Non-Coding RNA Search

Ss1.1-LyN1-MLN01E020061.5

Sequence:


               
               ATTGTATATTGCATTATTATCCTTCATAATAGAATTATAATGAGAAGATGAATTTATTAA
TTATTTCTCCTGATGGTAGATGTGAAATGGTGCTTCAAAGAATTCTTTATATGTGTGTGA
GTATGTGTGTACTCAGACATAGATTTTAAAGTATAAACTGGCTCTTTGAAAACAGGCCTG
TCATCTGAAAATGGGAAATTGGGACCTGCGACCTGCTGAAGTGTAGAAGAACTTGATGTT
GGGGTTTTTTTAAACCCCACTGAAGTTAATAATAAATTTAAAACAATTATATTCAAAATT
CACCTATTGAATTTTGAAAACCTTACTAAGAACTAAGAAAATGATTATATGTACTTATAT
TCTCAAACCCATTACATTCTGTTGTTGTTATATTCTGCCAAAAATGGGATGGAGTGGGAG
ATATAAACTGTTCTATCTGCTCTGCTAACAAAGTGAACCCAGAGACCAGCATTTTAGTTT
TTTTCTCCTTAAAAACGAACCTCCTAATTCTTGGTTAGAGCAGTTAACTTCAGTGAATAC
CTCTATTAAAGACTCAGCAAAAGGGTCGTCTGTGCCTCTTCAACTGTTCTCACCAAACTT
TCCTATATCTCTCTCGGCAGCTGGCTGAAGCAGCCTCCCGGGGCAAAAAAAAATATTGAA
AACAAGAAAAATGTCTCTATTTTCTCCATTCAAAATGGTAATGGGGAGTAATAGGAGAGC
TTTATGAATAATTTACTTAAACACAACAACAGTTAAACACAGTAAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGTATATTGCATTATTATCCTTCATAATAGAATTATAATGAGAAGATGAATTTATTAA
TTATTTCTCCTGATGGTAGATGTGAAATGGTGCTTCAAAGAATTCTTTATATGTGTGTGA
GTATGTGTGTACTCAGACATAGATTTTAAAGTATAAACTGGCTCTTTGAAAACAGGCCTG
TCATCTGAAAATGGGAAATTGGGACCTGCGACCTGCTGAAGTGTAGAAGAACTTGATGTT
GGGGTTTTTTTAAACCCCACTGAAGTTAATAATAAATTTAAAACAATTATATTCAAAATT
CACCTATTGAATTTTGAAAACCTTACTAAGAACTAAGAAAATGATTATATGTACTTATAT
TCTCAAACCCATTACATTCTGTTGTTGTTATATTCTGCCAAAAATGGGATGGAGTGGGAG
ATATAAACTGTTCTATCTGCTCTGCTAACAAAGTGAACCCAGAGACCAGCATTTTAGTTT
TTTTCTCCTTAAAAACGAACCTCCTAATTCTTGGTTAGAGCAGTTAACTTCAGTGAATAC
CTCTATTAAAGACTCAGCAAAAGGGTCGTCTGTGCCTCTTCAACTGTTCTCACCAAACTT
TCCTATATCTCTCTCGGCAGCTGGCTGAAGCAGCCTCCCGGGGCAAAAAAAAATATTGAA
AACAAGAAAAATGTCTCTATTTTCTCCATTCAAAATGGTAATGGGGAGTAATAGGAGAGC
TTTATGAATAATTTACTTAAACACAACAACAGTTAAACACAGTAAAGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               40-141, - strand, RNAz p=0.722006

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-141, - strand, RNAz p=0.722006

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-439, gnl|bosTau2|chr16 (36337169-36337618)
               

               
               1-439, gnl|Hg17|chr3 (114855424-114854654)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-439, gnl|bosTau2|chr16 (36337169-36337618)
               

               
               1-439, gnl|Hg17|chr3 (114855424-114854654)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cmu (0.186393)
               

               
               hyp (0.142837)
               

               
               bla (0.124347)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               hyp (0.142837)
               

               
               bla (0.124347)
               

               
               jej (0.0989218)

	1-439, gnl\|bosTau2\|chr16 (36337169-36337618)
	1-439, gnl\|Hg17\|chr3 (114855424-114854654)