Ss1.1-LyN1-MLN01E040056.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCCTTGTCGATGTTAACTCGGCCGCACCAGTCGGCCTTGGGGGCGGGGCTGTAGGGGAA AGTGCCAAAGCTGCTGAGTGAAGTGAGAATTCTACTGGAGAGGAAATGGCTGCCTCATCA TCATCCTCCTCAGCTGGTGGGGTCAGCGGAAGTTCTGTCACTGGATCTGGTTTCAGTGTC TCAGACCTTGCCCCACCACGGAAAGCCCTTTTCACCTACCCCAAAGGAGCTGGAGAGATG TTAGAAGATGGCTCTGAGAGATTCCTCTGTGAATCCGTTTTCAGTTATCAGGTGGCATCG ACGCTTAAACAGGTGAAACATGATCAGCAAGTTGCTCGGATGGAAAAACTAGCTAGTTTG GTAGAAGAGCTGGAGGCAGATGAGTGGCGGTTTAAACCCATCGAGCAGCTTTTGGGCTTC ACACCCTCTTCAGGTTGACCTTGCCTGGATGTTCACCTCTGGTGCACAAGTACAGGTCCA GCGAGAAACTTTTGTTACAGATTACATAGCCATCCAGAGACTCACAGCTCCATCCCCGAA TTGTTATTTCACATGCGTACTTGGTTTCTCTGTATCTATCCACAAGCAACAAAAACTTAA ATGTGTGATCTTGCAGGGAGAATTTTTGTTTGTTTTAAAAAGTATTGAGAATCATATTTA GACAATCAGTGTCAGAGAACCAAGAGGTTTGGGTTTAAGAGAGATTTATAAAACTTCACA AGCCAGGACACATCCCCGAATTGGCCAACTGAATGGCATCCCTCCTGTCATTTTGTGCAG TTCCTAGAATCCTCCACCCCTCAAGTCCAAGGTCAAGAACTGGAGTTAGAAAATACAGCA TTTCTAAAAAAAAAGAAAAGAAAAGAAAAGAAAATACAGCATTTCTGACCTAAAACAGTT CTTTCTGCAAATGAATGTGGTTTCAACTCAGGACCTGTCCAAATTAGGAATTTTTAAATG TTGGGTTTTTTTTTCTATTTTTAAACATCTAATTCTATAGATTCTAACTTTTTCTAACCT CTTCTAGGCATGCCAGATGCTGGCAAAAAGAACTGCTTTTTAAATGTTGAAGCACTTGTA AAAATAAAGCAGTGAGCAAAATCCTTTTAAACATAGAAATCCTGAGTTCATCGTGTTGGT GGGCTCAGGCAATTCCGTAGCAAATAAATCCTTTGAAAGAGCTCCAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCCTTGTCGATGTTAACTCGGCCGCACCAGTCGGCCTTGGGGGCGGGGCTGTAGGGGAA AGTGCCAAAGCTGCTGAGTGAAGTGAGAATTCTACTGGAGAGGAAATGGCTGCCTCATCA TCATCCTCCTCAGCTGGTGGGGTCAGCGGAAGTTCTGTCACTGGATCTGGTTTCAGTGTC TCAGACCTTGCCCCACCACGGAAAGCCCTTTTCACCTACCCCAAAGGAGCTGGAGAGATG TTAGAAGATGGCTCTGAGAGATTCCTCTGTGAATCCGTTTTCAGTTATCAGGTGGCATCG ACGCTTAAACAGGTGAAACATGATCAGCAAGTTGCTCGGATGGAAAAACTAGCTAGTTTG GTAGAAGAGCTGGAGGCAGATGAGTGGCGGTTTAAACCCATCGAGCAGCTTTTGGGCTTC ACACCCTCTTCAGGTTGACCTTGCCTGGATGTTCACCTCTGGTGCACAAGTACAGGTCCA GCGAGAAACTTTTGTTACAGATTACATAGCCATCCAGAGACTCACAGCTCCATCCCCGAA TTGTTATTTCACATGCGTACTTGGTTTCTCTGTATCTATCCACAAGCAACAAAAACTTAA ATGTGTGATCTTGCAGGGAGAATTTTTGTTTGTTTTAAAAAGTATTGAGAATCATATTTA GACAATCAGTGTCAGAGAACCAAGAGGTTTGGGTTTAAGAGAGATTTATAAAACTTCACA AGCCAGGACACATCCCCGAATTGGCCAACTGAATGGCATCCCTCCTGTCATTTTGTGCAG TTCCTAGAATCCTCCACCCCTCAAGTCCAAGGTCAAGAACTGGAGTTAGAAAATACAGCA TTTCTAAAAAAAAAGAAAAGAAAAGAAAAGAAAATACAGCATTTCTGACCTAAAACAGTT CTTTCTGCAAATGAATGTGGTTTCAACTCAGGACCTGTCCAAATTAGGAATTTTTAAATG TTGGGTTTTTTTTTCTATTTTTAAACATCTAATTCTATAGATTCTAACTTTTTCTAACCT CTTCTAGGCATGCCAGATGCTGGCAAAAAGAACTGCTTTTTAAATGTTGAAGCACTTGTA AAAATAAAGCAGTGAGCAAAATCCTTTTAAACATAGAAATCCTGAGTTCATCGTGTTGGT GGGCTCAGGCAATTCCGTAGCAAATAAATCCTTTGAAAGAGCTCCAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 113-232, - strand, RNAz p=0.980459 | |
| 116-235, - strand, RNAz p=0.948749 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 113-232, - strand, RNAz p=0.980459 | |
| 116-235, - strand, RNAz p=0.948749 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 77-250, gnl|bosTau2|chr28 (20813591-20813418) | |
| 77-250, gnl|canFam2|chr4 (26092246-26092359) | |
| 77-250, gnl|danRer3|chr23 (19786190-19786105) | |
| 77-250, gnl|dasNov1|scaffold_113397 (3206-3319) | |
| 77-250, gnl|echTel1|scaffold_85959 (3015-2902) | |
| 77-250, gnl|fr1|chrUn (20234167-20234082) | |
| 77-250, gnl|galGal2|chr6 (10740452-10740347) | |
| 77-250, gnl|hg17|chr10 (73653651-73653764) | |
| 77-250, gnl|Hg17|chr10 (73653650-73653823) | |
| 77-250, gnl|loxAfr1|scaffold_36872 (24725-24612) | |
| 77-250, gnl|mm7|chr10 (59514812-59514701) | |
| 77-250, gnl|Mm7|chr10 (59514811-59514640) | |
| 77-250, gnl|monDom2|scaffold_14 (219656-219758) | |
| 77-250, gnl|oryCun1|scaffold_205999 (42912-42799) | |
| 77-250, gnl|rheMac2|chr9 (64774400-64774287) | |
| 77-250, gnl|rn3|chr20 (27310044-27309933) | |
| 77-250, gnl|tetNig1|chr2_random (1228812-1228897) | |
| 77-250, gnl|xenTro1|scaffold_171 (550705-550806) | |
| 322-837, gnl|bosTau2|chr28 (20807012-20806492) | |
| 322-837, gnl|Hg17|chr10 (73662764-73663288) | |
| 322-837, gnl|Mm7|chr10 (59507034-59506409) | |
| 880-1188, gnl|bosTau2|chr28 (20806493-20806187) | |
| 880-1188, gnl|Hg17|chr10 (73663287-73663593) | |
| 880-1188, gnl|Mm7|chr10 (59506408-59506101) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 77-250, gnl|bosTau2|chr28 (20813591-20813418) | |
| 77-250, gnl|canFam2|chr4 (26092246-26092359) | |
| 77-250, gnl|danRer3|chr23 (19786190-19786105) | |
| 77-250, gnl|dasNov1|scaffold_113397 (3206-3319) | |
| 77-250, gnl|echTel1|scaffold_85959 (3015-2902) | |
| 77-250, gnl|fr1|chrUn (20234167-20234082) | |
| 77-250, gnl|galGal2|chr6 (10740452-10740347) | |
| 77-250, gnl|hg17|chr10 (73653651-73653764) | |
| 77-250, gnl|Hg17|chr10 (73653650-73653823) | |
| 77-250, gnl|loxAfr1|scaffold_36872 (24725-24612) | |
| 77-250, gnl|mm7|chr10 (59514812-59514701) | |
| 77-250, gnl|Mm7|chr10 (59514811-59514640) | |
| 77-250, gnl|monDom2|scaffold_14 (219656-219758) | |
| 77-250, gnl|oryCun1|scaffold_205999 (42912-42799) | |
| 77-250, gnl|rheMac2|chr9 (64774400-64774287) | |
| 77-250, gnl|rn3|chr20 (27310044-27309933) | |
| 77-250, gnl|tetNig1|chr2_random (1228812-1228897) | |
| 77-250, gnl|xenTro1|scaffold_171 (550705-550806) | |
| 322-837, gnl|bosTau2|chr28 (20807012-20806492) | |
| 322-837, gnl|Hg17|chr10 (73662764-73663288) | |
| 322-837, gnl|Mm7|chr10 (59507034-59506409) | |
| 880-1188, gnl|bosTau2|chr28 (20806493-20806187) | |
| 880-1188, gnl|Hg17|chr10 (73663287-73663593) | |
| 880-1188, gnl|Mm7|chr10 (59506408-59506101) |
| Expressed library(ies): 42 entry(ies) | More info |
| Expressed library(ies): 42 entry(ies) | Help | Less info |
| fce (0.543183) | |
| gul (0.532765) | |
| pro (0.512033) | |
| amn (0.417711) | |
| che (0.408942) | |
| ssp (0.406559) | |
| col (0.390016) | |
| bla (0.373042) | |
| tra (0.369276) | |
| sag (0.36543) | |
| fty (0.351679) | |
| ill (0.351185) | |
| lun (0.300978) | |
| ldo (0.291008) | |
| spl (0.286369) | |
| nca (0.273748) | |
| ova (0.258264) | |
| cbr (0.255951) | |
| med (0.232504) | |
| mgp (0.230681) | |
| nms (0.213858) | |
| cty (0.20816) | |
| fli (0.202881) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cut (0.169924) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| cag (0.151194) | |
| fat (0.147427) | |
| ski (0.146735) | |
| liv (0.146284) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| pla (0.133672) | |
| kid (0.129735) | |
| sug (0.127291) | |
| thg (0.126791) | |
| pgl (0.118483) | |
| cbl (0.114797) | |
| eje (0.0988338) |
| Expressed library(ies): 42 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.543183) | |
| gul (0.532765) | |
| pro (0.512033) | |
| amn (0.417711) | |
| che (0.408942) | |
| ssp (0.406559) | |
| col (0.390016) | |
| bla (0.373042) | |
| tra (0.369276) | |
| sag (0.36543) | |
| fty (0.351679) | |
| ill (0.351185) | |
| lun (0.300978) | |
| ldo (0.291008) | |
| spl (0.286369) | |
| nca (0.273748) | |
| ova (0.258264) | |
| cbr (0.255951) | |
| med (0.232504) | |
| mgp (0.230681) | |
| nms (0.213858) | |
| cty (0.20816) | |
| fli (0.202881) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cut (0.169924) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| cag (0.151194) | |
| fat (0.147427) | |
| ski (0.146735) | |
| liv (0.146284) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| pla (0.133672) | |
| kid (0.129735) | |
| sug (0.127291) | |
| thg (0.126791) | |
| pgl (0.118483) | |
| cbl (0.114797) | |
| eje (0.0988338) |