Non-Coding RNA Search

Ss1.1-LyN1-MLN01E030095.5

Sequence:


               
               AGCGCAGTCGGCTTGAGCGCTCACGGTAGCGAGGAGGTTTCCTCAGCCGGCCGTCCCGCC
TTCCGCCGCCGCCGTCGCCGGGCTGCGCCGCTCCAGCCCAGACGCACCTCCGTACTCCTC
GCTGCTTCCCTTGTCGTCGGCACACACCATGACGAAGAAAGAGAAGAAATCCTTCAACCA
GAGCATGGCCGAATGGAAGCTGTTCTTGTACAACCCGACCACCGGAGAGTTCCTGGGGCG
CTCCGCCAAGAGCTGGGGTTTGATCTTGCTCTTCTACCTAGTCTTTTATGTGTTCCTGGC
TGCACTCTTTGCATTCACAATGTGGGTTATGCTTCAGACCCTGAACGATGAGGTTCCAAA
ATATCGTGACCAGATTTCTAGTCCAGGACTTATGGTTTTTCCAAAACCAGTGTCAGCGTT
GGATTATTCATTCAGTGTGTCTGATCCAGACTCCTATAAAGGGTACATTGATGACCTTAA
GAAATTTCTAAAGCCATATGACTTAGAAGAACAGAAGAATCTCACAGATTGTACCGATGG
AAAATTTCTTGAACAGAAGGGTCCACATTATGATGCATGTCGGTTTCCTCTTAACTTACT
TGAAGCATGCAGTGGTGAGATTGATCCCCAGTTTGGCTACTCCAGAGGAAACCCTTGTAT
TCTTGTGAAAATGAACAGAATAATTGGATTAAAGCCTCAAGGAGAACCAAGGATAGAATG
TATTTCGAAGGGTGAAAGCACAGCAGTTCTATCAACTTATCCTCCCAATGGAAAGATAGA
CATAAAGTATTTTCCATATTATGGAAAAAAACTGCATGGGAACTATCTACAGCCATTAGT
TGCTGTCCAGCTCACCTTTGATGCTGGCAATGACATGAACGAAGTAACAGTTGAGTGCAA
GATTGATGGATCACCCAACCTAAAAAACCAGGATGACCGTGACAAGTTTTTAGGACGAGT
TGCATTCAAAGTCACCGTGCATGCATAGTAGGAGTTAGGATATCTCCACAGAGTAAATGC
TGTGTTGTCTGTCTTCATTCTGTATCAGCTGGACCTGCCATTCCAGAATTATGAGACCAC
CTTGGAGAAAGGTGGAGTGGTACATGACACTGGGGTAACATCGCAATGTGCTTCCAGATC
ATAGTGTTCAGTGTCCTCCGAAGTAACTGCCTGTTGCCTCTGCTGCCTTTTGAACCATGT
ACAGTCACCAGATGGGGACTGTGAACACCTGATTCTGAACATGTAGAATGGGGGTCTTAA
TCCAATTTTTATGTGGTTTAATTGCCAAGTGTCTAAAGCTTCATGTGCTGTGCCATGTAA
ATATTTTATAGATTTAACACTGGTTAACTGTCATATTTTGATGCCAGCAAAGTTTTAGGG
GATAAAATGGTACCTGACCAACATCAAATGACTTTATAGCTGCAAGAAAAGCAGTGTGTG
GAGTTCTGTGTGTGAGGAGGAAAAAGGAAAATAAAAGTGGATTTGAAAGGTTGTCTTGGA
TTTTTTTTTTAAATTATTTTTTACATGTTGCATTAGTCTGGATCTTTTTGACTAAGAGCA
CAAACTTTTTGTTGTAAAACATTTAAAATGTTAAAACCAAAAAAAAAAAGTGATGGGATT
ATTTTTAGGGCGGGAACTAATAAATCTTTTAAAGTATTGCAATTAAAGTATTTTAGACCA
TAGATAGAAACAGCATTTTTAAGTTAGCTAATTGGAATATGCACCTAATTTTTTTATAAG
ATTAAAATCATAAGACTTGTATAATAATTTGAAATATCTTATTACCATTTTGTTTAGCAG
GCTGTAGACTCTAATAAAAGATATAGATTGTCAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGCAGTCGGCTTGAGCGCTCACGGTAGCGAGGAGGTTTCCTCAGCCGGCCGTCCCGCC
TTCCGCCGCCGCCGTCGCCGGGCTGCGCCGCTCCAGCCCAGACGCACCTCCGTACTCCTC
GCTGCTTCCCTTGTCGTCGGCACACACCATGACGAAGAAAGAGAAGAAATCCTTCAACCA
GAGCATGGCCGAATGGAAGCTGTTCTTGTACAACCCGACCACCGGAGAGTTCCTGGGGCG
CTCCGCCAAGAGCTGGGGTTTGATCTTGCTCTTCTACCTAGTCTTTTATGTGTTCCTGGC
TGCACTCTTTGCATTCACAATGTGGGTTATGCTTCAGACCCTGAACGATGAGGTTCCAAA
ATATCGTGACCAGATTTCTAGTCCAGGACTTATGGTTTTTCCAAAACCAGTGTCAGCGTT
GGATTATTCATTCAGTGTGTCTGATCCAGACTCCTATAAAGGGTACATTGATGACCTTAA
GAAATTTCTAAAGCCATATGACTTAGAAGAACAGAAGAATCTCACAGATTGTACCGATGG
AAAATTTCTTGAACAGAAGGGTCCACATTATGATGCATGTCGGTTTCCTCTTAACTTACT
TGAAGCATGCAGTGGTGAGATTGATCCCCAGTTTGGCTACTCCAGAGGAAACCCTTGTAT
TCTTGTGAAAATGAACAGAATAATTGGATTAAAGCCTCAAGGAGAACCAAGGATAGAATG
TATTTCGAAGGGTGAAAGCACAGCAGTTCTATCAACTTATCCTCCCAATGGAAAGATAGA
CATAAAGTATTTTCCATATTATGGAAAAAAACTGCATGGGAACTATCTACAGCCATTAGT
TGCTGTCCAGCTCACCTTTGATGCTGGCAATGACATGAACGAAGTAACAGTTGAGTGCAA
GATTGATGGATCACCCAACCTAAAAAACCAGGATGACCGTGACAAGTTTTTAGGACGAGT
TGCATTCAAAGTCACCGTGCATGCATAGTAGGAGTTAGGATATCTCCACAGAGTAAATGC
TGTGTTGTCTGTCTTCATTCTGTATCAGCTGGACCTGCCATTCCAGAATTATGAGACCAC
CTTGGAGAAAGGTGGAGTGGTACATGACACTGGGGTAACATCGCAATGTGCTTCCAGATC
ATAGTGTTCAGTGTCCTCCGAAGTAACTGCCTGTTGCCTCTGCTGCCTTTTGAACCATGT
ACAGTCACCAGATGGGGACTGTGAACACCTGATTCTGAACATGTAGAATGGGGGTCTTAA
TCCAATTTTTATGTGGTTTAATTGCCAAGTGTCTAAAGCTTCATGTGCTGTGCCATGTAA
ATATTTTATAGATTTAACACTGGTTAACTGTCATATTTTGATGCCAGCAAAGTTTTAGGG
GATAAAATGGTACCTGACCAACATCAAATGACTTTATAGCTGCAAGAAAAGCAGTGTGTG
GAGTTCTGTGTGTGAGGAGGAAAAAGGAAAATAAAAGTGGATTTGAAAGGTTGTCTTGGA
TTTTTTTTTTAAATTATTTTTTACATGTTGCATTAGTCTGGATCTTTTTGACTAAGAGCA
CAAACTTTTTGTTGTAAAACATTTAAAATGTTAAAACCAAAAAAAAAAAGTGATGGGATT
ATTTTTAGGGCGGGAACTAATAAATCTTTTAAAGTATTGCAATTAAAGTATTTTAGACCA
TAGATAGAAACAGCATTTTTAAGTTAGCTAATTGGAATATGCACCTAATTTTTTTATAAG
ATTAAAATCATAAGACTTGTATAATAATTTGAAATATCTTATTACCATTTTGTTTAGCAG
GCTGTAGACTCTAATAAAAGATATAGATTGTCAAAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|10644775|gb|AAG21398.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10644775|gb|AAG21398.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-1493, gnl|bosTau2|chr1 (31651006-31649516)
               

               
               2-1493, gnl|Hg17|chr2 (60874713-60873172)
               

               
               2-1493, gnl|Mm7|chr3 (78239992-78241552)
               


               
               473-801, gnl|bosTau2|chr11 (45077114-45077426)
               

               
               473-801, gnl|Hg17|chr14 (19446434-19446120)
               

               
               473-801, gnl|Mm7|chrX (19580317-19580635)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1493, gnl|bosTau2|chr1 (31651006-31649516)
               

               
               2-1493, gnl|Hg17|chr2 (60874713-60873172)
               

               
               2-1493, gnl|Mm7|chr3 (78239992-78241552)
               


               
               473-801, gnl|bosTau2|chr11 (45077114-45077426)
               

               
               473-801, gnl|Hg17|chr14 (19446434-19446120)
               

               
               473-801, gnl|Mm7|chrX (19580317-19580635)

Expressed library(ies): 45 entry(ies)

More info

Expressed library(ies): 45 entry(ies)

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               cte (0.87822)
               

               
               col (0.780031)
               

               
               lin (0.582411)
               

               
               nlu (0.575043)
               

               
               fbs (0.526039)
               

               
               pro (0.512033)
               

               
               spc (0.453463)
               

               
               ski (0.440205)
               

               
               eje (0.395335)
               

               
               aor (0.390549)
               

               
               ova (0.387397)
               

               
               vin (0.332557)
               

               
               nco (0.323468)
               

               
               fat (0.294855)
               

               
               spl (0.286369)
               

               
               hyp (0.285673)
               

               
               csk (0.281492)
               

               
               fce (0.271592)
               

               
               ret (0.257467)
               

               
               clu (0.239292)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               fli (0.202881)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 45 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.87822)
               

               
               col (0.780031)
               

               
               lin (0.582411)
               

               
               nlu (0.575043)
               

               
               fbs (0.526039)
               

               
               pro (0.512033)
               

               
               spc (0.453463)
               

               
               ski (0.440205)
               

               
               eje (0.395335)
               

               
               aor (0.390549)
               

               
               ova (0.387397)
               

               
               vin (0.332557)
               

               
               nco (0.323468)
               

               
               fat (0.294855)
               

               
               spl (0.286369)
               

               
               hyp (0.285673)
               

               
               csk (0.281492)
               

               
               fce (0.271592)
               

               
               ret (0.257467)
               

               
               clu (0.239292)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               fli (0.202881)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	2-1493, gnl\|bosTau2\|chr1 (31651006-31649516)
	2-1493, gnl\|Hg17\|chr2 (60874713-60873172)
	2-1493, gnl\|Mm7\|chr3 (78239992-78241552)

	473-801, gnl\|bosTau2\|chr11 (45077114-45077426)
	473-801, gnl\|Hg17\|chr14 (19446434-19446120)
	473-801, gnl\|Mm7\|chrX (19580317-19580635)

	cte (0.87822)
	col (0.780031)
	lin (0.582411)
	nlu (0.575043)
	fbs (0.526039)
	pro (0.512033)
	spc (0.453463)
	ski (0.440205)
	eje (0.395335)
	aor (0.390549)
	ova (0.387397)
	vin (0.332557)
	nco (0.323468)
	fat (0.294855)
	spl (0.286369)
	hyp (0.285673)
	csk (0.281492)
	fce (0.271592)
	ret (0.257467)
	clu (0.239292)
	cbe (0.239234)
	ece (0.229305)
	fli (0.202881)
	nep (0.183925)
	sag (0.182715)
	sin (0.174948)
	rec (0.17307)
	eye (0.170503)
	cje (0.165235)
	mga (0.160205)
	fco (0.157208)
	tbr (0.154178)
	lun (0.150489)
	pty (0.142714)
	lnt (0.142308)
	lyg (0.133103)
	ute (0.132784)
	sug (0.127291)
	thg (0.126791)
	ese (0.126502)
	eep (0.122564)
	cly (0.120642)
	pgl (0.118483)
	ecc (0.115035)
	nbm (0.0993246)