Ss1.1-LyN1-MLN01E010031.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCCGGGTGCCGCTGTCCTGCGAGCCCCAGACGCGGGCTCCGGGATGGGGTCAGCCGGCC TGGCGCGGCTGCATGGGCTCTTTGCCGCCTACAAGCCCCCGGGGCTAAAATGGAAGCATC TACGGGATACGGTGGAGCTGCAGCTTTTGAAAGGTCTCAATGCTGGGAAGCCTCCTGCTC CTGAACAGCGTGTTCGCTTCCTGCTGGGTCCGGTGGAAGGCAGTGAAGAGAAGGAGCTGA CCCTCACAGCCACCACTGTGCCCTCCCTCATCAACCATCCTCTGGTACGTGGACCAGCAT TCACCAGCCTGAAGGTTGGCGTGGGACACCGACTGGATGCCCAGGCGTCTGGGGTGCTGG TGCTCGGCGTGGGACACGGACGCAGGCTCCTCACAGACATGTACAACGCCCACCTCACCA AGGATTACACCGTGCGTGGCCTCCTGGGCAAGGCCACAGACGACTTCTGTGAGGACGGGC GGCTGGTGGAGAAGACGACTTTTGACCACGTGACCAGAGAGAAGCTGGACCGCATCCTGG CCCTGATCCAGGGTTCCCATCAGAAGGCCCTGGTGATGTACTCCAACCTCGACCTGCAGA CCCAGGAGGCCTATGAGATGGCCGTGAGCGGCGTGATCCGGCCCATGAACAAGTCCCCGA TGCTAATCACCGGCATCCGATGCCTCCAGTTTGCACCCCCGGAATTCCTCTTGGAGGTGC AGTGCATGCATGAGACACAGAAGCAGCTGCGGAGGCTGGTGCATGAAATTGGCCTGGAGC TGAAGAGTTCCGCTGTCTGCACCCAGGTGCGGCGGACACGCGATGGCTTCTTCACCCTGG ACGACGCCCTCCTGAGGACCCAGTGGGACCTACATAGCATCCAGGATGCCATCCAGGCCG CAGTGCCCCGGGTGGCAGCAGAGTTGGAGAAGAGCTTGAGGCCGGGGCTGGCTACCCAGC CGCTCCCTGGTCCAGGCCGGTCCTGGGACTCCGAGAGGCCAAGCCCCGCCTTGGGACCGG ACAGCCATGTGGGGCATTGAATGGCCGGGCACTGGTGGAGCCATGGGTGTATAAAGATAA GAAGTGTTCCGCATTCGCTTGGCGACCCAGCAGTAATGAACCTGACTTGTCTCCATGAGG ACACGGGTTCAATCCCTGGCCTCACTCAGTGGGTTAAGTATCCAGCGTTGCCATGAGCTG TGGTGTATGTCTCGAAGATGCGGCTTGGATCTGCCATTGCTGTGGCTGCAGTGTAGACCG GTGGCTGTGGTGTAGACCGGCAGCTATATCTCCATTTTGACCCCTAGCCCAGGAACTTCC ATATGCTGATGGTTCGGCCCTAAAAAGATCAAAAGAAAAAAAGAAAAAGAATCGTTCATG AACCAAAACTGATGACTTTGCAGACCAGAGAGGAGGGGGAGCTTTTCTTACATGTGACGG AAAACCATGAAGCTCTAAGAGAAAAGATGAGCAGGAGTTCCCATCGTGGTACAGCAGAAA CGAATCCGACTAGGAACCATGAGGTTGCGGGTTCAATCCCTGGCATCACTCAGTGGGATG AGGATCTGGTGTTGCCATGAGCTGTGGTGTAGGTCGCAGACGTGGCTCGAATCTGGCGTT GCTATGGCACAGGCCGGAAGCTGCAGCTCCGATTGGACCCCTAGCCTGGGAACCTCCATG TGCTGCAGGTGCAGCCCTAAAAAGCAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCCGGGTGCCGCTGTCCTGCGAGCCCCAGACGCGGGCTCCGGGATGGGGTCAGCCGGCC TGGCGCGGCTGCATGGGCTCTTTGCCGCCTACAAGCCCCCGGGGCTAAAATGGAAGCATC TACGGGATACGGTGGAGCTGCAGCTTTTGAAAGGTCTCAATGCTGGGAAGCCTCCTGCTC CTGAACAGCGTGTTCGCTTCCTGCTGGGTCCGGTGGAAGGCAGTGAAGAGAAGGAGCTGA CCCTCACAGCCACCACTGTGCCCTCCCTCATCAACCATCCTCTGGTACGTGGACCAGCAT TCACCAGCCTGAAGGTTGGCGTGGGACACCGACTGGATGCCCAGGCGTCTGGGGTGCTGG TGCTCGGCGTGGGACACGGACGCAGGCTCCTCACAGACATGTACAACGCCCACCTCACCA AGGATTACACCGTGCGTGGCCTCCTGGGCAAGGCCACAGACGACTTCTGTGAGGACGGGC GGCTGGTGGAGAAGACGACTTTTGACCACGTGACCAGAGAGAAGCTGGACCGCATCCTGG CCCTGATCCAGGGTTCCCATCAGAAGGCCCTGGTGATGTACTCCAACCTCGACCTGCAGA CCCAGGAGGCCTATGAGATGGCCGTGAGCGGCGTGATCCGGCCCATGAACAAGTCCCCGA TGCTAATCACCGGCATCCGATGCCTCCAGTTTGCACCCCCGGAATTCCTCTTGGAGGTGC AGTGCATGCATGAGACACAGAAGCAGCTGCGGAGGCTGGTGCATGAAATTGGCCTGGAGC TGAAGAGTTCCGCTGTCTGCACCCAGGTGCGGCGGACACGCGATGGCTTCTTCACCCTGG ACGACGCCCTCCTGAGGACCCAGTGGGACCTACATAGCATCCAGGATGCCATCCAGGCCG CAGTGCCCCGGGTGGCAGCAGAGTTGGAGAAGAGCTTGAGGCCGGGGCTGGCTACCCAGC CGCTCCCTGGTCCAGGCCGGTCCTGGGACTCCGAGAGGCCAAGCCCCGCCTTGGGACCGG ACAGCCATGTGGGGCATTGAATGGCCGGGCACTGGTGGAGCCATGGGTGTATAAAGATAA GAAGTGTTCCGCATTCGCTTGGCGACCCAGCAGTAATGAACCTGACTTGTCTCCATGAGG ACACGGGTTCAATCCCTGGCCTCACTCAGTGGGTTAAGTATCCAGCGTTGCCATGAGCTG TGGTGTATGTCTCGAAGATGCGGCTTGGATCTGCCATTGCTGTGGCTGCAGTGTAGACCG GTGGCTGTGGTGTAGACCGGCAGCTATATCTCCATTTTGACCCCTAGCCCAGGAACTTCC ATATGCTGATGGTTCGGCCCTAAAAAGATCAAAAGAAAAAAAGAAAAAGAATCGTTCATG AACCAAAACTGATGACTTTGCAGACCAGAGAGGAGGGGGAGCTTTTCTTACATGTGACGG AAAACCATGAAGCTCTAAGAGAAAAGATGAGCAGGAGTTCCCATCGTGGTACAGCAGAAA CGAATCCGACTAGGAACCATGAGGTTGCGGGTTCAATCCCTGGCATCACTCAGTGGGATG AGGATCTGGTGTTGCCATGAGCTGTGGTGTAGGTCGCAGACGTGGCTCGAATCTGGCGTT GCTATGGCACAGGCCGGAAGCTGCAGCTCCGATTGGACCCCTAGCCTGGGAACCTCCATG TGCTGCAGGTGCAGCCCTAAAAAGCAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 874-1064, + strand, RNAz p=0.885395 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 874-1064, + strand, RNAz p=0.885395 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 152-285, gnl|bosTau2|chr11 (78204747-78204614) | |
| 152-285, gnl|canFam2|chr9 (58538787-58538633) | |
| 152-285, gnl|dasNov1|scaffold_71893 (3526-3372) | |
| 152-285, gnl|echTel1|scaffold_278444 (50043-49896) | |
| 152-285, gnl|hg17|chr9 (128163428-128163585) | |
| 152-285, gnl|Hg17|chr9 (128163565-128163432) | |
| 152-285, gnl|loxAfr1|scaffold_6293 (26642-26796) | |
| 152-285, gnl|mm7|chr2 (29793783-29793931) | |
| 152-285, gnl|Mm7|chr2 (29793920-29793787) | |
| 152-285, gnl|monDom2|scaffold_51 (2840338-2840481) | |
| 152-285, gnl|panTro1|chr11 (113011304-113011461) | |
| 152-285, gnl|rheMac2|chr15 (10553494-10553337) | |
| 152-285, gnl|rn3|chr3 (8773901-8774062) | |
| 578-712, gnl|bosTau2|chr11 (78195415-78195281) | |
| 578-712, gnl|canFam2|chr9 (58546566-58546402) | |
| 578-712, gnl|danRer3|chr6 (22822723-22822876) | |
| 578-712, gnl|dasNov1|scaffold_6313 (52641-52783) | |
| 578-712, gnl|echTel1|scaffold_165880 (9060-8898) | |
| 578-712, gnl|galGal2|chr17 (5754882-5755043) | |
| 578-712, gnl|hg17|chr9 (128152716-128152878) | |
| 578-712, gnl|Hg17|chr9 (128152856-128152722) | |
| 578-712, gnl|loxAfr1|scaffold_6293 (18797-18959) | |
| 578-712, gnl|mm7|chr2 (29786039-29786205) | |
| 578-712, gnl|Mm7|chr2 (29786179-29786045) | |
| 578-712, gnl|monDom2|scaffold_51 (2827070-2827224) | |
| 578-712, gnl|panTro1|chr11 (112986769-112986931) | |
| 578-712, gnl|rheMac2|chr15 (10565353-10565193) | |
| 578-712, gnl|rn3|chr11_random (368880-368745) | |
| 578-712, gnl|tetNig1|chr11 (5182671-5182833) | |
| 578-712, gnl|xenTro1|scaffold_302 (1221930-1222093) | |
| 714-1082, gnl|bosTau2|chr11 (78194478-78194110) | |
| 714-1082, gnl|Hg17|chr9 (128151709-128151340) | |
| 714-1082, gnl|Mm7|chr2 (29785268-29784891) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 152-285, gnl|bosTau2|chr11 (78204747-78204614) | |
| 152-285, gnl|canFam2|chr9 (58538787-58538633) | |
| 152-285, gnl|dasNov1|scaffold_71893 (3526-3372) | |
| 152-285, gnl|echTel1|scaffold_278444 (50043-49896) | |
| 152-285, gnl|hg17|chr9 (128163428-128163585) | |
| 152-285, gnl|Hg17|chr9 (128163565-128163432) | |
| 152-285, gnl|loxAfr1|scaffold_6293 (26642-26796) | |
| 152-285, gnl|mm7|chr2 (29793783-29793931) | |
| 152-285, gnl|Mm7|chr2 (29793920-29793787) | |
| 152-285, gnl|monDom2|scaffold_51 (2840338-2840481) | |
| 152-285, gnl|panTro1|chr11 (113011304-113011461) | |
| 152-285, gnl|rheMac2|chr15 (10553494-10553337) | |
| 152-285, gnl|rn3|chr3 (8773901-8774062) | |
| 578-712, gnl|bosTau2|chr11 (78195415-78195281) | |
| 578-712, gnl|canFam2|chr9 (58546566-58546402) | |
| 578-712, gnl|danRer3|chr6 (22822723-22822876) | |
| 578-712, gnl|dasNov1|scaffold_6313 (52641-52783) | |
| 578-712, gnl|echTel1|scaffold_165880 (9060-8898) | |
| 578-712, gnl|galGal2|chr17 (5754882-5755043) | |
| 578-712, gnl|hg17|chr9 (128152716-128152878) | |
| 578-712, gnl|Hg17|chr9 (128152856-128152722) | |
| 578-712, gnl|loxAfr1|scaffold_6293 (18797-18959) | |
| 578-712, gnl|mm7|chr2 (29786039-29786205) | |
| 578-712, gnl|Mm7|chr2 (29786179-29786045) | |
| 578-712, gnl|monDom2|scaffold_51 (2827070-2827224) | |
| 578-712, gnl|panTro1|chr11 (112986769-112986931) | |
| 578-712, gnl|rheMac2|chr15 (10565353-10565193) | |
| 578-712, gnl|rn3|chr11_random (368880-368745) | |
| 578-712, gnl|tetNig1|chr11 (5182671-5182833) | |
| 578-712, gnl|xenTro1|scaffold_302 (1221930-1222093) | |
| 714-1082, gnl|bosTau2|chr11 (78194478-78194110) | |
| 714-1082, gnl|Hg17|chr9 (128151709-128151340) | |
| 714-1082, gnl|Mm7|chr2 (29785268-29784891) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| fhi (0.339155) | |
| ssp (0.271039) | |
| mas (0.210305) | |
| cty (0.20816) | |
| hea (0.204499) | |
| ldo (0.194005) | |
| mcp (0.170648) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| pgl (0.118483) | |
| nbm (0.0993246) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.339155) | |
| ssp (0.271039) | |
| mas (0.210305) | |
| cty (0.20816) | |
| hea (0.204499) | |
| ldo (0.194005) | |
| mcp (0.170648) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| pgl (0.118483) | |
| nbm (0.0993246) |