Non-Coding RNA Search

Ss1.1-LyN1-MLN01E050022.5

Sequence:


               
               CGCCGGCGGCGTGATGGAACAGCAACAGCAGCAGCAGCAGCAGCTGAGAAACGTGAGTGG
GAGCTAAGTCGCTTAAGGGCCCTGCATCCAGCTAGCATCCCTGTTCGCATGGCGGAAACC
CCAGAGAGCCAGGCATCCAAGGGCTGGGAACCACGGGCCGTGGTACACGGTCCTGGGAAA
GCGCCGGCAGCGCGGCCTTGAGTTGAGACGTGGCCCCCTCTTCGCTGAGTTCCTTGTCCC
CCTTCCTCCCCAGTTGCGGGACTTCCTGTTGGTCTACAATCGGATGACGGAACTCTGCTT
CCAGCGCTGCGTGCCCAGCCTGCATCACCGAGCTCTGGATGCCGAGGAGGTTAGGTGGGG
GAACTGAGTAGGGAAGTGCTCCTCGAGCCTCAGAGCTAACCGTGCACTTGATGGAACAGC
AACAGCAGCAGCAGCAGCAGCTGAGAAACTTGCGGGACTTCCTGTTGGTCTACAATCGGA
TGACGGAACTCTGCTTCCAGCGCTGCGTGCCCAGCCTGCATCACCGAGCTCTGGATGCCG
AGGAGGAGGCCTGTCTGCACAGCTGTGCCGGGAAGCTGATCCATTCCAACCACCGCCTCA
TGGCCGCTTACGTGCAGCTCATGCCTGCCCTGGTACAGCGCCGCATCGCTGACTACGAGG
CTGCCTCAGCTGTGCCAGGTGTTGCTGCTGAACAGCCAGAAGCCTCGCCATCTGGCAGCT
AGCTGTCCTCAACGCTGAGAAGGGAGGCACTGGATGGACCCTCACGTTGAAGGAGCAGTG
GACCTTGGGCAAGATGGAGCCTGTATGTAGAGAATGAGGAGTTGCCTGAGAGCTAGGTAC
TGTTGCTCCTTTTCCTGGAGCTAATAAACCTGCTGTAATCTGTGCGGTTGATATTCTGGG
CAGGGAGAAGTTGCCTTCTGTGTGTGGAAGGAAAACCTCAGCATTCCCAGGCACCTGGTT
AAAGGAAGGTCTGTGGGTACAGCTTTAAAATTGGCAACAAGACGCTGGTTCGTGCCCAGA
CGGCAGAGAAAATGGGAACTCTGTCCTTAAATCTGTCTGACTTAAATGGTTCGCTTAGAG
ATATTTAAGGACCATGGATTAAGAAACCACAGGGCTTTTAGGCACTACCTCTTCGAAAGT
CAGTAGCCCCAGACAGATGAAACCTATAGGACTTCTGGGTGTTCTAGAACGTTAACCACT
CCCCCAAGTTGTTACTTTCTTAATACTCCCAGAAATTGAGCAGTAAATCCTTTAAACCGA
GGAGGTCTGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCGGCGGCGTGATGGAACAGCAACAGCAGCAGCAGCAGCAGCTGAGAAACGTGAGTGG
GAGCTAAGTCGCTTAAGGGCCCTGCATCCAGCTAGCATCCCTGTTCGCATGGCGGAAACC
CCAGAGAGCCAGGCATCCAAGGGCTGGGAACCACGGGCCGTGGTACACGGTCCTGGGAAA
GCGCCGGCAGCGCGGCCTTGAGTTGAGACGTGGCCCCCTCTTCGCTGAGTTCCTTGTCCC
CCTTCCTCCCCAGTTGCGGGACTTCCTGTTGGTCTACAATCGGATGACGGAACTCTGCTT
CCAGCGCTGCGTGCCCAGCCTGCATCACCGAGCTCTGGATGCCGAGGAGGTTAGGTGGGG
GAACTGAGTAGGGAAGTGCTCCTCGAGCCTCAGAGCTAACCGTGCACTTGATGGAACAGC
AACAGCAGCAGCAGCAGCAGCTGAGAAACTTGCGGGACTTCCTGTTGGTCTACAATCGGA
TGACGGAACTCTGCTTCCAGCGCTGCGTGCCCAGCCTGCATCACCGAGCTCTGGATGCCG
AGGAGGAGGCCTGTCTGCACAGCTGTGCCGGGAAGCTGATCCATTCCAACCACCGCCTCA
TGGCCGCTTACGTGCAGCTCATGCCTGCCCTGGTACAGCGCCGCATCGCTGACTACGAGG
CTGCCTCAGCTGTGCCAGGTGTTGCTGCTGAACAGCCAGAAGCCTCGCCATCTGGCAGCT
AGCTGTCCTCAACGCTGAGAAGGGAGGCACTGGATGGACCCTCACGTTGAAGGAGCAGTG
GACCTTGGGCAAGATGGAGCCTGTATGTAGAGAATGAGGAGTTGCCTGAGAGCTAGGTAC
TGTTGCTCCTTTTCCTGGAGCTAATAAACCTGCTGTAATCTGTGCGGTTGATATTCTGGG
CAGGGAGAAGTTGCCTTCTGTGTGTGGAAGGAAAACCTCAGCATTCCCAGGCACCTGGTT
AAAGGAAGGTCTGTGGGTACAGCTTTAAAATTGGCAACAAGACGCTGGTTCGTGCCCAGA
CGGCAGAGAAAATGGGAACTCTGTCCTTAAATCTGTCTGACTTAAATGGTTCGCTTAGAG
ATATTTAAGGACCATGGATTAAGAAACCACAGGGCTTTTAGGCACTACCTCTTCGAAAGT
CAGTAGCCCCAGACAGATGAAACCTATAGGACTTCTGGGTGTTCTAGAACGTTAACCACT
CCCCCAAGTTGTTACTTTCTTAATACTCCCAGAAATTGAGCAGTAAATCCTTTAAACCGA
GGAGGTCTGTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               TIM9B_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               TIM9B_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               781-915, + strand, RNAz p=0.967845

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               781-915, + strand, RNAz p=0.967845

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_012192, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_012192, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               20-408, gnl|bosTau2|chr15 (28753742-28754127)
               

               
               20-408, gnl|Hg17|chr11 (6459354-6459710)
               


               
               544-915, gnl|bosTau2|chr15 (28754255-28754629)
               

               
               544-915, gnl|Hg17|chr11 (6459849-6460223)
               

               
               544-915, gnl|Mm7|chr7 (101697447-101697781)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-408, gnl|bosTau2|chr15 (28753742-28754127)
               

               
               20-408, gnl|Hg17|chr11 (6459354-6459710)
               


               
               544-915, gnl|bosTau2|chr15 (28754255-28754629)
               

               
               544-915, gnl|Hg17|chr11 (6459849-6460223)
               

               
               544-915, gnl|Mm7|chr7 (101697447-101697781)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               nje (0.33184)
               

               
               pty (0.285429)
               

               
               nep (0.183925)
               

               
               duo (0.172801)
               

               
               cli (0.152812)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.33184)
               

               
               pty (0.285429)
               

               
               nep (0.183925)
               

               
               duo (0.172801)
               

               
               cli (0.152812)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)

	20-408, gnl\|bosTau2\|chr15 (28753742-28754127)
	20-408, gnl\|Hg17\|chr11 (6459354-6459710)

	544-915, gnl\|bosTau2\|chr15 (28754255-28754629)
	544-915, gnl\|Hg17\|chr11 (6459849-6460223)
	544-915, gnl\|Mm7\|chr7 (101697447-101697781)

	nje (0.33184)
	pty (0.285429)
	nep (0.183925)
	duo (0.172801)
	cli (0.152812)
	spl (0.143184)
	hyp (0.142837)
	che (0.136314)
	ute (0.132784)
	cly (0.120642)
	pgl (0.118483)
	eje (0.0988338)