Ss1.1-LyN1-MLN01E040080.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGAAGGTCGCGCGGCCTGCGTCGCGCGGAGCTTCGCTCGGCGGTGCTGTCTCACCGGTG AGGCCGAGAAGTCGGCCAGTCCCGCGCTCTGTCGAACCTGCAGGCCCGGGCCTCCTGTCA CTATGGAGTATCTCATTGGCATCCAGGGTCCCGACTATGTCCTTGTCGCTTCCGACCAGG TGGCAGCTAGCAATATTGTCCAGATGAAGGACGATCATGACAAGATGTTTAAGATGAGTG AAAAAATCTTACTTCTGTGTGTTGGAGAGGCTGGAGACACTGTACAGTTTGCAGAATATA TTCAGAAAAATGTGCAGCTTTATAAGATGCGAAATGGTTATGAATTGTCTCCCACAGCAG CAGCTAATTTCACTCGTCGAAACCTGGCTGACTGTCTTCGGAGTCGGACCCCATATCACG TCAACCTCCTCCTGGCTGGCTATGATGAGCACGAGGGTCCCGCACTCTACTATATGGACT ACCTGGCAGCCTTGGCTAAAGCCCCTTTCGCAGCCCACGGCTATGGTGCCTTCCTGACTC TCAGTATCCTGGACCGATACTACACACCAACTATCTCACGTGAGAAGGCAGTGGAGCTTC TTAGGAAATGTCTGGAGGAGCTCCAGAAACGCTTCATCCTGAATCTGCCAACCTTCAGTG TTCGAATCATTGACAAAAATGGCATCCATGATCTGGACAACATTTCCTTTCCTAAACAGG GCTCCTAACATCATGCCCTCTCTCCCATTTGCTAGGGAACTTTTTTTGATGGGCTCCTTT ATTTTTTTCTACTCTTTTGACGTGTGCTCTTGATAAATGGTTAATTCAGAATAAAGCTGA ATATGAATAAACTGAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGAAGGTCGCGCGGCCTGCGTCGCGCGGAGCTTCGCTCGGCGGTGCTGTCTCACCGGTG AGGCCGAGAAGTCGGCCAGTCCCGCGCTCTGTCGAACCTGCAGGCCCGGGCCTCCTGTCA CTATGGAGTATCTCATTGGCATCCAGGGTCCCGACTATGTCCTTGTCGCTTCCGACCAGG TGGCAGCTAGCAATATTGTCCAGATGAAGGACGATCATGACAAGATGTTTAAGATGAGTG AAAAAATCTTACTTCTGTGTGTTGGAGAGGCTGGAGACACTGTACAGTTTGCAGAATATA TTCAGAAAAATGTGCAGCTTTATAAGATGCGAAATGGTTATGAATTGTCTCCCACAGCAG CAGCTAATTTCACTCGTCGAAACCTGGCTGACTGTCTTCGGAGTCGGACCCCATATCACG TCAACCTCCTCCTGGCTGGCTATGATGAGCACGAGGGTCCCGCACTCTACTATATGGACT ACCTGGCAGCCTTGGCTAAAGCCCCTTTCGCAGCCCACGGCTATGGTGCCTTCCTGACTC TCAGTATCCTGGACCGATACTACACACCAACTATCTCACGTGAGAAGGCAGTGGAGCTTC TTAGGAAATGTCTGGAGGAGCTCCAGAAACGCTTCATCCTGAATCTGCCAACCTTCAGTG TTCGAATCATTGACAAAAATGGCATCCATGATCTGGACAACATTTCCTTTCCTAAACAGG GCTCCTAACATCATGCCCTCTCTCCCATTTGCTAGGGAACTTTTTTTGATGGGCTCCTTT ATTTTTTTCTACTCTTTTGACGTGTGCTCTTGATAAATGGTTAATTCAGAATAAAGCTGA ATATGAATAAACTGAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 1-211, gnl|bosTau2|chr3 (77213714-77213924) | |
| 1-211, gnl|Hg17|chr1 (35776246-35776038) | |
| 1-211, gnl|Mm7|chr4 (126122281-126122490) | |
| 213-338, gnl|bosTau2|chr3 (77218362-77218487) | |
| 213-338, gnl|Hg17|chr1 (35771127-35771002) | |
| 213-338, gnl|Mm7|chr4 (126128768-126128893) | |
| 407-573, gnl|bosTau2|chr3 (77277452-77277618) | |
| 407-573, gnl|canFam2|chr15 (9550557-9550427) | |
| 407-573, gnl|danRer3|chr19 (62166381-62166495) | |
| 407-573, gnl|dasNov1|scaffold_1267 (45719-45589) | |
| 407-573, gnl|echTel1|scaffold_139232 (880-769) | |
| 407-573, gnl|fr1|chrUn (85981881-85981756) | |
| 407-573, gnl|galGal2|chr23 (3792758-3792640) | |
| 407-573, gnl|hg17|chr1 (35743923-35744053) | |
| 407-573, gnl|Hg17|chr1 (35744103-35743937) | |
| 407-573, gnl|loxAfr1|scaffold_3396 (94031-94161) | |
| 407-573, gnl|mm7|chr4 (126150886-126150756) | |
| 407-573, gnl|Mm7|chr4 (126150704-126150870) | |
| 407-573, gnl|monDom2|scaffold_43 (14836943-14836813) | |
| 407-573, gnl|oryCun1|scaffold_182637 (8144-8274) | |
| 407-573, gnl|panTro1|chr1 (36516343-36516473) | |
| 407-573, gnl|rheMac2|chr1 (38427489-38427619) | |
| 407-573, gnl|rn3|chr5 (146129573-146129443) | |
| 407-573, gnl|tetNig1|chrUn_random (155977375-155977266) | |
| 407-573, gnl|xenTro1|scaffold_977 (163974-163855) | |
| 619-855, gnl|bosTau2|chr3 (77280977-77281213) | |
| 619-855, gnl|Hg17|chr1 (35738070-35737832) | |
| 619-855, gnl|Mm7|chr4 (126154124-126154361) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-211, gnl|bosTau2|chr3 (77213714-77213924) | |
| 1-211, gnl|Hg17|chr1 (35776246-35776038) | |
| 1-211, gnl|Mm7|chr4 (126122281-126122490) | |
| 213-338, gnl|bosTau2|chr3 (77218362-77218487) | |
| 213-338, gnl|Hg17|chr1 (35771127-35771002) | |
| 213-338, gnl|Mm7|chr4 (126128768-126128893) | |
| 407-573, gnl|bosTau2|chr3 (77277452-77277618) | |
| 407-573, gnl|canFam2|chr15 (9550557-9550427) | |
| 407-573, gnl|danRer3|chr19 (62166381-62166495) | |
| 407-573, gnl|dasNov1|scaffold_1267 (45719-45589) | |
| 407-573, gnl|echTel1|scaffold_139232 (880-769) | |
| 407-573, gnl|fr1|chrUn (85981881-85981756) | |
| 407-573, gnl|galGal2|chr23 (3792758-3792640) | |
| 407-573, gnl|hg17|chr1 (35743923-35744053) | |
| 407-573, gnl|Hg17|chr1 (35744103-35743937) | |
| 407-573, gnl|loxAfr1|scaffold_3396 (94031-94161) | |
| 407-573, gnl|mm7|chr4 (126150886-126150756) | |
| 407-573, gnl|Mm7|chr4 (126150704-126150870) | |
| 407-573, gnl|monDom2|scaffold_43 (14836943-14836813) | |
| 407-573, gnl|oryCun1|scaffold_182637 (8144-8274) | |
| 407-573, gnl|panTro1|chr1 (36516343-36516473) | |
| 407-573, gnl|rheMac2|chr1 (38427489-38427619) | |
| 407-573, gnl|rn3|chr5 (146129573-146129443) | |
| 407-573, gnl|tetNig1|chrUn_random (155977375-155977266) | |
| 407-573, gnl|xenTro1|scaffold_977 (163974-163855) | |
| 619-855, gnl|bosTau2|chr3 (77280977-77281213) | |
| 619-855, gnl|Hg17|chr1 (35738070-35737832) | |
| 619-855, gnl|Mm7|chr4 (126154124-126154361) |
| Expressed library(ies): 40 entry(ies) | More info |
| Expressed library(ies): 40 entry(ies) | Help | Less info |
| hlv (0.696282) | |
| bla (0.621736) | |
| jej (0.593531) | |
| nlu (0.575043) | |
| tes (0.415628) | |
| fli (0.405762) | |
| elu (0.385356) | |
| ill (0.351185) | |
| sin (0.349895) | |
| spc (0.340097) | |
| eli (0.303628) | |
| ssp (0.271039) | |
| ste (0.270416) | |
| pla (0.267344) | |
| cov (0.264306) | |
| sug (0.254582) | |
| cly (0.241284) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| fcc (0.197785) | |
| col (0.195008) | |
| ton (0.1755) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| nco (0.161734) | |
| cli (0.152812) | |
| cag (0.151194) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| lin (0.145603) | |
| ova (0.129132) | |
| ese (0.126502) | |
| tra (0.123092) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 40 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (0.696282) | |
| bla (0.621736) | |
| jej (0.593531) | |
| nlu (0.575043) | |
| tes (0.415628) | |
| fli (0.405762) | |
| elu (0.385356) | |
| ill (0.351185) | |
| sin (0.349895) | |
| spc (0.340097) | |
| eli (0.303628) | |
| ssp (0.271039) | |
| ste (0.270416) | |
| pla (0.267344) | |
| cov (0.264306) | |
| sug (0.254582) | |
| cly (0.241284) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| fcc (0.197785) | |
| col (0.195008) | |
| ton (0.1755) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| nco (0.161734) | |
| cli (0.152812) | |
| cag (0.151194) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| lin (0.145603) | |
| ova (0.129132) | |
| ese (0.126502) | |
| tra (0.123092) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| nbm (0.0993246) | |
| eje (0.0988338) |