Ss1.1-LyN1-MLN01E040084.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTTAGCCCTCCCTCGAGATCACGGAAGTATCTAGCCGTGTCCCACACAACTTTTTCTG TTTTGTTTTGCTCTGTGAGTATACTTTCTGCTATCACCAGCAGGACAGGAAAGACGAATG GGTTTTTGTTTTAAACCGAGAGCAATTTTGTGATAGTTGGCGTTCTTTTATTTTCCTTCC AGAACAAAGAGTTGGAGTTTCAATTGTTTTTCAAGACAAACACTACCTTTGGTATTGGTT TTGAGAAATAATTTGTCAGAATATCTACTCTATGCCAACAAGAGCACACTATGGCCAAGC GAGTTGCAGTGATTGGAGCTGGTGTGAGTGGCCTGTCTTCCATCAAATGCTGCTTAGATG AGGACCTGGAGCCAACCTGCTTTGAAAGAAGTAATGACTTCGGGGGACTGTGGAAGTTTA CTGAAACTTCTGAAGATGGGATGACCAGGGTCTACAAGTCATTAGTGACAAATGTCTGCA AAGAAATGTCATGTTACAGTGACTTCCCCTTCCAAGAAGATTATCCCAATTTCATGAACC AAGAAAAATTTTGGAACTACCTCCAAGAATTTGCTGAGCACTTTGACCTTCTGAAATACA TTCAGTTTAGGACCACAGTGTGCAGTGTAACAAAGTGTCCTGACTTCTCCAAGACTGGTC AGTGGGATGTCGTCACAGAGACAGAGGGGAAGCAGTACAGAGCTGTCTTTGATGCTGTCA TGGTTTGCACTGGACGCTTCCTGAATCCCCATTTACCTTTAGAATCATTTCCCGGAATCT ATAGGTTTAAAGGGCAGATCCTGCACAGTCAACAGTACAAGAGCCCAGAACGCTTTCAGG GCAAACGCATCTTAGTGATTGGTCTTGGAAACACTGGAGGAGACATTGCAGTGGAGCTCA GTCGAACAGCAGCTCAGGTACTTCTCAGTACTAGAACTGGTACCTGGGTTGTCAACCGCT CTTCAGATGGGGGCTACCCATTTAATATGATGATTACAAGAAGACACCATAATTTTGTTG CACAAGTTCTGCCTTCATGTGTACTAAAATGGATTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTTAGCCCTCCCTCGAGATCACGGAAGTATCTAGCCGTGTCCCACACAACTTTTTCTG TTTTGTTTTGCTCTGTGAGTATACTTTCTGCTATCACCAGCAGGACAGGAAAGACGAATG GGTTTTTGTTTTAAACCGAGAGCAATTTTGTGATAGTTGGCGTTCTTTTATTTTCCTTCC AGAACAAAGAGTTGGAGTTTCAATTGTTTTTCAAGACAAACACTACCTTTGGTATTGGTT TTGAGAAATAATTTGTCAGAATATCTACTCTATGCCAACAAGAGCACACTATGGCCAAGC GAGTTGCAGTGATTGGAGCTGGTGTGAGTGGCCTGTCTTCCATCAAATGCTGCTTAGATG AGGACCTGGAGCCAACCTGCTTTGAAAGAAGTAATGACTTCGGGGGACTGTGGAAGTTTA CTGAAACTTCTGAAGATGGGATGACCAGGGTCTACAAGTCATTAGTGACAAATGTCTGCA AAGAAATGTCATGTTACAGTGACTTCCCCTTCCAAGAAGATTATCCCAATTTCATGAACC AAGAAAAATTTTGGAACTACCTCCAAGAATTTGCTGAGCACTTTGACCTTCTGAAATACA TTCAGTTTAGGACCACAGTGTGCAGTGTAACAAAGTGTCCTGACTTCTCCAAGACTGGTC AGTGGGATGTCGTCACAGAGACAGAGGGGAAGCAGTACAGAGCTGTCTTTGATGCTGTCA TGGTTTGCACTGGACGCTTCCTGAATCCCCATTTACCTTTAGAATCATTTCCCGGAATCT ATAGGTTTAAAGGGCAGATCCTGCACAGTCAACAGTACAAGAGCCCAGAACGCTTTCAGG GCAAACGCATCTTAGTGATTGGTCTTGGAAACACTGGAGGAGACATTGCAGTGGAGCTCA GTCGAACAGCAGCTCAGGTACTTCTCAGTACTAGAACTGGTACCTGGGTTGTCAACCGCT CTTCAGATGGGGGCTACCCATTTAATATGATGATTACAAGAAGACACCATAATTTTGTTG CACAAGTTCTGCCTTCATGTGTACTAAAATGGATTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 407-563, + strand, RNAz p=0.972885 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 407-563, + strand, RNAz p=0.972885 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 3-282, gnl|bosTau2|chr16 (27109158-27109441) | |
| 3-282, gnl|canFam2|chr7 (30563775-30563303) | |
| 3-282, gnl|echTel1|scaffold_278520 (42010-41550) | |
| 3-282, gnl|hg17|chr1 (168014808-168015242) | |
| 3-282, gnl|Hg17|chr1 (168014936-168015210) | |
| 3-282, gnl|loxAfr1|scaffold_10646 (56591-57040) | |
| 3-282, gnl|Mm7|chr1 (162775174-162774928) | |
| 3-282, gnl|monDom2|scaffold_16 (22506770-22507209) | |
| 3-282, gnl|oryCun1|scaffold_201801 (48037-48471) | |
| 3-282, gnl|panTro1|chr1_random (31550964-31550527) | |
| 3-282, gnl|rheMac2|chr1 (201034585-201035035) | |
| 3-282, gnl|rn3|chr13 (78508824-78508418) | |
| 407-609, gnl|bosTau2|chr16 (27119254-27119457) | |
| 407-609, gnl|Hg17|chr1 (168023783-168023987) | |
| 407-609, gnl|Mm7|chr1 (162769688-162769490) | |
| 916-1056, gnl|bosTau2|chr16 (27134885-27135025) | |
| 916-1056, gnl|canFam2|chr7 (30544489-30544301) | |
| 916-1056, gnl|dasNov1|scaffold_34786 (5686-5878) | |
| 916-1056, gnl|echTel1|scaffold_278520 (16436-16246) | |
| 916-1056, gnl|fr1|chrUn (237257693-237257503) | |
| 916-1056, gnl|hg17|chr1 (168033495-168033688) | |
| 916-1056, gnl|Hg17|chr1 (168033504-168033644) | |
| 916-1056, gnl|loxAfr1|scaffold_38134 (8440-8633) | |
| 916-1056, gnl|mm7|chr1 (162765008-162764819) | |
| 916-1056, gnl|Mm7|chr1 (162764998-162764861) | |
| 916-1056, gnl|monDom2|scaffold_16 (22517166-22517359) | |
| 916-1056, gnl|oryCun1|scaffold_201801 (66189-66381) | |
| 916-1056, gnl|panTro1|chr1_random (31532326-31532133) | |
| 916-1056, gnl|rheMac2|chr1 (201053434-201053626) | |
| 916-1056, gnl|rn3|chr13 (78498354-78498165) | |
| 916-1056, gnl|xenTro1|scaffold_74 (1066941-1066738) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-282, gnl|bosTau2|chr16 (27109158-27109441) | |
| 3-282, gnl|canFam2|chr7 (30563775-30563303) | |
| 3-282, gnl|echTel1|scaffold_278520 (42010-41550) | |
| 3-282, gnl|hg17|chr1 (168014808-168015242) | |
| 3-282, gnl|Hg17|chr1 (168014936-168015210) | |
| 3-282, gnl|loxAfr1|scaffold_10646 (56591-57040) | |
| 3-282, gnl|Mm7|chr1 (162775174-162774928) | |
| 3-282, gnl|monDom2|scaffold_16 (22506770-22507209) | |
| 3-282, gnl|oryCun1|scaffold_201801 (48037-48471) | |
| 3-282, gnl|panTro1|chr1_random (31550964-31550527) | |
| 3-282, gnl|rheMac2|chr1 (201034585-201035035) | |
| 3-282, gnl|rn3|chr13 (78508824-78508418) | |
| 407-609, gnl|bosTau2|chr16 (27119254-27119457) | |
| 407-609, gnl|Hg17|chr1 (168023783-168023987) | |
| 407-609, gnl|Mm7|chr1 (162769688-162769490) | |
| 916-1056, gnl|bosTau2|chr16 (27134885-27135025) | |
| 916-1056, gnl|canFam2|chr7 (30544489-30544301) | |
| 916-1056, gnl|dasNov1|scaffold_34786 (5686-5878) | |
| 916-1056, gnl|echTel1|scaffold_278520 (16436-16246) | |
| 916-1056, gnl|fr1|chrUn (237257693-237257503) | |
| 916-1056, gnl|hg17|chr1 (168033495-168033688) | |
| 916-1056, gnl|Hg17|chr1 (168033504-168033644) | |
| 916-1056, gnl|loxAfr1|scaffold_38134 (8440-8633) | |
| 916-1056, gnl|mm7|chr1 (162765008-162764819) | |
| 916-1056, gnl|Mm7|chr1 (162764998-162764861) | |
| 916-1056, gnl|monDom2|scaffold_16 (22517166-22517359) | |
| 916-1056, gnl|oryCun1|scaffold_201801 (66189-66381) | |
| 916-1056, gnl|panTro1|chr1_random (31532326-31532133) | |
| 916-1056, gnl|rheMac2|chr1 (201053434-201053626) | |
| 916-1056, gnl|rn3|chr13 (78498354-78498165) | |
| 916-1056, gnl|xenTro1|scaffold_74 (1066941-1066738) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| tes (0.207814) | |
| hea (0.204499) | |
| sin (0.174948) | |
| fat (0.147427) | |
| lin (0.145603) | |
| spl (0.143184) | |
| pla (0.133672) | |
| cty (0.10408) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| hea (0.204499) | |
| sin (0.174948) | |
| fat (0.147427) | |
| lin (0.145603) | |
| spl (0.143184) | |
| pla (0.133672) | |
| cty (0.10408) |