Ss1.1-LyN1-MLN01D120057.5.133
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGGGTGGAGGAGGGCCACAGTATCCATTTGAGTGGGACTTGCCTGCTCCCTTCACACAC TGTCCTCTCCTGTTCTCCAGCATGTTGCATCTGTGTTTCTCCAGAGGCTTTTGGATGGCG GCTCTGACCGTGATGCTGGTGGTGCTGAGCCCTCCCTTGGCTTTGGCCAGGGACACCCCA CCGCATTTCTTCTTTATGGAGAAATTCGAGTGTCATTTCTTCAACGGGACCGAGCGGGTG AGGTTATTGGACAGGCATTACTATAACGGAGAGGAGATCTTGCGCTTCGATAGCGACGTG GGCGAGTACCGGGCGGTGACTGAGCTGGGGCGGCCAGAAGCCAAGGACTGGAACAGCCGG AAGGACATCCTGGAGCAGAGGCGGGCGGAGGTGGACACGTACTGCAGACACAACTACAGG ATCTCGGATACATTCCTGGTGCCGCGGCGAGCTGAGCCCACGGTGACAGTGTATCCTGCA AAGACCCAGCCCCTGCAGCACCACAACCTCCTGGTCTGCTCTGTGACCGGGTTCTACCCA GGCCACGTGGAGGTCAGGTGGTTCCGGAATGGCCAGGAAGAGGCGGCGGGGGTGGTCTCC ACAGGCCTGATCCCTAATGGAGACTGGACCTTCCAGACCATGGTGATGCTTGAAACGGTT CCTCAGAGTGGAGAGGTCTACAGCTGCCGAGTGGAGCACCCCAGCCTGACGAGCCCCGTC ACAGTGGAATGGAGGGCACGGTCTGAATCTGCTCAGGGCAAGATGATGAGTGGGGTCGGG GGCTTCGTCCTGGGTCTGCTCTTTGTTGCTGTGGGGCTGTTCATCTACTTCAAGAATCAG AAAGGACGCCCTGCCCTTCAGCCAACAGGCCTCCTGAGCTGAAGTGCAGGTGGTGACACT CCAAGCAAGCATCCTCTGTGCCAGCGTCTTCACAGCATGAGAAGGCTCCTGCTATGCTCT GCGTCCTCCCCCAGGAGAGCTCTTCCTCAGACTCTCCTTTGCTCCTGGTTCAGGGACCCT GCAGAAAAGGTCTTTTGATGGCTTTCTCAGCCTCCCCCCTTTGACTTGGAAGTTCCTGGC ATTGATTGCTGTGCCTATGTTCATTTTTCTTTCTTTTTTTTTTCCTGGTTGGTCCCTGTT GTTTTCGATGTTACTGCCTCCTGTGCATCTGAACTCATCCACTGCCCATATTACCTTATT ATGTTTTTCTCCAATAAATATGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGGGTGGAGGAGGGCCACAGTATCCATTTGAGTGGGACTTGCCTGCTCCCTTCACACAC TGTCCTCTCCTGTTCTCCAGCATGTTGCATCTGTGTTTCTCCAGAGGCTTTTGGATGGCG GCTCTGACCGTGATGCTGGTGGTGCTGAGCCCTCCCTTGGCTTTGGCCAGGGACACCCCA CCGCATTTCTTCTTTATGGAGAAATTCGAGTGTCATTTCTTCAACGGGACCGAGCGGGTG AGGTTATTGGACAGGCATTACTATAACGGAGAGGAGATCTTGCGCTTCGATAGCGACGTG GGCGAGTACCGGGCGGTGACTGAGCTGGGGCGGCCAGAAGCCAAGGACTGGAACAGCCGG AAGGACATCCTGGAGCAGAGGCGGGCGGAGGTGGACACGTACTGCAGACACAACTACAGG ATCTCGGATACATTCCTGGTGCCGCGGCGAGCTGAGCCCACGGTGACAGTGTATCCTGCA AAGACCCAGCCCCTGCAGCACCACAACCTCCTGGTCTGCTCTGTGACCGGGTTCTACCCA GGCCACGTGGAGGTCAGGTGGTTCCGGAATGGCCAGGAAGAGGCGGCGGGGGTGGTCTCC ACAGGCCTGATCCCTAATGGAGACTGGACCTTCCAGACCATGGTGATGCTTGAAACGGTT CCTCAGAGTGGAGAGGTCTACAGCTGCCGAGTGGAGCACCCCAGCCTGACGAGCCCCGTC ACAGTGGAATGGAGGGCACGGTCTGAATCTGCTCAGGGCAAGATGATGAGTGGGGTCGGG GGCTTCGTCCTGGGTCTGCTCTTTGTTGCTGTGGGGCTGTTCATCTACTTCAAGAATCAG AAAGGACGCCCTGCCCTTCAGCCAACAGGCCTCCTGAGCTGAAGTGCAGGTGGTGACACT CCAAGCAAGCATCCTCTGTGCCAGCGTCTTCACAGCATGAGAAGGCTCCTGCTATGCTCT GCGTCCTCCCCCAGGAGAGCTCTTCCTCAGACTCTCCTTTGCTCCTGGTTCAGGGACCCT GCAGAAAAGGTCTTTTGATGGCTTTCTCAGCCTCCCCCCTTTGACTTGGAAGTTCCTGGC ATTGATTGCTGTGCCTATGTTCATTTTTCTTTCTTTTTTTTTTCCTGGTTGGTCCCTGTT GTTTTCGATGTTACTGCCTCCTGTGCATCTGAACTCATCCACTGCCCATATTACCTTATT ATGTTTTTCTCCAATAAATATGGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 1-181, gnl|bosTau2|chr23 (21236029-21236209) | |
| 1-181, gnl|canFam2|chr12 (5254003-5254141) | |
| 1-181, gnl|dasNov1|scaffold_23750 (14255-14386) | |
| 1-181, gnl|echTel1|scaffold_103957 (609-463) | |
| 1-181, gnl|hg17|chr6 (32665390-32665536) | |
| 1-181, gnl|Hg17|chr6 (32665576-32665398) | |
| 1-181, gnl|loxAfr1|scaffold_36898 (7532-7395) | |
| 1-181, gnl|mm7|chr17 (32383382-32383244) | |
| 1-181, gnl|Mm7|chr17 (32383206-32383372) | |
| 1-181, gnl|monDom2|scaffold_42 (16267144-16266995) | |
| 1-181, gnl|oryCun1|scaffold_173411 (15197-15065) | |
| 1-181, gnl|panTro1|chr5 (33118451-33118597) | |
| 1-181, gnl|rheMac2|chr4 (32322304-32322450) | |
| 1-181, gnl|rn3|chr20 (4681120-4681258) | |
| 208-417, gnl|bosTau2|chr23 (5464267-5464058) | |
| 208-417, gnl|Hg17|chr6 (32891042-32890833) | |
| 208-417, gnl|Mm7|chr17 (32410520-32410726) | |
| 454-750, gnl|bosTau2|chr23 (21244789-21245086) | |
| 454-750, gnl|Hg17|chr6 (32657591-32657293) | |
| 454-750, gnl|Mm7|chr17 (32391497-32391797) | |
| 840-1224, gnl|bosTau2|chr23 (22937697-22938058) | |
| 840-1224, gnl|Hg17|chr6 (32628853-32628485) | |
| 840-1224, gnl|Mm7|chr17 (32393170-32393515) | |
| 866-1220, gnl|bosTau2|chr23 (21246706-21247056) | |
| 866-1220, gnl|Hg17|chr6 (32654862-32654534) | |
| 866-1220, gnl|Mm7|chr17 (32393196-32393511) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-181, gnl|bosTau2|chr23 (21236029-21236209) | |
| 1-181, gnl|canFam2|chr12 (5254003-5254141) | |
| 1-181, gnl|dasNov1|scaffold_23750 (14255-14386) | |
| 1-181, gnl|echTel1|scaffold_103957 (609-463) | |
| 1-181, gnl|hg17|chr6 (32665390-32665536) | |
| 1-181, gnl|Hg17|chr6 (32665576-32665398) | |
| 1-181, gnl|loxAfr1|scaffold_36898 (7532-7395) | |
| 1-181, gnl|mm7|chr17 (32383382-32383244) | |
| 1-181, gnl|Mm7|chr17 (32383206-32383372) | |
| 1-181, gnl|monDom2|scaffold_42 (16267144-16266995) | |
| 1-181, gnl|oryCun1|scaffold_173411 (15197-15065) | |
| 1-181, gnl|panTro1|chr5 (33118451-33118597) | |
| 1-181, gnl|rheMac2|chr4 (32322304-32322450) | |
| 1-181, gnl|rn3|chr20 (4681120-4681258) | |
| 208-417, gnl|bosTau2|chr23 (5464267-5464058) | |
| 208-417, gnl|Hg17|chr6 (32891042-32890833) | |
| 208-417, gnl|Mm7|chr17 (32410520-32410726) | |
| 454-750, gnl|bosTau2|chr23 (21244789-21245086) | |
| 454-750, gnl|Hg17|chr6 (32657591-32657293) | |
| 454-750, gnl|Mm7|chr17 (32391497-32391797) | |
| 840-1224, gnl|bosTau2|chr23 (22937697-22938058) | |
| 840-1224, gnl|Hg17|chr6 (32628853-32628485) | |
| 840-1224, gnl|Mm7|chr17 (32393170-32393515) | |
| 866-1220, gnl|bosTau2|chr23 (21246706-21247056) | |
| 866-1220, gnl|Hg17|chr6 (32654862-32654534) | |
| 866-1220, gnl|Mm7|chr17 (32393196-32393511) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| jej (0.692452) | |
| cly (0.482567) | |
| cag (0.453583) | |
| ill (0.351185) | |
| csp (0.322373) | |
| mas (0.210305) | |
| col (0.195008) | |
| nep (0.183925) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| clu (0.119646) | |
| cty (0.10408) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (0.692452) | |
| cly (0.482567) | |
| cag (0.453583) | |
| ill (0.351185) | |
| csp (0.322373) | |
| mas (0.210305) | |
| col (0.195008) | |
| nep (0.183925) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| clu (0.119646) | |
| cty (0.10408) |