Non-Coding RNA Search

Ss1.1-LyN1-MLN01E050012.5

Sequence:


               
               CCATTTCCGCCCCCAGGGAATAAAGGCTCAGTGACCGCCAGTTCTGCACTGGAGCTCACC
TGCCTCTCTGAGCCCCCAGCGACCGGCTCAAGCCTCCCCTAGGATGGACACGTGGACGGT
ACTGCTCATCCTGCAAGCCTCCCTGGTGCTCCCCGGGGCCGTGGGCACCAGAACCAACAC
CAGGACTGCCCCCACCCCCATCCTGCGTTTTGTGGCCGTGGGGGACTGGGGAGGGGTCCC
CAATGCCCCGTTCCACACAGCCCGGGAAATGGCCAATGCCAAGGCGATTGCCACAACTGT
GAAGACCCTGGGCGCAGATTTCATCCTGTCCCTGGGGGACAATTTCTACTTCACTGGGGT
GCATGATGCCAAAGACAAGAGGTTCCAGGAGACCTTTGAGGATGTGTTTTCTGACCCCTC
CCTCCGCAATGTGCCCTGGCACGTGCTGGCTGGCAACCACGACCATCTGGGGAACGTCTC
GGCACAGATAGCCTATTCTAAGATCTCCAAGCGCTGGAACTTCCCCAGCCCTTACTACCG
CCTGCGCTTCAAGATCCCACGGTCCAATGTGTCTGTGGCCATCTTCATGCTGGACACGGT
GACGCTGTGTGGCAACTCGGACGACTTTGTCAGCCAGCAACCCGAGAGACCCCGCAACCT
GGCGCTGGCCCGCACACAGCTGGCCTGGATCAAGAAGCAGCTGGCGGCAGCCAAGGAGGA
CTATGTGCTGGTGGCCGGCCACTATCCTGTGTGGTCCATCGCCGAGCATGGACCCACCCA
CTGCCTAGTCAAGCAGTTGCTGCCACTGCTGACCACACACAAGGTCACTGCCTACCTGTG
CGGCCATGACCACAACCTGCAGTACCTTCAGGATGAGAATGGCTTGGGCTTTGTGCTGAG
CGGGGCCGGGAACTTCATGGACCCCTCCAAGAAGCACCTGCGCAAGGTCCCCAACGGCTA
CCTGCGCTTCCACTTTGGGGCTGAGAACTCACTAGGTGGCTTCGCCTACGTGGAGATCAC
CCCCAAAGAGATGAGCGTCACTTACATTGAAGCCTCGGGCAAGTCTCTCTTCAAGACCAA
GTTGCCAAGGCGAGCCAGGTCTGAGCACCAGCACCGACGGGCCTGAGAAGTGCCTCCCTG
CTGGCGGGTGGGTGGGTGGGCCCCACTGGGGGCCATCCCCCCCAGCCCTTAAGCAGGCTT
TCCTGGGTACCTGTGGTGCTACGGCAGAGCGGGAAGGAGATGGACAGATGAGGAAATGTG
ATGCCAAGTGGCCCTTGTGACAAGGATGCCCACAGAGGTGAAAGAAGCATGGACACATGT
ACCGGCCAGAGTGCCAGGCCCCATGGCCGGGCTCGCCCAGCCTGACTTCTGGGCAATGGG
GGGTGAGGAAGGAAAGCTCTCTCCTGGGTCAGGCATCCTTCTGTCACTGCCAAATAGTTA
ATAAAAAAAAAAAAAATAGTTGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCATTTCCGCCCCCAGGGAATAAAGGCTCAGTGACCGCCAGTTCTGCACTGGAGCTCACC
TGCCTCTCTGAGCCCCCAGCGACCGGCTCAAGCCTCCCCTAGGATGGACACGTGGACGGT
ACTGCTCATCCTGCAAGCCTCCCTGGTGCTCCCCGGGGCCGTGGGCACCAGAACCAACAC
CAGGACTGCCCCCACCCCCATCCTGCGTTTTGTGGCCGTGGGGGACTGGGGAGGGGTCCC
CAATGCCCCGTTCCACACAGCCCGGGAAATGGCCAATGCCAAGGCGATTGCCACAACTGT
GAAGACCCTGGGCGCAGATTTCATCCTGTCCCTGGGGGACAATTTCTACTTCACTGGGGT
GCATGATGCCAAAGACAAGAGGTTCCAGGAGACCTTTGAGGATGTGTTTTCTGACCCCTC
CCTCCGCAATGTGCCCTGGCACGTGCTGGCTGGCAACCACGACCATCTGGGGAACGTCTC
GGCACAGATAGCCTATTCTAAGATCTCCAAGCGCTGGAACTTCCCCAGCCCTTACTACCG
CCTGCGCTTCAAGATCCCACGGTCCAATGTGTCTGTGGCCATCTTCATGCTGGACACGGT
GACGCTGTGTGGCAACTCGGACGACTTTGTCAGCCAGCAACCCGAGAGACCCCGCAACCT
GGCGCTGGCCCGCACACAGCTGGCCTGGATCAAGAAGCAGCTGGCGGCAGCCAAGGAGGA
CTATGTGCTGGTGGCCGGCCACTATCCTGTGTGGTCCATCGCCGAGCATGGACCCACCCA
CTGCCTAGTCAAGCAGTTGCTGCCACTGCTGACCACACACAAGGTCACTGCCTACCTGTG
CGGCCATGACCACAACCTGCAGTACCTTCAGGATGAGAATGGCTTGGGCTTTGTGCTGAG
CGGGGCCGGGAACTTCATGGACCCCTCCAAGAAGCACCTGCGCAAGGTCCCCAACGGCTA
CCTGCGCTTCCACTTTGGGGCTGAGAACTCACTAGGTGGCTTCGCCTACGTGGAGATCAC
CCCCAAAGAGATGAGCGTCACTTACATTGAAGCCTCGGGCAAGTCTCTCTTCAAGACCAA
GTTGCCAAGGCGAGCCAGGTCTGAGCACCAGCACCGACGGGCCTGAGAAGTGCCTCCCTG
CTGGCGGGTGGGTGGGTGGGCCCCACTGGGGGCCATCCCCCCCAGCCCTTAAGCAGGCTT
TCCTGGGTACCTGTGGTGCTACGGCAGAGCGGGAAGGAGATGGACAGATGAGGAAATGTG
ATGCCAAGTGGCCCTTGTGACAAGGATGCCCACAGAGGTGAAAGAAGCATGGACACATGT
ACCGGCCAGAGTGCCAGGCCCCATGGCCGGGCTCGCCCAGCCTGACTTCTGGGCAATGGG
GGGTGAGGAAGGAAAGCTCTCTCCTGGGTCAGGCATCCTTCTGTCACTGCCAAATAGTTA
ATAAAAAAAAAAAAAATAGTTGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47523494|ref|NP_999374.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47523494|ref|NP_999374.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               151-350, - strand, RNAz p=0.946269
               

               
               1156-1383, - strand, RNAz p=0.886805

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               151-350, - strand, RNAz p=0.946269
               

               
               1156-1383, - strand, RNAz p=0.886805

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               74-389, gnl|bosTau2|chr7 (11406567-11406260)
               

               
               74-389, gnl|Hg17|chr19 (11549160-11548871)
               

               
               74-389, gnl|Mm7|chr9 (22009992-22009692)
               


               
               860-1452, gnl|bosTau2|chr7 (11404826-11404215)
               

               
               860-1452, gnl|Hg17|chr19 (11547070-11546489)
               

               
               860-1452, gnl|Mm7|chr9 (22007095-22006573)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               74-389, gnl|bosTau2|chr7 (11406567-11406260)
               

               
               74-389, gnl|Hg17|chr19 (11549160-11548871)
               

               
               74-389, gnl|Mm7|chr9 (22009992-22009692)
               


               
               860-1452, gnl|bosTau2|chr7 (11404826-11404215)
               

               
               860-1452, gnl|Hg17|chr19 (11547070-11546489)
               

               
               860-1452, gnl|Mm7|chr9 (22007095-22006573)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               ute (39.5698)
               

               
               nmm (1.46082)
               

               
               nca (0.547495)
               

               
               csp (0.483559)
               

               
               lnt (0.426925)
               

               
               cly (0.361925)
               

               
               cut (0.339847)
               

               
               nbm (0.198649)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               pla (0.133672)
               

               
               clu (0.119646)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (39.5698)
               

               
               nmm (1.46082)
               

               
               nca (0.547495)
               

               
               csp (0.483559)
               

               
               lnt (0.426925)
               

               
               cly (0.361925)
               

               
               cut (0.339847)
               

               
               nbm (0.198649)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               pla (0.133672)
               

               
               clu (0.119646)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	151-350, - strand, RNAz p=0.946269
	1156-1383, - strand, RNAz p=0.886805

	74-389, gnl\|bosTau2\|chr7 (11406567-11406260)
	74-389, gnl\|Hg17\|chr19 (11549160-11548871)
	74-389, gnl\|Mm7\|chr9 (22009992-22009692)

	860-1452, gnl\|bosTau2\|chr7 (11404826-11404215)
	860-1452, gnl\|Hg17\|chr19 (11547070-11546489)
	860-1452, gnl\|Mm7\|chr9 (22007095-22006573)

	ute (39.5698)
	nmm (1.46082)
	nca (0.547495)
	csp (0.483559)
	lnt (0.426925)
	cly (0.361925)
	cut (0.339847)
	nbm (0.198649)
	col (0.195008)
	sto (0.179824)
	ill (0.175593)
	duo (0.172801)
	nje (0.16592)
	pla (0.133672)
	clu (0.119646)
	cty (0.10408)
	jej (0.0989218)