Non-Coding RNA Search

Ss1.1-LyN1-MLN01E050098.5

Sequence:


               
               GGCACCAGCTGCGGGGCAAGATGGAGGCGCTGATTTTGGAACCCTCCCTGTATACTGTCA
AAGCCATCCTGATTCTGGACAATGATGGAGACCGACTTTTTGCCAAGTACTATGACGACA
CCTACCCCAGTGTCAAGGAGCAAAAGGCCTTTGAGAAGAACATTTTCAACAAGACCCATC
GGACTGACAGTGAGATCGCCCTCCTGGAAGGCCTGACGGTGGTATACAAAAGCAGTATCG
ATCTCTATTTCTATGTGATCGGCAGCTCCTATGAAAACGAGCTGATGCTCATGGCTGTTC
TGAACTGCCTCTTCGACTCATTGAGCCAGATGCTGAGGAAAAACGTAGAAAAGCGAGCTC
TGCTGGAGAACATGGAGGGGCTCTTCTTGGCTGTGGATGAAATCGTAGATGGAGGGGTGA
TCCTGGAGAGTGATCCCCAGCAAGTGGTACACCGGGTAGCGTTAAGGGGAGAAGACGTTC
CCCTGACGGAGCAGACCGTGTCTCAGGTGCTGCAATCAGCCAAGGAACAGATCAAGTGGT
CACTCCTCCGGTGAAGACCCCACTATGCCTGGCTCCTCACTCCCTCAAAAAATCCACATG
TCTGCTGTGACTTCTCATCCAGTCCCCCAACTGACACTCTCAGGGTCATCTCGGGGATCA
CAGGGATCCTTAACTCTCCATCCTGTCTGTGGTTGCCCCCCAAACCCGTATATGCTTCTT
GTTCCTTCTCGGTCTTTTCTGCGGTTCTGGGAGTAAAGCTCTCAGCAGGTTTGGACACAG
GGCTGGGAAGGCACCCTCTTCCTTTCTCCTCTGGATTATGTTCCCGTGCTCTCCTATCCC
CCATATTTTCTCCTCAATTTCTGTACCCTTCAGATCAAAGCAGGAGAAAGAATGTGCTGA
GCGTTTTCCTCCCTTTGCCTTTACGCGGCCTTCGTCTCAGCAGCCCATATGTCCAACGAG
GGGAGGGAGAGAGAATTCTTTTCCATAGAAAGAGTGGGGGTGGGGAGAGGCACATCGGGT
CCCTCTTACTGCCCAGTCCTCCAGCCTGGGAAGAAAGATTGGGAACAGCTCATAGGCAAA
AGACAGAGGGGAAGAAGCGGTGATTTAAGTTTTATTGGAGAGGGCTTATAAAATTCTGTT
TTTCAGACACAGCTGCAGTTTTTTACTCTGATCCTAGCTTATAGCTTCAAACTGCTGTGG
TTTGTGAGTGCTCCTTGTGGGAGTGTCCATCTCTTGGTCCGAATAGCTTAACTCACTACC
TTCACCACCCGTGGGATCTTTGCCTGGCTCGTTCTCTCTGTGCCCTGGAGCAAGGCCAGT
CCCTGAATCAAAACTCCATTCTGGTCTTGGGAAGAAGAGTATCTGCTCAGAACTGGGGGA
CAGAGTGGAATTTATGACTTGGGCCTCTGGGTTCTCTCAGTCCCCTTCTCTCCCTCACAA
TGCATTTCCCTCCGTCTGTCTTGGGGCTGCGATCTCTGCCGCTTAACTCTGTCCTCTCTC
TGCCTCAGTCTTACATCCAGGCAGTAGGTCTGGGCGCTTCCCCAGCCTTGGTCGCTGAGA
GAGGTACCTTTCTTCCGAAAACCTTTGGGATTTGGATTTTCCCAGGAAGATGGAGGATGG
AACACCACTGTTGGGTCTCAAAACTTCCCACAAAAATGTCTCAAAAAACCTTCCTGAGAC
TTAGCATTCTGCCCCACTCACTCACTGCCAGTTCTCCAAGACTGAAGTGGGGGCAGATAA
CTGGGCATCCTTGAGGGGGGCGTTTTTGTGTAAGAGATGTATGGAGTCAGGATGATGGCC
ACCTTCAGGTACTGCTCTGTGCAAAAAGGAATAAAACATTTTTTTTTCCAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCACCAGCTGCGGGGCAAGATGGAGGCGCTGATTTTGGAACCCTCCCTGTATACTGTCA
AAGCCATCCTGATTCTGGACAATGATGGAGACCGACTTTTTGCCAAGTACTATGACGACA
CCTACCCCAGTGTCAAGGAGCAAAAGGCCTTTGAGAAGAACATTTTCAACAAGACCCATC
GGACTGACAGTGAGATCGCCCTCCTGGAAGGCCTGACGGTGGTATACAAAAGCAGTATCG
ATCTCTATTTCTATGTGATCGGCAGCTCCTATGAAAACGAGCTGATGCTCATGGCTGTTC
TGAACTGCCTCTTCGACTCATTGAGCCAGATGCTGAGGAAAAACGTAGAAAAGCGAGCTC
TGCTGGAGAACATGGAGGGGCTCTTCTTGGCTGTGGATGAAATCGTAGATGGAGGGGTGA
TCCTGGAGAGTGATCCCCAGCAAGTGGTACACCGGGTAGCGTTAAGGGGAGAAGACGTTC
CCCTGACGGAGCAGACCGTGTCTCAGGTGCTGCAATCAGCCAAGGAACAGATCAAGTGGT
CACTCCTCCGGTGAAGACCCCACTATGCCTGGCTCCTCACTCCCTCAAAAAATCCACATG
TCTGCTGTGACTTCTCATCCAGTCCCCCAACTGACACTCTCAGGGTCATCTCGGGGATCA
CAGGGATCCTTAACTCTCCATCCTGTCTGTGGTTGCCCCCCAAACCCGTATATGCTTCTT
GTTCCTTCTCGGTCTTTTCTGCGGTTCTGGGAGTAAAGCTCTCAGCAGGTTTGGACACAG
GGCTGGGAAGGCACCCTCTTCCTTTCTCCTCTGGATTATGTTCCCGTGCTCTCCTATCCC
CCATATTTTCTCCTCAATTTCTGTACCCTTCAGATCAAAGCAGGAGAAAGAATGTGCTGA
GCGTTTTCCTCCCTTTGCCTTTACGCGGCCTTCGTCTCAGCAGCCCATATGTCCAACGAG
GGGAGGGAGAGAGAATTCTTTTCCATAGAAAGAGTGGGGGTGGGGAGAGGCACATCGGGT
CCCTCTTACTGCCCAGTCCTCCAGCCTGGGAAGAAAGATTGGGAACAGCTCATAGGCAAA
AGACAGAGGGGAAGAAGCGGTGATTTAAGTTTTATTGGAGAGGGCTTATAAAATTCTGTT
TTTCAGACACAGCTGCAGTTTTTTACTCTGATCCTAGCTTATAGCTTCAAACTGCTGTGG
TTTGTGAGTGCTCCTTGTGGGAGTGTCCATCTCTTGGTCCGAATAGCTTAACTCACTACC
TTCACCACCCGTGGGATCTTTGCCTGGCTCGTTCTCTCTGTGCCCTGGAGCAAGGCCAGT
CCCTGAATCAAAACTCCATTCTGGTCTTGGGAAGAAGAGTATCTGCTCAGAACTGGGGGA
CAGAGTGGAATTTATGACTTGGGCCTCTGGGTTCTCTCAGTCCCCTTCTCTCCCTCACAA
TGCATTTCCCTCCGTCTGTCTTGGGGCTGCGATCTCTGCCGCTTAACTCTGTCCTCTCTC
TGCCTCAGTCTTACATCCAGGCAGTAGGTCTGGGCGCTTCCCCAGCCTTGGTCGCTGAGA
GAGGTACCTTTCTTCCGAAAACCTTTGGGATTTGGATTTTCCCAGGAAGATGGAGGATGG
AACACCACTGTTGGGTCTCAAAACTTCCCACAAAAATGTCTCAAAAAACCTTCCTGAGAC
TTAGCATTCTGCCCCACTCACTCACTGCCAGTTCTCCAAGACTGAAGTGGGGGCAGATAA
CTGGGCATCCTTGAGGGGGGCGTTTTTGTGTAAGAGATGTATGGAGTCAGGATGATGGCC
ACCTTCAGGTACTGCTCTGTGCAAAAAGGAATAAAACATTTTTTTTTCCAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|33150526|gb|AAP97141.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|33150526|gb|AAP97141.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1458-1573, - strand, RNAz p=0.954567
               

               
               1640-1852, - strand, RNAz p=0.992431

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1458-1573, - strand, RNAz p=0.954567
               

               
               1640-1852, - strand, RNAz p=0.992431

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               2-467, gnl|bosTau2|chr6 (38074105-38074560)
               

               
               2-467, gnl|Hg17|chr12 (53020567-53028102)
               

               
               2-467, gnl|Mm7|chr4 (19920673-19920264)
               


               
               101-205, gnl|bosTau2|chr5 (16481293-16481190)
               

               
               101-205, gnl|Hg17|chr12 (53022250-53022353)
               


               
               1024-1852, gnl|bosTau2|chr5 (16474826-16473980)
               

               
               1024-1852, gnl|Hg17|chr12 (53031104-53031897)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-467, gnl|bosTau2|chr6 (38074105-38074560)
               

               
               2-467, gnl|Hg17|chr12 (53020567-53028102)
               

               
               2-467, gnl|Mm7|chr4 (19920673-19920264)
               


               
               101-205, gnl|bosTau2|chr5 (16481293-16481190)
               

               
               101-205, gnl|Hg17|chr12 (53022250-53022353)
               


               
               1024-1852, gnl|bosTau2|chr5 (16474826-16473980)
               

               
               1024-1852, gnl|Hg17|chr12 (53031104-53031897)

Expressed library(ies): 33 entry(ies)

More info

Expressed library(ies): 33 entry(ies)

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               nje (0.49776)
               

               
               eep (0.490256)
               

               
               eru (0.480192)
               

               
               amn (0.417711)
               

               
               cty (0.41632)
               

               
               fbs (0.350693)
               

               
               med (0.348756)
               

               
               eye (0.341006)
               

               
               eje (0.296501)
               

               
               spl (0.286369)
               

               
               pty (0.285429)
               

               
               cst (0.280073)
               

               
               cga (0.279096)
               

               
               cov (0.264306)
               

               
               cly (0.241284)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               csp (0.161186)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ese (0.126502)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)

Expressed library(ies): 33 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.49776)
               

               
               eep (0.490256)
               

               
               eru (0.480192)
               

               
               amn (0.417711)
               

               
               cty (0.41632)
               

               
               fbs (0.350693)
               

               
               med (0.348756)
               

               
               eye (0.341006)
               

               
               eje (0.296501)
               

               
               spl (0.286369)
               

               
               pty (0.285429)
               

               
               cst (0.280073)
               

               
               cga (0.279096)
               

               
               cov (0.264306)
               

               
               cly (0.241284)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               csp (0.161186)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ese (0.126502)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)

	1458-1573, - strand, RNAz p=0.954567
	1640-1852, - strand, RNAz p=0.992431

	2-467, gnl\|bosTau2\|chr6 (38074105-38074560)
	2-467, gnl\|Hg17\|chr12 (53020567-53028102)
	2-467, gnl\|Mm7\|chr4 (19920673-19920264)

	101-205, gnl\|bosTau2\|chr5 (16481293-16481190)
	101-205, gnl\|Hg17\|chr12 (53022250-53022353)

	1024-1852, gnl\|bosTau2\|chr5 (16474826-16473980)
	1024-1852, gnl\|Hg17\|chr12 (53031104-53031897)

	nje (0.49776)
	eep (0.490256)
	eru (0.480192)
	amn (0.417711)
	cty (0.41632)
	fbs (0.350693)
	med (0.348756)
	eye (0.341006)
	eje (0.296501)
	spl (0.286369)
	pty (0.285429)
	cst (0.280073)
	cga (0.279096)
	cov (0.264306)
	cly (0.241284)
	jej (0.197844)
	col (0.195008)
	fty (0.17584)
	ill (0.175593)
	sin (0.174948)
	mcp (0.170648)
	cut (0.169924)
	csp (0.161186)
	liv (0.146284)
	hyp (0.142837)
	lnt (0.142308)
	nca (0.136874)
	ese (0.126502)
	clu (0.119646)
	pgl (0.118483)
	ecc (0.115035)
	cbl (0.114797)
	jca (0.11396)