCTTAGAAAACCTAGAAT
TACAGCTACAATTTGGTCCTCAGGAAAAATTATTTGCACTGGAGCAACAAGTGAAGAAGA
AGCTAAATTTGGTGCCAGACGTTTAGCCCGCAGTCTCCAGAAACTAGGATTTCAGGTAAT
ATTTACAGATTTTAAGGTTGTTAACGTTTTGGCAGTTTGTAACATGCCGTTTGAAATCCG
TTTGCCGGAATTCACAAAGAACAATAGACCTCATGCCAGTTATGAACCTGAGCTTCATCC
TGCTGTGTGCTATCGGATAAAATCTCTAAGAGCTACATTACAGATTTTTTCAACAGGAAG
TATCACAGTAACAGGGCCCAATGTAAAGGCTGTTGCTACTGCTGTGGAACAGATTTACCC
ATTTGTGTTTGAAAGCAGGAAAGAAATTTTATAATTCATCGCTTAATTGGTTAGAATCCC
TAACTGAGCACCTTTTAAAACCTGCTGCACATTGGACTCAAAAGGAAAACTGGACCAACA
GTAATCGAGGAAATAGACTCTTTTATTCATTCACGGCTACAGTAAGCTCCAGTCCCTTCG
GATTTTATTTCAAACCTTGCTGTAATATAAAGAGGAAGTTTACAAGACATGACATTGCTG
CTTTTACAAAAGGACATTCTATTTATTTTCGCAGTAATTTTCATGTCCCCATAAGCAGAG
CTGTCACAGTGTGCACTACCTTAAATTGTTTTGTTGTCATTATTTTTTTTCCAGTTTGAG
CTAACGTGTTTTATTTGTGAATAGTCTTTTACATTTTTGTATGCTAATATGGGCACCAAA
GAACCTGTAAAAGTTATCTTTTTCAATTGAATGTGCACAAATAAAAGTTTGGAAAAGATC
TCTCTTCATATCCATTCTATAACTTTTATTCCCCATTTTCTATTTTAACAAAAATTGTAT
TCATAATTTTTTTTTAATCTATGCAAGCTTAGACTTTTGCTAAAGTGTGTTGGCTTCTTT
TTGAAGTGTATTTTGTAAATATATATATGCCACATGTGTAAAGTATCTTTTAATTCTCTG
TTACCAAATATCAAATAGGAATTTTTTTTCTTGCAGATTAGAAGTAAAAACATGTATATA
AATCCTAGAGAACCAGAGTAGAACTTTATAGTTTAA
|
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gi|6755811|ref|NP_035733.1| |
Protein identifier
|
gi|6755811|ref|NP_035733.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-210, gnl|bosTau2|chr20 (33544176-33544385) |
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1-210, gnl|Hg17|chr6 (134316048-134316257) |
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1-210, gnl|Mm7|chr10_random (11637785-11637577) |
| |
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732-1536, gnl|bosTau2|chr9 (40665670-40664860) |
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732-1536, gnl|canFam2|chr9 (32595091-32594561) |
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732-1536, gnl|echTel1|scaffold_322735 (86470-87001) |
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732-1536, gnl|galGal2|chr3 (55166062-55165545) |
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732-1536, gnl|hg17|chr3 (173722864-173723395) |
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732-1536, gnl|Hg17|chr6 (134349789-134350628) |
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732-1536, gnl|loxAfr1|scaffold_52437 (6835-7374) |
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732-1536, gnl|mm7|chr10 (22462662-22462144) |
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732-1536, gnl|Mm7|chr10 (22462665-22461863) |
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732-1536, gnl|monDom2|scaffold_0 (77012926-77012382) |
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732-1536, gnl|oryCun1|scaffold_198681 (5313-5835) |
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732-1536, gnl|panTro1|chr2 (177253093-177253625) |
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732-1536, gnl|rheMac2|chr2 (114496892-114496365) |
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732-1536, gnl|rn3|chr1 (23322721-23323243) |
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732-1536, gnl|xenTro1|scaffold_481 (698224-698696) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-210, gnl|bosTau2|chr20 (33544176-33544385) |
|
1-210, gnl|Hg17|chr6 (134316048-134316257) |
|
1-210, gnl|Mm7|chr10_random (11637785-11637577) |
| |
|
732-1536, gnl|bosTau2|chr9 (40665670-40664860) |
|
732-1536, gnl|canFam2|chr9 (32595091-32594561) |
|
732-1536, gnl|echTel1|scaffold_322735 (86470-87001) |
|
732-1536, gnl|galGal2|chr3 (55166062-55165545) |
|
732-1536, gnl|hg17|chr3 (173722864-173723395) |
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732-1536, gnl|Hg17|chr6 (134349789-134350628) |
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732-1536, gnl|loxAfr1|scaffold_52437 (6835-7374) |
|
732-1536, gnl|mm7|chr10 (22462662-22462144) |
|
732-1536, gnl|Mm7|chr10 (22462665-22461863) |
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732-1536, gnl|monDom2|scaffold_0 (77012926-77012382) |
|
732-1536, gnl|oryCun1|scaffold_198681 (5313-5835) |
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732-1536, gnl|panTro1|chr2 (177253093-177253625) |
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732-1536, gnl|rheMac2|chr2 (114496892-114496365) |
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732-1536, gnl|rn3|chr1 (23322721-23323243) |
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732-1536, gnl|xenTro1|scaffold_481 (698224-698696) |
|
pro (0.512033) |
|
ski (0.29347) |
|
liv (0.292569) |
|
fce (0.271592) |
|
ova (0.258264) |
|
thg (0.253582) |
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mgp (0.230681) |
|
gul (0.177588) |
|
sin (0.174948) |
|
rec (0.17307) |
|
fhi (0.169578) |
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csp (0.161186) |
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mga (0.160205) |
|
kid (0.129735) |
|
ret (0.128733) |
|
tra (0.123092) |
|
eep (0.122564) |
|
ebs (0.118301) |
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med (0.116252) |
|
jca (0.11396) |
|
jej (0.0989218) |
|
ldo (0.0970026) |
|
pro (0.512033) |
|
ski (0.29347) |
|
liv (0.292569) |
|
fce (0.271592) |
|
ova (0.258264) |
|
thg (0.253582) |
|
mgp (0.230681) |
|
gul (0.177588) |
|
sin (0.174948) |
|
rec (0.17307) |
|
fhi (0.169578) |
|
csp (0.161186) |
|
mga (0.160205) |
|
kid (0.129735) |
|
ret (0.128733) |
|
tra (0.123092) |
|
eep (0.122564) |
|
ebs (0.118301) |
|
med (0.116252) |
|
jca (0.11396) |
|
jej (0.0989218) |
|
ldo (0.0970026) |
