Non-Coding RNA Search

Ss1.1-LyN1-MLN01E060098.5

Sequence:


               
               TTAGAGCTCTGGATAGCTGTGGTGACGGGTTCACGCTAATGCACAGCATGTGGCAGCTGC
TGTCACCAACGGCTCTGCTGCTTCTGGTTTCAGCTGGCACACAAGCTGAAGATCCCCCGA
AGTCTGTGGTGATCCTAGACCCTCCATGGGACCGGTTGCTTGAGAAGGATTCTGTGACTC
TGAAGTGCCAGGGGGCCTACCCTCCTGGAGACGATTCCACAGAGTGGAGGTGGAATGGGA
CCCTCATCTCAAACAAGGCCTCCAGCTACTCAATCACAGATGCTACAGTTGGGAACAGTG
GAGAATACACGTGTAAGACAGGCCTCTCTGCACAGAGTGACCCATTGCGACTAGAAGTCT
ACAAGGGCTGGCTGTTGCTCCAGGCTCCTCGGTGGGTGGTCCAGGAGGGGGAGTCCATTA
GGCTGAGGTGCCACACCTGGAAGAACATTACAATACAAAAGGTCCAATATTTCCAGAATG
GCATGGGGAAGAAGTTTTCTCATCAGAATTTTGAATACCACATTCCAAATGCAACACTCA
AAGATGGTGGCTCCTACTTCTGCAGAGGAATTATCAAGAATTACAATTTGTCTTCGGAGG
CTGTGAAAGTCACTGTTCAAGGTTCAAAAAGTCCATCACCTATCCTATCATTCTTTCTAC
CTTGGCACCAAATCATTTTCTGCCTGGTGATGGGATTCCTGTTTGCAGTGGACACGGGGC
TGTATTTTTCTGTGCGGAAAGTACTTCGAAGCTCAAAGGAGGACTGGAGGAATGGCAAAG
TCACATGGAGCCGGGACCCGCAGGACAAAGGAGGATAACAAAAGCAGCAGCATCACCACC
ACCACTGCTTTTATTATCCCATGGAGTAATAAAAGCAGCATCTCTGAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAGAGCTCTGGATAGCTGTGGTGACGGGTTCACGCTAATGCACAGCATGTGGCAGCTGC
TGTCACCAACGGCTCTGCTGCTTCTGGTTTCAGCTGGCACACAAGCTGAAGATCCCCCGA
AGTCTGTGGTGATCCTAGACCCTCCATGGGACCGGTTGCTTGAGAAGGATTCTGTGACTC
TGAAGTGCCAGGGGGCCTACCCTCCTGGAGACGATTCCACAGAGTGGAGGTGGAATGGGA
CCCTCATCTCAAACAAGGCCTCCAGCTACTCAATCACAGATGCTACAGTTGGGAACAGTG
GAGAATACACGTGTAAGACAGGCCTCTCTGCACAGAGTGACCCATTGCGACTAGAAGTCT
ACAAGGGCTGGCTGTTGCTCCAGGCTCCTCGGTGGGTGGTCCAGGAGGGGGAGTCCATTA
GGCTGAGGTGCCACACCTGGAAGAACATTACAATACAAAAGGTCCAATATTTCCAGAATG
GCATGGGGAAGAAGTTTTCTCATCAGAATTTTGAATACCACATTCCAAATGCAACACTCA
AAGATGGTGGCTCCTACTTCTGCAGAGGAATTATCAAGAATTACAATTTGTCTTCGGAGG
CTGTGAAAGTCACTGTTCAAGGTTCAAAAAGTCCATCACCTATCCTATCATTCTTTCTAC
CTTGGCACCAAATCATTTTCTGCCTGGTGATGGGATTCCTGTTTGCAGTGGACACGGGGC
TGTATTTTTCTGTGCGGAAAGTACTTCGAAGCTCAAAGGAGGACTGGAGGAATGGCAAAG
TCACATGGAGCCGGGACCCGCAGGACAAAGGAGGATAACAAAAGCAGCAGCATCACCACC
ACCACTGCTTTTATTATCCCATGGAGTAATAAAAGCAGCATCTCTGAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|2136491|pir||I47163

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2136491|pir||I47163

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

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               110-362, gnl|bosTau2|chr3 (19154256-19154508)
               

               
               110-362, gnl|Hg17|chr1 (158331522-158331270)
               

               
               110-362, gnl|Mm7|chr1 (170996370-170996622)
               


               
               366-623, gnl|bosTau2|chr3 (19157103-19157360)
               

               
               366-623, gnl|Hg17|chr1 (158327804-158327544)
               

               
               366-623, gnl|Mm7|chr1 (171002019-171002276)
               


               
               643-812, gnl|bosTau2|chr3 (19189878-19189710)
               

               
               643-812, gnl|Hg17|chr1 (158326034-158325857)
               

               
               643-812, gnl|Mm7|chr1 (171028318-171028144)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               110-362, gnl|bosTau2|chr3 (19154256-19154508)
               

               
               110-362, gnl|Hg17|chr1 (158331522-158331270)
               

               
               110-362, gnl|Mm7|chr1 (170996370-170996622)
               


               
               366-623, gnl|bosTau2|chr3 (19157103-19157360)
               

               
               366-623, gnl|Hg17|chr1 (158327804-158327544)
               

               
               366-623, gnl|Mm7|chr1 (171002019-171002276)
               


               
               643-812, gnl|bosTau2|chr3 (19189878-19189710)
               

               
               643-812, gnl|Hg17|chr1 (158326034-158325857)
               

               
               643-812, gnl|Mm7|chr1 (171028318-171028144)

Expressed library(ies): 37 entry(ies)

More info

Expressed library(ies): 37 entry(ies)

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               csp (1.28949)
               

               
               spl (0.859107)
               

               
               cly (0.723851)
               

               
               spc (0.680195)
               

               
               col (0.585023)
               

               
               lnt (0.569233)
               

               
               cje (0.495704)
               

               
               che (0.408942)
               

               
               nlu (0.383362)
               

               
               cmu (0.372787)
               

               
               liv (0.292569)
               

               
               cov (0.264306)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               jca (0.22792)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)

Expressed library(ies): 37 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (1.28949)
               

               
               spl (0.859107)
               

               
               cly (0.723851)
               

               
               spc (0.680195)
               

               
               col (0.585023)
               

               
               lnt (0.569233)
               

               
               cje (0.495704)
               

               
               che (0.408942)
               

               
               nlu (0.383362)
               

               
               cmu (0.372787)
               

               
               liv (0.292569)
               

               
               cov (0.264306)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               jca (0.22792)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)

	110-362, gnl\|bosTau2\|chr3 (19154256-19154508)
	110-362, gnl\|Hg17\|chr1 (158331522-158331270)
	110-362, gnl\|Mm7\|chr1 (170996370-170996622)

	366-623, gnl\|bosTau2\|chr3 (19157103-19157360)
	366-623, gnl\|Hg17\|chr1 (158327804-158327544)
	366-623, gnl\|Mm7\|chr1 (171002019-171002276)

	643-812, gnl\|bosTau2\|chr3 (19189878-19189710)
	643-812, gnl\|Hg17\|chr1 (158326034-158325857)
	643-812, gnl\|Mm7\|chr1 (171028318-171028144)

	csp (1.28949)
	spl (0.859107)
	cly (0.723851)
	spc (0.680195)
	col (0.585023)
	lnt (0.569233)
	cje (0.495704)
	che (0.408942)
	nlu (0.383362)
	cmu (0.372787)
	liv (0.292569)
	cov (0.264306)
	thg (0.253582)
	tra (0.246184)
	mgp (0.230681)
	jca (0.22792)
	tes (0.207814)
	hea (0.204499)
	ldo (0.194005)
	sag (0.182715)
	sto (0.179824)
	sin (0.174948)
	rec (0.17307)
	mga (0.160205)
	lun (0.150489)
	isp (0.150376)
	bfe (0.149858)
	ski (0.146735)
	lin (0.145603)
	hyp (0.142837)
	csk (0.140746)
	nmm (0.132802)
	ute (0.132784)
	kid (0.129735)
	bla (0.124347)
	cbl (0.114797)
	jej (0.0989218)