Non-Coding RNA Search

Ss1.1-LyN1-MLN01E050068.5

Sequence:


               
               AGAATCGGAAGGAGGGAAGGAGGAAGAGAGGGAGGGAAGAAGCTGGTGATCCCGCCCCAG
CCCAAGTCCAGCCCAAAGCACAGGGCTGACTTTTCCGCCTCGGGCCGGTACTAGCAGCAG
CGGGGTGCACTTCCTTTCTCCTTAGGCTTGAGCAGCCCCACTCAAGTCCAGCCGCAGGTC
ACCAAGAATGGAAATCCCTCCGACCCACTACCCGGCCTCCAGGGCGGCCTCGGTGGCAGA
GAGCTGCATCAACTACCAGCAGGGGACCCCCCACAAGTTGTTTCTGGTGCAGACAGTCAA
ACAAGCCAGCCTAGAGGATATTCCAGGAAAAGGACATAAGTATCGCCTTAAGTTTTCTGT
GGAAGAAATTATCCAAAAACAAGTTACAGTGAATTGCACAGCTGAAGTACTTTACCCTCC
AATGGGACAAGATTCTGCACCAGAAGTCAACTTTACATTTGAAGGAGAAATTGGAAAGAA
CCCAGATGAGGAAGATAACACATTTTATCAAAGACTCAAGTCCATGAAGGAACCACTAGA
AGCACAAAATATCCCAGACAGTTTTGGAAATGTACCTTTGGAAATGAAGCCAGTCCGACA
TTTAGCCTGGGTTGCTTGTGGTTATATAATATGGCAGAATTCTACTGAAAATACATGGTA
TAAAATGGCAAAAATTCAAACTGTCAAGCAAGTGCAAAGAAATGATGACTTCATTGAGTT
AGACTACACCATTCTACTTCATGATATTGCATCTCAGGAGATGATTCCTTGGCAAATGCA
AGTTCTCTGGCATCCACAATATGGCACTAAAGTAAAACATAACAGCCGTCTGCCAAAGGA
AGCACAATTGGAATAAACGAAGACCCTAACCCTGGACGAAGTGTAAACATGTTCATTAGT
GATTTGTTTATGTCTTCTTTGATATATAGCTTAAGTAGTCAGATAAATCCCAAAAGTGTC
ACTTTGTATGAATGACCCTGATTATAGTACAGTACTTCCATAATAAAGAGCATCACAACG
TATAAGTGTCTTATCAACAGTAATAGCACTATGCATATCCCCTAATAAAAGGCTCTTAAC
TCCAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAATCGGAAGGAGGGAAGGAGGAAGAGAGGGAGGGAAGAAGCTGGTGATCCCGCCCCAG
CCCAAGTCCAGCCCAAAGCACAGGGCTGACTTTTCCGCCTCGGGCCGGTACTAGCAGCAG
CGGGGTGCACTTCCTTTCTCCTTAGGCTTGAGCAGCCCCACTCAAGTCCAGCCGCAGGTC
ACCAAGAATGGAAATCCCTCCGACCCACTACCCGGCCTCCAGGGCGGCCTCGGTGGCAGA
GAGCTGCATCAACTACCAGCAGGGGACCCCCCACAAGTTGTTTCTGGTGCAGACAGTCAA
ACAAGCCAGCCTAGAGGATATTCCAGGAAAAGGACATAAGTATCGCCTTAAGTTTTCTGT
GGAAGAAATTATCCAAAAACAAGTTACAGTGAATTGCACAGCTGAAGTACTTTACCCTCC
AATGGGACAAGATTCTGCACCAGAAGTCAACTTTACATTTGAAGGAGAAATTGGAAAGAA
CCCAGATGAGGAAGATAACACATTTTATCAAAGACTCAAGTCCATGAAGGAACCACTAGA
AGCACAAAATATCCCAGACAGTTTTGGAAATGTACCTTTGGAAATGAAGCCAGTCCGACA
TTTAGCCTGGGTTGCTTGTGGTTATATAATATGGCAGAATTCTACTGAAAATACATGGTA
TAAAATGGCAAAAATTCAAACTGTCAAGCAAGTGCAAAGAAATGATGACTTCATTGAGTT
AGACTACACCATTCTACTTCATGATATTGCATCTCAGGAGATGATTCCTTGGCAAATGCA
AGTTCTCTGGCATCCACAATATGGCACTAAAGTAAAACATAACAGCCGTCTGCCAAAGGA
AGCACAATTGGAATAAACGAAGACCCTAACCCTGGACGAAGTGTAAACATGTTCATTAGT
GATTTGTTTATGTCTTCTTTGATATATAGCTTAAGTAGTCAGATAAATCCCAAAAGTGTC
ACTTTGTATGAATGACCCTGATTATAGTACAGTACTTCCATAATAAAGAGCATCACAACG
TATAAGTGTCTTATCAACAGTAATAGCACTATGCATATCCCCTAATAAAAGGCTCTTAAC
TCCAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61843151|ref|XP_582732.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61843151|ref|XP_582732.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               152-1103, gnl|bosTau2|chr2 (13596865-13595904)
               

               
               152-1103, gnl|Hg17|chr5 (157438398-157437427)
               

               
               152-1103, gnl|Mm7|chr3 (67564730-67559004)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               152-1103, gnl|bosTau2|chr2 (13596865-13595904)
               

               
               152-1103, gnl|Hg17|chr5 (157438398-157437427)
               

               
               152-1103, gnl|Mm7|chr3 (67564730-67559004)

Expressed library(ies): 24 entry(ies)

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Expressed library(ies): 24 entry(ies)

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               sug (0.891039)
               

               
               gul (0.532765)
               

               
               fco (0.471624)
               

               
               fat (0.442282)
               

               
               liv (0.438853)
               

               
               nco (0.323468)
               

               
               kid (0.259471)
               

               
               eep (0.245128)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.891039)
               

               
               gul (0.532765)
               

               
               fco (0.471624)
               

               
               fat (0.442282)
               

               
               liv (0.438853)
               

               
               nco (0.323468)
               

               
               kid (0.259471)
               

               
               eep (0.245128)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

	152-1103, gnl\|bosTau2\|chr2 (13596865-13595904)
	152-1103, gnl\|Hg17\|chr5 (157438398-157437427)
	152-1103, gnl\|Mm7\|chr3 (67564730-67559004)

	sug (0.891039)
	gul (0.532765)
	fco (0.471624)
	fat (0.442282)
	liv (0.438853)
	nco (0.323468)
	kid (0.259471)
	eep (0.245128)
	eje (0.197668)
	nep (0.183925)
	sin (0.174948)
	duo (0.172801)
	mga (0.160205)
	ski (0.146735)
	lin (0.145603)
	spl (0.143184)
	pty (0.142714)
	nca (0.136874)
	ova (0.129132)
	thg (0.126791)
	ese (0.126502)
	tra (0.123092)
	pgl (0.118483)
	spc (0.113366)