Ss1.1-LyN1-MLN01E070009.5.5
|
GCCCTTTTTCCCCCCCGGGAGCGGTGCTAGGCCTGCTGCTCTGTGGCAAGCCGCCGATTG
GGAGCTCTGTTCTGCAGGATGGGGTTTGTAAAAGTCGTCAAGAATAAGGCTTACTTCAAG
AGGTACCAGGTGAAATTTAGAAGACGACGAGAGGGTAAAACTGACTACTATGCCCGGAAA
CGATTGGTCATCCAAGATAAAAATAAGTATAACACACCAAAATACAGGATGATAGTTCGT
GTAACCAACAGAGATATAATTTGTCAGATTGCTTATGCCCGTATAGAAGGAGATATGATA
GTTTGTGCAGCTTATGCTCACGAACTCCCAAAGTATGGCGTGAAGGTCGGCCTGACAAAT
TATGCTGCAGCTTATTGTACTGGCCTGCTGCTGGCCCGCAGGCTTCTTAATAGGTTTGGT
ATGGACAAGATTTACGAAGGCCAGGTCGAGGTGACTGGAGATGAATACAATGTGGAAAGC
ATCGACGGTCAGCCTGGTGCCTTCACCTGTTACCTGGATGCAGGGCTTGCCAGGACGACT
ACTGGAAACAAAGTTTTTGGGGCCCTGAAGGGAGCCGTAGATGGAGGCCTGTCTATCCCT
CACAGCACCAAACGATTCCCTGGTTATGATTCAGAAAGCAAAGAATTCAATGCTGAAGTG
CACCGAAAGCACATCCTGGGGCAGAATGTTGCAGATTATATGCGTTACCTGATTGAAGAA
GATGAGGATGCTTACAAGAAACAGTTCTCTCAGTACATAAAGAACAACGTGACTCCAGAC
ATGATGGAGGAAATGTATAAGAAAGCTCATGCTGCGATACGAGAGAATCCAGTGTATGAG
AAGAAGCCTAAGAAAGAAGTTAAAAAGAAGAGGTGGAATCGTCCCAAAATGTCACTTGCC
CAGAAGAAAGATCGGGTTGCTCAGAAGAAAGCAAGCTTCCTTCGAGCTCAGGAACGGGCT
GCTGAGAGCTAATAAACCAGGCCATAGTTTTTCTATGAAGATTTTTTCAAAGACATTAAT
AAATGTATCAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCCCTTTTTCCCCCCCGGGAGCGGTGCTAGGCCTGCTGCTCTGTGGCAAGCCGCCGATTG
GGAGCTCTGTTCTGCAGGATGGGGTTTGTAAAAGTCGTCAAGAATAAGGCTTACTTCAAG
AGGTACCAGGTGAAATTTAGAAGACGACGAGAGGGTAAAACTGACTACTATGCCCGGAAA
CGATTGGTCATCCAAGATAAAAATAAGTATAACACACCAAAATACAGGATGATAGTTCGT
GTAACCAACAGAGATATAATTTGTCAGATTGCTTATGCCCGTATAGAAGGAGATATGATA
GTTTGTGCAGCTTATGCTCACGAACTCCCAAAGTATGGCGTGAAGGTCGGCCTGACAAAT
TATGCTGCAGCTTATTGTACTGGCCTGCTGCTGGCCCGCAGGCTTCTTAATAGGTTTGGT
ATGGACAAGATTTACGAAGGCCAGGTCGAGGTGACTGGAGATGAATACAATGTGGAAAGC
ATCGACGGTCAGCCTGGTGCCTTCACCTGTTACCTGGATGCAGGGCTTGCCAGGACGACT
ACTGGAAACAAAGTTTTTGGGGCCCTGAAGGGAGCCGTAGATGGAGGCCTGTCTATCCCT
CACAGCACCAAACGATTCCCTGGTTATGATTCAGAAAGCAAAGAATTCAATGCTGAAGTG
CACCGAAAGCACATCCTGGGGCAGAATGTTGCAGATTATATGCGTTACCTGATTGAAGAA
GATGAGGATGCTTACAAGAAACAGTTCTCTCAGTACATAAAGAACAACGTGACTCCAGAC
ATGATGGAGGAAATGTATAAGAAAGCTCATGCTGCGATACGAGAGAATCCAGTGTATGAG
AAGAAGCCTAAGAAAGAAGTTAAAAAGAAGAGGTGGAATCGTCCCAAAATGTCACTTGCC
CAGAAGAAAGATCGGGTTGCTCAGAAGAAAGCAAGCTTCCTTCGAGCTCAGGAACGGGCT
GCTGAGAGCTAATAAACCAGGCCATAGTTTTTCTATGAAGATTTTTTCAAAGACATTAAT
AAATGTATCAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
sto (8.27189) |
|
mgp (6.92042) |
|
thg (6.21276) |
|
bla (6.09301) |
|
cmu (5.5918) |
|
ova (4.3905) |
|
csk (4.22238) |
|
isp (3.90977) |
|
sag (3.83702) |
|
cut (3.73832) |
|
fat (3.53826) |
|
rec (3.11526) |
|
sug (3.05499) |
|
sme (3.05437) |
|
tra (2.95421) |
|
spl (2.7205) |
|
ste (2.70416) |
|
pro (2.56016) |
|
ski (2.4945) |
|
pgl (2.36967) |
|
aor (2.34329) |
|
vin (2.3279) |
|
med (2.32504) |
|
sin (2.27432) |
|
cje (2.14805) |
|
gul (2.13106) |
|
eje (2.07551) |
|
eep (1.96102) |
|
elu (1.92678) |
|
mga (1.92246) |
|
che (1.9084) |
|
pan (1.88768) |
|
lnt (1.85001) |
|
ldo (1.84305) |
|
cki (1.81758) |
|
kid (1.81629) |
|
col (1.75507) |
|
pty (1.71257) |
|
nje (1.6592) |
|
nep (1.65532) |
|
bfe (1.64843) |
|
nco (1.61734) |
|
tbr (1.54178) |
|
ssp (1.49072) |
|
cbe (1.43541) |
|
hea (1.43149) |
|
spc (1.36039) |
|
lun (1.3544) |
|
lyg (1.33103) |
|
eru (1.32053) |
|
nms (1.28315) |
|
ecc (1.26539) |
|
amn (1.25313) |
|
ret (1.1586) |
|
nlu (1.15009) |
|
jca (1.1396) |
|
fce (1.08637) |
|
mgm (1.08206) |
|
ill (1.05356) |
|
liv (1.02399) |
|
mcp (1.02389) |
|
fli (1.0144) |
|
ebs (0.94641) |
|
fty (0.879198) |
|
cst (0.840218) |
|
hlv (0.835538) |
|
nca (0.821243) |
|
nmm (0.796813) |
|
fcc (0.791139) |
|
eli (0.759071) |
|
lin (0.728014) |
|
fbs (0.701385) |
|
jej (0.692452) |
|
ece (0.687916) |
|
eye (0.682012) |
|
fhi (0.678311) |
|
mas (0.630915) |
|
cag (0.604778) |
|
ese (0.506009) |
|
csp (0.483559) |
|
tes (0.415628) |
|
cty (0.31224) |
|
nbm (0.297974) |
|
cte (0.29274) |
|
hyp (0.285673) |
|
cga (0.279096) |
|
ute (0.265569) |
|
cov (0.264306) |
|
cly (0.241284) |
|
clu (0.239292) |
|
duo (0.172801) |
|
fco (0.157208) |
|
cli (0.152812) |
|
cbl (0.114797) |
|
sto (8.27189) |
|
mgp (6.92042) |
|
thg (6.21276) |
|
bla (6.09301) |
|
cmu (5.5918) |
|
ova (4.3905) |
|
csk (4.22238) |
|
isp (3.90977) |
|
sag (3.83702) |
|
cut (3.73832) |
|
fat (3.53826) |
|
rec (3.11526) |
|
sug (3.05499) |
|
sme (3.05437) |
|
tra (2.95421) |
|
spl (2.7205) |
|
ste (2.70416) |
|
pro (2.56016) |
|
ski (2.4945) |
|
pgl (2.36967) |
|
aor (2.34329) |
|
vin (2.3279) |
|
med (2.32504) |
|
sin (2.27432) |
|
cje (2.14805) |
|
gul (2.13106) |
|
eje (2.07551) |
|
eep (1.96102) |
|
elu (1.92678) |
|
mga (1.92246) |
|
che (1.9084) |
|
pan (1.88768) |
|
lnt (1.85001) |
|
ldo (1.84305) |
|
cki (1.81758) |
|
kid (1.81629) |
|
col (1.75507) |
|
pty (1.71257) |
|
nje (1.6592) |
|
nep (1.65532) |
|
bfe (1.64843) |
|
nco (1.61734) |
|
tbr (1.54178) |
|
ssp (1.49072) |
|
cbe (1.43541) |
|
hea (1.43149) |
|
spc (1.36039) |
|
lun (1.3544) |
|
lyg (1.33103) |
|
eru (1.32053) |
|
nms (1.28315) |
|
ecc (1.26539) |
|
amn (1.25313) |
|
ret (1.1586) |
|
nlu (1.15009) |
|
jca (1.1396) |
|
fce (1.08637) |
|
mgm (1.08206) |
|
ill (1.05356) |
|
liv (1.02399) |
|
mcp (1.02389) |
|
fli (1.0144) |
|
ebs (0.94641) |
|
fty (0.879198) |
|
cst (0.840218) |
|
hlv (0.835538) |
|
nca (0.821243) |
|
nmm (0.796813) |
|
fcc (0.791139) |
|
eli (0.759071) |
|
lin (0.728014) |
|
fbs (0.701385) |
|
jej (0.692452) |
|
ece (0.687916) |
|
eye (0.682012) |
|
fhi (0.678311) |
|
mas (0.630915) |
|
cag (0.604778) |
|
ese (0.506009) |
|
csp (0.483559) |
|
tes (0.415628) |
|
cty (0.31224) |
|
nbm (0.297974) |
|
cte (0.29274) |
|
hyp (0.285673) |
|
cga (0.279096) |
|
ute (0.265569) |
|
cov (0.264306) |
|
cly (0.241284) |
|
clu (0.239292) |
|
duo (0.172801) |
|
fco (0.157208) |
|
cli (0.152812) |
|
cbl (0.114797) |
