Non-Coding RNA Search

Ss1.1-LyN1-MLN01E010030.5

Sequence:


               
               ATTCGGAAGAGGCTGATGATTTATACAACCTCATTTTCTTTTTCCCCCTCCAGAATGGGT
TCTAGCTGGGTTCCCTGGGTGGTGGCTTTGTTAGTGATGGTAATCAGGCTGGACTCCTCC
ATGACTCAAGGCAGAGATCCTCCAGAAGATTTTGTGATTCAGGCAAAGGCTGACTGTTAC
TTCACCAATGGGACACAAAGGGTGCAGTTTGTGGTCAGATTCATCTTTAACTTGGAGGAG
TTCGTACGTTTTGACAGCGACCTGGGGAAGTTTGTGGCCTTGACAGAGTTGGGGCAGCCT
GATGCTGAGCTGTGGAACAGTCGACCAGATATCCTGGAGAGCAGCAGAGCATCTGTGGAT
GTGCTCTGCAGACGTAACTACTGGCTGGGTGCGCCCCTCACCGTGGAGAGAAAAGTGCAA
CCGGAGGTGACAGTGCATCCGGAGAGGACCCCGTCCCTGCAGCTCCGCAACCTGCTGCTT
TGCTCTGTGACAGGGTTCTACCCAGGGGCCATCGAGATCAGGTGGTTCCGGAACGGGCAG
GAGCAGAGAGAGGGGGTCCTGGCCACTGGCCTCGTCAGGAATGGAGACTGGACCTTTCAG
ACAGTGGTGATGCTGGAAATGACTCCTGAGCTTGGGGACGTCTACACCTGCCTTGTTGAT
CATCCCAGCCTGCTGAGCCCCGTTTCTGTGGAGTGGAGTGAGAATCAGCTTCTTGTACTT
TCGGGGTCCATCTGACTCAAGACGGGTCCTGAGCTACCTCCATGCTCATCCTGGAGCTCA
GTCTGACTGTTCTTGGACAAAGCTGCTGATTGGAGTTGCAGCCTTCCTGGGGGGGCTAAC
CTTCCTCCTGGTGGGGATCATCATCCACGTCAGGGCCCGCAAAGGACGTGTGGAGACTCA
GCTGTCCGGTGATGAGCCACACTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCGGAAGAGGCTGATGATTTATACAACCTCATTTTCTTTTTCCCCCTCCAGAATGGGT
TCTAGCTGGGTTCCCTGGGTGGTGGCTTTGTTAGTGATGGTAATCAGGCTGGACTCCTCC
ATGACTCAAGGCAGAGATCCTCCAGAAGATTTTGTGATTCAGGCAAAGGCTGACTGTTAC
TTCACCAATGGGACACAAAGGGTGCAGTTTGTGGTCAGATTCATCTTTAACTTGGAGGAG
TTCGTACGTTTTGACAGCGACCTGGGGAAGTTTGTGGCCTTGACAGAGTTGGGGCAGCCT
GATGCTGAGCTGTGGAACAGTCGACCAGATATCCTGGAGAGCAGCAGAGCATCTGTGGAT
GTGCTCTGCAGACGTAACTACTGGCTGGGTGCGCCCCTCACCGTGGAGAGAAAAGTGCAA
CCGGAGGTGACAGTGCATCCGGAGAGGACCCCGTCCCTGCAGCTCCGCAACCTGCTGCTT
TGCTCTGTGACAGGGTTCTACCCAGGGGCCATCGAGATCAGGTGGTTCCGGAACGGGCAG
GAGCAGAGAGAGGGGGTCCTGGCCACTGGCCTCGTCAGGAATGGAGACTGGACCTTTCAG
ACAGTGGTGATGCTGGAAATGACTCCTGAGCTTGGGGACGTCTACACCTGCCTTGTTGAT
CATCCCAGCCTGCTGAGCCCCGTTTCTGTGGAGTGGAGTGAGAATCAGCTTCTTGTACTT
TCGGGGTCCATCTGACTCAAGACGGGTCCTGAGCTACCTCCATGCTCATCCTGGAGCTCA
GTCTGACTGTTCTTGGACAAAGCTGCTGATTGGAGTTGCAGCCTTCCTGGGGGGGCTAAC
CTTCCTCCTGGTGGGGATCATCATCCACGTCAGGGCCCGCAAAGGACGTGTGGAGACTCA
GCTGTCCGGTGATGAGCCACACTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55162802|emb|CAH63450.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55162802|emb|CAH63450.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               533-652, + strand, RNAz p=0.773787

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               533-652, + strand, RNAz p=0.773787

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               138-381, gnl|bosTau2|chr23 (5449027-5448784)
               

               
               138-381, gnl|canFam2|chr12 (5252299-5252492)
               

               
               138-381, gnl|dasNov1|scaffold_30303 (8508-8315)
               

               
               138-381, gnl|echTel1|scaffold_276379 (46886-47079)
               

               
               138-381, gnl|galGal2|chrUn (18461067-18461260)
               

               
               138-381, gnl|hg17|chr6 (32837443-32837633)
               

               
               138-381, gnl|Hg17|chr6 (32837689-32837449)
               

               
               138-381, gnl|loxAfr1|scaffold_25746 (11557-11725)
               

               
               138-381, gnl|mm7|chr17 (32342832-32342636)
               

               
               138-381, gnl|Mm7|chr17 (32342578-32342821)
               

               
               138-381, gnl|monDom2|scaffold_42 (16148334-16148141)
               

               
               138-381, gnl|oryCun1|scaffold_178605 (88637-88830)
               

               
               138-381, gnl|panTro1|chr5 (33280257-33280447)
               

               
               138-381, gnl|rheMac2|chr4 (32796124-32795937)
               

               
               138-381, gnl|rn3|chr20 (4734684-4734874)
               

               
               138-381, gnl|xenTro1|scaffold_917 (253164-252968)
               


               
               414-774, gnl|bosTau2|chr23 (5463580-5463212)
               

               
               414-774, gnl|Hg17|chr6 (32890358-32889986)
               

               
               414-774, gnl|Mm7|chr17 (32320256-32320610)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               138-381, gnl|bosTau2|chr23 (5449027-5448784)
               

               
               138-381, gnl|canFam2|chr12 (5252299-5252492)
               

               
               138-381, gnl|dasNov1|scaffold_30303 (8508-8315)
               

               
               138-381, gnl|echTel1|scaffold_276379 (46886-47079)
               

               
               138-381, gnl|galGal2|chrUn (18461067-18461260)
               

               
               138-381, gnl|hg17|chr6 (32837443-32837633)
               

               
               138-381, gnl|Hg17|chr6 (32837689-32837449)
               

               
               138-381, gnl|loxAfr1|scaffold_25746 (11557-11725)
               

               
               138-381, gnl|mm7|chr17 (32342832-32342636)
               

               
               138-381, gnl|Mm7|chr17 (32342578-32342821)
               

               
               138-381, gnl|monDom2|scaffold_42 (16148334-16148141)
               

               
               138-381, gnl|oryCun1|scaffold_178605 (88637-88830)
               

               
               138-381, gnl|panTro1|chr5 (33280257-33280447)
               

               
               138-381, gnl|rheMac2|chr4 (32796124-32795937)
               

               
               138-381, gnl|rn3|chr20 (4734684-4734874)
               

               
               138-381, gnl|xenTro1|scaffold_917 (253164-252968)
               


               
               414-774, gnl|bosTau2|chr23 (5463580-5463212)
               

               
               414-774, gnl|Hg17|chr6 (32890358-32889986)
               

               
               414-774, gnl|Mm7|chr17 (32320256-32320610)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	138-381, gnl\|bosTau2\|chr23 (5449027-5448784)
	138-381, gnl\|canFam2\|chr12 (5252299-5252492)
	138-381, gnl\|dasNov1\|scaffold_30303 (8508-8315)
	138-381, gnl\|echTel1\|scaffold_276379 (46886-47079)
	138-381, gnl\|galGal2\|chrUn (18461067-18461260)
	138-381, gnl\|hg17\|chr6 (32837443-32837633)
	138-381, gnl\|Hg17\|chr6 (32837689-32837449)
	138-381, gnl\|loxAfr1\|scaffold_25746 (11557-11725)
	138-381, gnl\|mm7\|chr17 (32342832-32342636)
	138-381, gnl\|Mm7\|chr17 (32342578-32342821)
	138-381, gnl\|monDom2\|scaffold_42 (16148334-16148141)
	138-381, gnl\|oryCun1\|scaffold_178605 (88637-88830)
	138-381, gnl\|panTro1\|chr5 (33280257-33280447)
	138-381, gnl\|rheMac2\|chr4 (32796124-32795937)
	138-381, gnl\|rn3\|chr20 (4734684-4734874)
	138-381, gnl\|xenTro1\|scaffold_917 (253164-252968)

	414-774, gnl\|bosTau2\|chr23 (5463580-5463212)
	414-774, gnl\|Hg17\|chr6 (32890358-32889986)
	414-774, gnl\|Mm7\|chr17 (32320256-32320610)