Ss1.1-LyN1-MLN01E040099.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TAAATCGGCTCGGCGGTTTGCCGCATCACGGAAGATGGCGGCCGCGACGGTGAACGGGGT GGCTGGCGGCTCGAGCTCGGGGCCTGCAGCGGCCTCGGGCGCAGTCCTGCAGGCCGCAGC CGGTATGTACGAACAACTCAAGGGCGAGTGGAACCGTAAAAGCCCCAATCTTAGCAAATG CGGTGAAGAACTGGGCCGTCTCAAGCTGGTTCTGTTGGAGCTCAACTTCCTGCCAACCAC AGGGACCAAACTGACCAAACAGCAGCTCATTCTGGCCCGTGACATACTGGAGATCGGGGC CCAGTGGAGTATCTTACGCAAGGACATCCCCTCCTTCGAGCGGTACATGGCCCAGCTCAA ATGCTACTACTTCGATTACAAGGAGCAGCTCCCGGAGTCAGCCTATATGCACCAGCTCTT GGGGCTCAACCTCCTCTTCCTGCTGTCCCAGAACCGGGTGGCTGAGTTCCACACAGAGCT GGAGCGGCTGCCTGCCAAGGACATCCAGACCAATGTGTACATCAAGCATCCGGTGTCTCT GGAGCAATACCTGATGGAGGGCAGCTACAACAAGGTGTTCCTGGCCAAAGGCAACATCCC TGCTGAGAGCTATACCTTCTTCATTGACATCCTGCTTGACACTATCAGGGACGAGATTGC TGGCTGCATCGAGAAGGCCTATGAAAAAATCCTCTTCACCGAGGCCACTCGGATCCTCTT CTTCAACACACCCAAAAAGATGACGGACTACGCCAAGAAGCGAGGGTGGGTCCTGGGCCT CAACAACTACTACAGCTTTGCCAGCCAGCAGCAGAAGCCAGAAGATACCACCATCCCTTC TACGGAGCTGGCCAAACAGGTCATCGAGTACGCCCGGCAGCTGGAGATGATTGTCTGAGC CCGCCAGGCACCGGGGTGGGGCAGGGCTCGCGTTATTTAAAGCAGTTGCAGGGCAGGGTT TCCTCCAATAAAGGTGGATTGACATTTTCTCTCTTAGGCCCTTGTCTCCCCGAGTGGAAT GGTGGGGACATGGGTTCTTATCTCTGAAGAACTTGAAAGTTTGGGGGCCCTAGGAAGTCC GAGATAACCCTGGGTCAGCCTCTGTCCAGAGGCCATTGCCTAAGGTCTCAGAGATGCCCA GTGGCAGTGTGGCCTGGGGAAGAGCACAGGCCCCAGGTAGAGGGACTGTTGCAGCCAGCT GTGGACACAGAAAGGCCAGGCCAAGGCCCCAGAGTGTTTCAGCGAAGGGGATGGGCGTGG CAGTTTTTTAAAATGTTTGCAATGAATTAAACCAGTTTTTAAAAATGAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TAAATCGGCTCGGCGGTTTGCCGCATCACGGAAGATGGCGGCCGCGACGGTGAACGGGGT GGCTGGCGGCTCGAGCTCGGGGCCTGCAGCGGCCTCGGGCGCAGTCCTGCAGGCCGCAGC CGGTATGTACGAACAACTCAAGGGCGAGTGGAACCGTAAAAGCCCCAATCTTAGCAAATG CGGTGAAGAACTGGGCCGTCTCAAGCTGGTTCTGTTGGAGCTCAACTTCCTGCCAACCAC AGGGACCAAACTGACCAAACAGCAGCTCATTCTGGCCCGTGACATACTGGAGATCGGGGC CCAGTGGAGTATCTTACGCAAGGACATCCCCTCCTTCGAGCGGTACATGGCCCAGCTCAA ATGCTACTACTTCGATTACAAGGAGCAGCTCCCGGAGTCAGCCTATATGCACCAGCTCTT GGGGCTCAACCTCCTCTTCCTGCTGTCCCAGAACCGGGTGGCTGAGTTCCACACAGAGCT GGAGCGGCTGCCTGCCAAGGACATCCAGACCAATGTGTACATCAAGCATCCGGTGTCTCT GGAGCAATACCTGATGGAGGGCAGCTACAACAAGGTGTTCCTGGCCAAAGGCAACATCCC TGCTGAGAGCTATACCTTCTTCATTGACATCCTGCTTGACACTATCAGGGACGAGATTGC TGGCTGCATCGAGAAGGCCTATGAAAAAATCCTCTTCACCGAGGCCACTCGGATCCTCTT CTTCAACACACCCAAAAAGATGACGGACTACGCCAAGAAGCGAGGGTGGGTCCTGGGCCT CAACAACTACTACAGCTTTGCCAGCCAGCAGCAGAAGCCAGAAGATACCACCATCCCTTC TACGGAGCTGGCCAAACAGGTCATCGAGTACGCCCGGCAGCTGGAGATGATTGTCTGAGC CCGCCAGGCACCGGGGTGGGGCAGGGCTCGCGTTATTTAAAGCAGTTGCAGGGCAGGGTT TCCTCCAATAAAGGTGGATTGACATTTTCTCTCTTAGGCCCTTGTCTCCCCGAGTGGAAT GGTGGGGACATGGGTTCTTATCTCTGAAGAACTTGAAAGTTTGGGGGCCCTAGGAAGTCC GAGATAACCCTGGGTCAGCCTCTGTCCAGAGGCCATTGCCTAAGGTCTCAGAGATGCCCA GTGGCAGTGTGGCCTGGGGAAGAGCACAGGCCCCAGGTAGAGGGACTGTTGCAGCCAGCT GTGGACACAGAAAGGCCAGGCCAAGGCCCCAGAGTGTTTCAGCGAAGGGGATGGGCGTGG CAGTTTTTTAAAATGTTTGCAATGAATTAAACCAGTTTTTAAAAATGAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1140-1247, + strand, RNAz p=0.781259 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1140-1247, + strand, RNAz p=0.781259 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_002812, + |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 1-205, gnl|bosTau2|chr18 (41121156-41120952) | |
| 1-205, gnl|Hg17|chr19 (43557237-43557441) | |
| 1-205, gnl|Mm7|chr7 (26119722-26119512) | |
| 382-547, gnl|bosTau2|chr18 (41118237-41118072) | |
| 382-547, gnl|canFam2|chr1 (117533014-117533177) | |
| 382-547, gnl|canFam2|chr1 (117533173-117533015) | |
| 382-547, gnl|canFam2|chr1 (117533201-117533012) | |
| 382-547, gnl|danRer3|chr18 (47487082-47486922) | |
| 382-547, gnl|danRer3|chr18 (47316701-47316939) | |
| 382-547, gnl|danRer3|chr18 (47316669-47316865) | |
| 382-547, gnl|dasNov1|scaffold_29208 (12526-12690) | |
| 382-547, gnl|dasNov1|scaffold_29208 (12679-12529) | |
| 382-547, gnl|dasNov1|scaffold_29208 (12704-12524) | |
| 382-547, gnl|echTel1|scaffold_218583 (899-1061) | |
| 382-547, gnl|echTel1|scaffold_218583 (1057-898) | |
| 382-547, gnl|echTel1|scaffold_264399 (9895-10084) | |
| 382-547, gnl|fr1|chrUn (65951374-65951214) | |
| 382-547, gnl|fr1|chrUn (65951217-65951373) | |
| 382-547, gnl|fr1|chrUn (65951192-65951379) | |
| 382-547, gnl|hg17|chr1 (151200265-151200428) | |
| 382-547, gnl|hg17|chr18 (846526-846689) | |
| 382-547, gnl|hg17|chr19 (43561698-43561892) | |
| 382-547, gnl|Hg17|chr19 (43561720-43561885) | |
| 382-547, gnl|loxAfr1|scaffold_14252 (7250-7413) | |
| 382-547, gnl|loxAfr1|scaffold_14252 (7409-7250) | |
| 382-547, gnl|loxAfr1|scaffold_14252 (7437-7245) | |
| 382-547, gnl|mm7|chr7 (26116303-26116466) | |
| 382-547, gnl|mm7|chr7 (26116465-26116304) | |
| 382-547, gnl|mm7|chr7 (26116495-26116301) | |
| 382-547, gnl|Mm7|chr7 (26116466-26116301) | |
| 382-547, gnl|monDom2|scaffold_139 (488230-488067) | |
| 382-547, gnl|monDom2|scaffold_139 (488043-488231) | |
| 382-547, gnl|monDom2|scaffold_39 (18088071-18088231) | |
| 382-547, gnl|panTro1|chr1 (133187305-133187468) | |
| 382-547, gnl|panTro1|chr17 (11954057-11953894) | |
| 382-547, gnl|panTro1|chr17 (11954054-11953896) | |
| 382-547, gnl|rheMac2|chr1 (132954311-132954474) | |
| 382-547, gnl|rheMac2|chr1 (132954475-132954310) | |
| 382-547, gnl|rheMac2|chr18 (13247777-13247614) | |
| 382-547, gnl|rn3|chr1 (84389962-84389769) | |
| 382-547, gnl|rn3|chr3 (42597356-42597519) | |
| 382-547, gnl|rn3|chr3 (42597515-42597355) | |
| 382-547, gnl|tetNig1|chr16 (5122620-5122460) | |
| 382-547, gnl|tetNig1|chr16 (5122463-5122619) | |
| 382-547, gnl|tetNig1|chr16 (5122454-5122625) | |
| 382-547, gnl|xenTro1|scaffold_572 (450793-450630) | |
| 382-547, gnl|xenTro1|scaffold_572 (450633-450792) | |
| 382-547, gnl|xenTro1|scaffold_572 (450627-450794) | |
| 759-1308, gnl|bosTau2|chr18 (41115587-41115022) | |
| 759-1308, gnl|Hg17|chr19 (43565731-43566304) | |
| 759-1308, gnl|Mm7|chr7 (26113975-26113478) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-205, gnl|bosTau2|chr18 (41121156-41120952) | |
| 1-205, gnl|Hg17|chr19 (43557237-43557441) | |
| 1-205, gnl|Mm7|chr7 (26119722-26119512) | |
| 382-547, gnl|bosTau2|chr18 (41118237-41118072) | |
| 382-547, gnl|canFam2|chr1 (117533014-117533177) | |
| 382-547, gnl|canFam2|chr1 (117533173-117533015) | |
| 382-547, gnl|canFam2|chr1 (117533201-117533012) | |
| 382-547, gnl|danRer3|chr18 (47487082-47486922) | |
| 382-547, gnl|danRer3|chr18 (47316701-47316939) | |
| 382-547, gnl|danRer3|chr18 (47316669-47316865) | |
| 382-547, gnl|dasNov1|scaffold_29208 (12526-12690) | |
| 382-547, gnl|dasNov1|scaffold_29208 (12679-12529) | |
| 382-547, gnl|dasNov1|scaffold_29208 (12704-12524) | |
| 382-547, gnl|echTel1|scaffold_218583 (899-1061) | |
| 382-547, gnl|echTel1|scaffold_218583 (1057-898) | |
| 382-547, gnl|echTel1|scaffold_264399 (9895-10084) | |
| 382-547, gnl|fr1|chrUn (65951374-65951214) | |
| 382-547, gnl|fr1|chrUn (65951217-65951373) | |
| 382-547, gnl|fr1|chrUn (65951192-65951379) | |
| 382-547, gnl|hg17|chr1 (151200265-151200428) | |
| 382-547, gnl|hg17|chr18 (846526-846689) | |
| 382-547, gnl|hg17|chr19 (43561698-43561892) | |
| 382-547, gnl|Hg17|chr19 (43561720-43561885) | |
| 382-547, gnl|loxAfr1|scaffold_14252 (7250-7413) | |
| 382-547, gnl|loxAfr1|scaffold_14252 (7409-7250) | |
| 382-547, gnl|loxAfr1|scaffold_14252 (7437-7245) | |
| 382-547, gnl|mm7|chr7 (26116303-26116466) | |
| 382-547, gnl|mm7|chr7 (26116465-26116304) | |
| 382-547, gnl|mm7|chr7 (26116495-26116301) | |
| 382-547, gnl|Mm7|chr7 (26116466-26116301) | |
| 382-547, gnl|monDom2|scaffold_139 (488230-488067) | |
| 382-547, gnl|monDom2|scaffold_139 (488043-488231) | |
| 382-547, gnl|monDom2|scaffold_39 (18088071-18088231) | |
| 382-547, gnl|panTro1|chr1 (133187305-133187468) | |
| 382-547, gnl|panTro1|chr17 (11954057-11953894) | |
| 382-547, gnl|panTro1|chr17 (11954054-11953896) | |
| 382-547, gnl|rheMac2|chr1 (132954311-132954474) | |
| 382-547, gnl|rheMac2|chr1 (132954475-132954310) | |
| 382-547, gnl|rheMac2|chr18 (13247777-13247614) | |
| 382-547, gnl|rn3|chr1 (84389962-84389769) | |
| 382-547, gnl|rn3|chr3 (42597356-42597519) | |
| 382-547, gnl|rn3|chr3 (42597515-42597355) | |
| 382-547, gnl|tetNig1|chr16 (5122620-5122460) | |
| 382-547, gnl|tetNig1|chr16 (5122463-5122619) | |
| 382-547, gnl|tetNig1|chr16 (5122454-5122625) | |
| 382-547, gnl|xenTro1|scaffold_572 (450793-450630) | |
| 382-547, gnl|xenTro1|scaffold_572 (450633-450792) | |
| 382-547, gnl|xenTro1|scaffold_572 (450627-450794) | |
| 759-1308, gnl|bosTau2|chr18 (41115587-41115022) | |
| 759-1308, gnl|Hg17|chr19 (43565731-43566304) | |
| 759-1308, gnl|Mm7|chr7 (26113975-26113478) |
| Expressed library(ies): 41 entry(ies) | More info |
| Expressed library(ies): 41 entry(ies) | Help | Less info |
| col (0.975039) | |
| csp (0.805932) | |
| cov (0.792917) | |
| nlu (0.766724) | |
| hyp (0.714184) | |
| cje (0.495704) | |
| hlv (0.417769) | |
| elu (0.385356) | |
| ton (0.351) | |
| fbs (0.350693) | |
| ecc (0.345105) | |
| cst (0.280073) | |
| fce (0.271592) | |
| nmm (0.265604) | |
| eep (0.245128) | |
| clu (0.239292) | |
| ebs (0.236602) | |
| med (0.232504) | |
| ece (0.229305) | |
| nms (0.213858) | |
| hea (0.204499) | |
| nbm (0.198649) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| cli (0.152812) | |
| isp (0.150376) | |
| ski (0.146735) | |
| nca (0.136874) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eru (0.120048) | |
| pgl (0.118483) |
| Expressed library(ies): 41 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.975039) | |
| csp (0.805932) | |
| cov (0.792917) | |
| nlu (0.766724) | |
| hyp (0.714184) | |
| cje (0.495704) | |
| hlv (0.417769) | |
| elu (0.385356) | |
| ton (0.351) | |
| fbs (0.350693) | |
| ecc (0.345105) | |
| cst (0.280073) | |
| fce (0.271592) | |
| nmm (0.265604) | |
| eep (0.245128) | |
| clu (0.239292) | |
| ebs (0.236602) | |
| med (0.232504) | |
| ece (0.229305) | |
| nms (0.213858) | |
| hea (0.204499) | |
| nbm (0.198649) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| cli (0.152812) | |
| isp (0.150376) | |
| ski (0.146735) | |
| nca (0.136874) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eru (0.120048) | |
| pgl (0.118483) |