Non-Coding RNA Search

Ss1.1-LyN1-MLN01E030086.5

Sequence:


               
               GGCGGTTGGCGTTGCGCAGAAGGCGGCGGCGGCGGTGGCTTGTGGTCCGGCCGCACCACA
GAGGAACAGGCGAGGCGTTAGCGTGAGTGATCGGTCTCGACCCCCGGAACCCGGTGGCCT
TAGTCCTTCAGGTGGAACAGCGTGAGACATGGGAAAGAAAACCAAGCGGACAGCTGACAG
TTCTTCTTCAGAGGATGAGGAGGAGTATGTTGTGGAGAAGGTGCTAGACAGACGCGTGGT
TAAGGGGCAAGTGGAATATCTGCTGAAGTGGAAAGGCTTTTCCGAGGAGCACAATACTTG
GGAACCTGAGAAAAATTTGGATTGCCCTGAGCTAATTTCTGAGTTCATGAAAAAGTATAA
GAAGATGAAGGAGGGTGAAAATAACAAACCGAGGGAGAAGTCAGAAAGTAACAAGAGGAA
ATCCAATTTCTCCAACAGTGCTGATGATATCAAATCCAAAAAAAAGAGAGAGCAGAGCAA
TGATATCGCTCGGGGCTTTGAGAGAGGATTGGAACCAGAAAAGATCATTGGGGCGACAGA
TTCCTGTGGCGATTTAATGTTCCTAATGAAATGGAAAGACACAGATGAAGCAGACCTGGT
TCTTGCAAAAGAAGCTAATGTTAAATGTCCACAAATTGTGATAGCATTTTATGAAGAGAG
ACTGACGTGGCATGCATATCCTGAGGATGCGGAAAACAAAGAGAAAGAAACAGCAAAGAG
CTAAAGGAGGGGGTGGTCTCTGTCATTTCTCTTTGTACATAATACATTCACCTTCCTGCC
TCCTCTCCCTTCTACCCACCCCCTTCTATCCTAAACACATCCATAAAAAATGTGCTTATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGTTGGCGTTGCGCAGAAGGCGGCGGCGGCGGTGGCTTGTGGTCCGGCCGCACCACA
GAGGAACAGGCGAGGCGTTAGCGTGAGTGATCGGTCTCGACCCCCGGAACCCGGTGGCCT
TAGTCCTTCAGGTGGAACAGCGTGAGACATGGGAAAGAAAACCAAGCGGACAGCTGACAG
TTCTTCTTCAGAGGATGAGGAGGAGTATGTTGTGGAGAAGGTGCTAGACAGACGCGTGGT
TAAGGGGCAAGTGGAATATCTGCTGAAGTGGAAAGGCTTTTCCGAGGAGCACAATACTTG
GGAACCTGAGAAAAATTTGGATTGCCCTGAGCTAATTTCTGAGTTCATGAAAAAGTATAA
GAAGATGAAGGAGGGTGAAAATAACAAACCGAGGGAGAAGTCAGAAAGTAACAAGAGGAA
ATCCAATTTCTCCAACAGTGCTGATGATATCAAATCCAAAAAAAAGAGAGAGCAGAGCAA
TGATATCGCTCGGGGCTTTGAGAGAGGATTGGAACCAGAAAAGATCATTGGGGCGACAGA
TTCCTGTGGCGATTTAATGTTCCTAATGAAATGGAAAGACACAGATGAAGCAGACCTGGT
TCTTGCAAAAGAAGCTAATGTTAAATGTCCACAAATTGTGATAGCATTTTATGAAGAGAG
ACTGACGTGGCATGCATATCCTGAGGATGCGGAAAACAAAGAGAAAGAAACAGCAAAGAG
CTAAAGGAGGGGGTGGTCTCTGTCATTTCTCTTTGTACATAATACATTCACCTTCCTGCC
TCCTCTCCCTTCTACCCACCCCCTTCTATCCTAAACACATCCATAAAAAATGTGCTTATC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               CBX5_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               CBX5_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               267-426, - strand, RNAz p=0.993962

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               267-426, - strand, RNAz p=0.993962

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-107, gnl|bosTau2|chr5 (16537552-16537653)
               

               
               1-107, gnl|Hg17|chr12 (52960164-52960058)
               

               
               1-107, gnl|Mm7|chr15 (103228880-103228774)
               


               
               190-710, gnl|bosTau2|chr14 (21286596-21286089)
               

               
               190-710, gnl|Hg17|chrX (62302528-62302021)
               

               
               190-710, gnl|Mm7|chr11 (96909891-96915795)
               


               
               410-689, gnl|bosTau2|chr13 (9454725-9454447)
               

               
               410-689, gnl|Hg17|chr6 (116881157-116880881)
               

               
               410-689, gnl|Mm7|chr14 (68637006-68636729)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-107, gnl|bosTau2|chr5 (16537552-16537653)
               

               
               1-107, gnl|Hg17|chr12 (52960164-52960058)
               

               
               1-107, gnl|Mm7|chr15 (103228880-103228774)
               


               
               190-710, gnl|bosTau2|chr14 (21286596-21286089)
               

               
               190-710, gnl|Hg17|chrX (62302528-62302021)
               

               
               190-710, gnl|Mm7|chr11 (96909891-96915795)
               


               
               410-689, gnl|bosTau2|chr13 (9454725-9454447)
               

               
               410-689, gnl|Hg17|chr6 (116881157-116880881)
               

               
               410-689, gnl|Mm7|chr14 (68637006-68636729)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               nca (0.136874)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               nca (0.136874)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	1-107, gnl\|bosTau2\|chr5 (16537552-16537653)
	1-107, gnl\|Hg17\|chr12 (52960164-52960058)
	1-107, gnl\|Mm7\|chr15 (103228880-103228774)

	190-710, gnl\|bosTau2\|chr14 (21286596-21286089)
	190-710, gnl\|Hg17\|chrX (62302528-62302021)
	190-710, gnl\|Mm7\|chr11 (96909891-96915795)

	410-689, gnl\|bosTau2\|chr13 (9454725-9454447)
	410-689, gnl\|Hg17\|chr6 (116881157-116880881)
	410-689, gnl\|Mm7\|chr14 (68637006-68636729)

	tes (0.207814)
	nlu (0.191681)
	fty (0.17584)
	ton (0.1755)
	fhi (0.169578)
	eli (0.151814)
	nca (0.136874)
	cly (0.120642)
	eru (0.120048)
	eje (0.0988338)
	ldo (0.0970026)