Non-Coding RNA Search

Ss1.1-LyN1-MLN01E060050.5

Sequence:


               
               TCCGCGGGTCCCAGGGAGGTCCCAGTAGCCTCAGCGCAGGTGAACAGGACGCCGCCGTCT
CCAGCCTACACCATGACCCAGCCGGTGCCCCGGCTCTCTGTGCCCGCCGCGCTGGCCTTG
GGTTCGGCCGCACTGGGCGCCGCCTTTGCCAGCGGCCTCTTCCTCGGGAGACGGTTCCCT
CCACGGCGATCCCGGCAAGAGAAGCGACTGCTGCCCCCTGAGGACAGCCCCCTGTGGCAG
TATCTGCTGAGCCGCTCCCTGCGGGAACACCCGGCGCTGCGGAGTCTGCGGCTGCTGACC
TTGGAGCAGCCGCAGGGGGATTCCATGATGACCTGTGAGCAGGCCCAGCTCCTAGCCAAC
CTGGCTCGCCTCATCAAGGCTAAGAAGGCGCTGGATCTGGGCACTTTCACAGGCTACTCA
GCCCTAGCGTTGGCCCTGGCGCTGCCGCCTGCCGGGCGCGTGGTGACCTGCGAAGTTGAT
GCGGGGCCCCCAGAGCTGGGGCGGCCCCTGTGGAGGCAGGCTGAGGAGGAGCACAAGATC
GACCTTCGGTTGAAGCCTGCCTTGGAAACCCTGGACGAGCTCCTGGCCGCGGGCGAGGCT
GGCACCTTCGATGTGGCCGTGGTGGACGCAGACAAGGAGAACTGCACCGCTTACTATGAG
CGCTGCCTTCAGCTGCTGCGACCTGGGGGCGTCCTCGCTGTACTCAATGTCTTGTGCCAT
GGAGAGGTGTTGCAGCCTCAACCGCAGGACAAAGTGGTCCAGTGTGTGCGAAACCTGAAT
GAGCGCATCCTGAGAGATGCCCGGGTCCACATCAGCCTCCTGCCCCTGGGCGACGGCCTT
ACCTTAGCCTTCAAGATCTAGAGCTGGCCACTAGGGAGTGGCCTCAAGGGAGGGGCCCTG
GGAATCGCAGTTTTAAATCTGACAATAAAGTGAGGTCTGGGAAGAGAAATTCTGAGCCTC
CCTAAGTGCTGAGATGGGGTAGGGAGGGAAGGCCCACACTGACTGCACCTTCAGCAGAAG
GGAACTTTTGACACCACAGACCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCGCGGGTCCCAGGGAGGTCCCAGTAGCCTCAGCGCAGGTGAACAGGACGCCGCCGTCT
CCAGCCTACACCATGACCCAGCCGGTGCCCCGGCTCTCTGTGCCCGCCGCGCTGGCCTTG
GGTTCGGCCGCACTGGGCGCCGCCTTTGCCAGCGGCCTCTTCCTCGGGAGACGGTTCCCT
CCACGGCGATCCCGGCAAGAGAAGCGACTGCTGCCCCCTGAGGACAGCCCCCTGTGGCAG
TATCTGCTGAGCCGCTCCCTGCGGGAACACCCGGCGCTGCGGAGTCTGCGGCTGCTGACC
TTGGAGCAGCCGCAGGGGGATTCCATGATGACCTGTGAGCAGGCCCAGCTCCTAGCCAAC
CTGGCTCGCCTCATCAAGGCTAAGAAGGCGCTGGATCTGGGCACTTTCACAGGCTACTCA
GCCCTAGCGTTGGCCCTGGCGCTGCCGCCTGCCGGGCGCGTGGTGACCTGCGAAGTTGAT
GCGGGGCCCCCAGAGCTGGGGCGGCCCCTGTGGAGGCAGGCTGAGGAGGAGCACAAGATC
GACCTTCGGTTGAAGCCTGCCTTGGAAACCCTGGACGAGCTCCTGGCCGCGGGCGAGGCT
GGCACCTTCGATGTGGCCGTGGTGGACGCAGACAAGGAGAACTGCACCGCTTACTATGAG
CGCTGCCTTCAGCTGCTGCGACCTGGGGGCGTCCTCGCTGTACTCAATGTCTTGTGCCAT
GGAGAGGTGTTGCAGCCTCAACCGCAGGACAAAGTGGTCCAGTGTGTGCGAAACCTGAAT
GAGCGCATCCTGAGAGATGCCCGGGTCCACATCAGCCTCCTGCCCCTGGGCGACGGCCTT
ACCTTAGCCTTCAAGATCTAGAGCTGGCCACTAGGGAGTGGCCTCAAGGGAGGGGCCCTG
GGAATCGCAGTTTTAAATCTGACAATAAAGTGAGGTCTGGGAAGAGAAATTCTGAGCCTC
CCTAAGTGCTGAGATGGGGTAGGGAGGGAAGGCCCACACTGACTGCACCTTCAGCAGAAG
GGAACTTTTGACACCACAGACCTC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q8BIG7_MOUSE

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q8BIG7_MOUSE

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               166-305, gnl|bosTau2|chr28 (23881204-23881343)
               

               
               166-305, gnl|Hg17|chr10 (76665508-76665369)
               

               
               166-305, gnl|Mm7|chr14 (19507342-19507203)
               


               
               400-520, gnl|bosTau2|chr28 (23881768-23881888)
               

               
               400-520, gnl|Hg17|chr10 (76664943-76664823)
               

               
               400-520, gnl|Mm7|chr14 (19506794-19506674)
               


               
               709-977, gnl|bosTau2|chr28 (23882674-23882955)
               

               
               709-977, gnl|Hg17|chr10 (76663989-76663692)
               

               
               709-977, gnl|Mm7|chr14 (19506100-19505846)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               166-305, gnl|bosTau2|chr28 (23881204-23881343)
               

               
               166-305, gnl|Hg17|chr10 (76665508-76665369)
               

               
               166-305, gnl|Mm7|chr14 (19507342-19507203)
               


               
               400-520, gnl|bosTau2|chr28 (23881768-23881888)
               

               
               400-520, gnl|Hg17|chr10 (76664943-76664823)
               

               
               400-520, gnl|Mm7|chr14 (19506794-19506674)
               


               
               709-977, gnl|bosTau2|chr28 (23882674-23882955)
               

               
               709-977, gnl|Hg17|chr10 (76663989-76663692)
               

               
               709-977, gnl|Mm7|chr14 (19506100-19505846)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               che (0.272628)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.272628)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	166-305, gnl\|bosTau2\|chr28 (23881204-23881343)
	166-305, gnl\|Hg17\|chr10 (76665508-76665369)
	166-305, gnl\|Mm7\|chr14 (19507342-19507203)

	400-520, gnl\|bosTau2\|chr28 (23881768-23881888)
	400-520, gnl\|Hg17\|chr10 (76664943-76664823)
	400-520, gnl\|Mm7\|chr14 (19506794-19506674)

	709-977, gnl\|bosTau2\|chr28 (23882674-23882955)
	709-977, gnl\|Hg17\|chr10 (76663989-76663692)
	709-977, gnl\|Mm7\|chr14 (19506100-19505846)

	che (0.272628)
	ill (0.175593)
	duo (0.172801)
	mcp (0.170648)
	nje (0.16592)
	cli (0.152812)
	hyp (0.142837)
	hlv (0.139256)
	ssp (0.13552)
	pla (0.133672)
	ecc (0.115035)
	eje (0.0988338)