Non-Coding RNA Search

Ss1.1-LyN1-MLN01E020071.5

Sequence:


               
               CTCTGAAGCGGTTAGTTCGATTTTAAGCTTCGAGGTTTGCCCCGCTGCCAGGCTGACTTT
TCTGATTGCTGATTTTTCTTTTTGAGAGCCTTCATCCAGCCACGGGGCCAGAATGTCGGG
GGGCAAATACGTAGACTCAGAGGGACATCTCTACACCGTCCCCATCCGGGAACAGGGCAA
CATCTACAAGCCCAACAACAAGGCCATGGCAGAGGAAATGAACGAGAAGCAAGTGTATGA
CGCGCACACCAAGGAGATAGACTTGGTCAACCGCGATCCCAAGCATCTCAACGACGACGT
TGTCAAGATTGATTTTGAAGATGTGATTGCAGAACCAGAAGGGACACACAGTTTCGATGG
CATCTGGAAGGCCAGCTTCACCACCTTCACTGTGACGAAGTACTGGTTTTACCGTTTGCT
GTCTGCCCTCTTTGGCATCCCAATGGCGCTCATCTGGGGCATTTACTTTGCCATTCTCTC
CTTCCTGCACATCTGGGCGGTTGTACCCTGCATTAAGAGTTTCCTGATTGAGATTCAGTG
CATCAGCCGTGTCTATTCCATCTACGTCCACACCTTCTGTGACCCGCTCTTTGAGGCTAT
TGGCAAAATATTCAGCAATATCCGCATCAACATGCAGAAAGAAATATAAGTGACATTTCA
AGGGTATAAGTATACCCAATTCTTCTTTGTCCCTTTTAATTTTCTTGGTGCCAATTTCGA
GTTTCAATTTGCCAGTACAGCAACACTATATGAATGAATTTTATTGATTCAGAACAAAGA
AATCATGCTCAGTTTTCATAACTACTATTTGTCTCTTCTGAGCTAATTCATCTATATTTG
GGGTGGTGAATTTTTAAAAGTCACTTAAAATATTTTCCTTACATTTGGATCATTGTTTTA
TTGGCTGAGATATGAACCTACTGTTGAAAGATAATTTGAGGGAAATATGAAGAACTGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTGAAGCGGTTAGTTCGATTTTAAGCTTCGAGGTTTGCCCCGCTGCCAGGCTGACTTT
TCTGATTGCTGATTTTTCTTTTTGAGAGCCTTCATCCAGCCACGGGGCCAGAATGTCGGG
GGGCAAATACGTAGACTCAGAGGGACATCTCTACACCGTCCCCATCCGGGAACAGGGCAA
CATCTACAAGCCCAACAACAAGGCCATGGCAGAGGAAATGAACGAGAAGCAAGTGTATGA
CGCGCACACCAAGGAGATAGACTTGGTCAACCGCGATCCCAAGCATCTCAACGACGACGT
TGTCAAGATTGATTTTGAAGATGTGATTGCAGAACCAGAAGGGACACACAGTTTCGATGG
CATCTGGAAGGCCAGCTTCACCACCTTCACTGTGACGAAGTACTGGTTTTACCGTTTGCT
GTCTGCCCTCTTTGGCATCCCAATGGCGCTCATCTGGGGCATTTACTTTGCCATTCTCTC
CTTCCTGCACATCTGGGCGGTTGTACCCTGCATTAAGAGTTTCCTGATTGAGATTCAGTG
CATCAGCCGTGTCTATTCCATCTACGTCCACACCTTCTGTGACCCGCTCTTTGAGGCTAT
TGGCAAAATATTCAGCAATATCCGCATCAACATGCAGAAAGAAATATAAGTGACATTTCA
AGGGTATAAGTATACCCAATTCTTCTTTGTCCCTTTTAATTTTCTTGGTGCCAATTTCGA
GTTTCAATTTGCCAGTACAGCAACACTATATGAATGAATTTTATTGATTCAGAACAAAGA
AATCATGCTCAGTTTTCATAACTACTATTTGTCTCTTCTGAGCTAATTCATCTATATTTG
GGGTGGTGAATTTTTAAAAGTCACTTAAAATATTTTCCTTACATTTGGATCATTGTTTTA
TTGGCTGAGATATGAACCTACTGTTGAAAGATAATTTGAGGGAAATATGAAGAACTGAGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|38322749|gb|AAR16300.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|38322749|gb|AAR16300.1|

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               306-650, gnl|bosTau2|chr22 (14331672-14332016)
               

               
               306-650, gnl|Hg17|chr3 (8762210-8762554)
               

               
               306-650, gnl|Mm7|chr6 (112633185-112633529)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               306-650, gnl|bosTau2|chr22 (14331672-14332016)
               

               
               306-650, gnl|Hg17|chr3 (8762210-8762554)
               

               
               306-650, gnl|Mm7|chr6 (112633185-112633529)

Expressed library(ies): 30 entry(ies)

More info

Expressed library(ies): 30 entry(ies)

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               csk (0.844476)
               

               
               bla (0.746083)
               

               
               fat (0.58971)
               

               
               nep (0.551775)
               

               
               pro (0.512033)
               

               
               cut (0.509771)
               

               
               rec (0.346141)
               

               
               eye (0.341006)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               liv (0.292569)
               

               
               nmm (0.265604)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               hlv (0.139256)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               spc (0.113366)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.844476)
               

               
               bla (0.746083)
               

               
               fat (0.58971)
               

               
               nep (0.551775)
               

               
               pro (0.512033)
               

               
               cut (0.509771)
               

               
               rec (0.346141)
               

               
               eye (0.341006)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               liv (0.292569)
               

               
               nmm (0.265604)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               hlv (0.139256)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               spc (0.113366)

	306-650, gnl\|bosTau2\|chr22 (14331672-14332016)
	306-650, gnl\|Hg17\|chr3 (8762210-8762554)
	306-650, gnl\|Mm7\|chr6 (112633185-112633529)

	csk (0.844476)
	bla (0.746083)
	fat (0.58971)
	nep (0.551775)
	pro (0.512033)
	cut (0.509771)
	rec (0.346141)
	eye (0.341006)
	vin (0.332557)
	sme (0.305437)
	liv (0.292569)
	nmm (0.265604)
	jca (0.22792)
	nms (0.213858)
	aor (0.195274)
	ldo (0.194005)
	nlu (0.191681)
	sag (0.182715)
	sto (0.179824)
	sin (0.174948)
	mcp (0.170648)
	nco (0.161734)
	mga (0.160205)
	isp (0.150376)
	hlv (0.139256)
	lyg (0.133103)
	ute (0.132784)
	pgl (0.118483)
	med (0.116252)
	spc (0.113366)