Non-Coding RNA Search

Ss1.1-LyN1-MLN01E080019.5

Sequence:


               
               ACCTGGCTCTCTCAGACCTGTTGGCAGGGGTGGCTTACATAGCCAACCTGCTCTTGTCTG
GAGCCACCACCTACAAGCTAACTCCCGCCCAGTGGTTTCTGCGGGAAGGGAGTATGTTTG
TGGCCCTGTCGGCCTCGGTGTTCAGCCTCCTCGCCATCGCCATCGAGCGCTACATCACCA
TGCTGAAGATGAAACTCCACAACGGGAGCAACCGGTTCCGCTCCTTTCTGCTCATCAGCG
CCTGTTGGGTCATCTCTCTCATCCTGGGGGGCTTGCCCATCATGGGCTGGAACTGCATCA
GCACGCTGCCCAGCTGCTCCACCGTGCTACCGCTCTACCACAAGCACTATATCCTCTTCT
GCACCACGGTCTTTACTCTGCTCCTGCTCGCCATCGTCATCCTGTATTGCAGGATCTACT
CCTTGGTCAGGACTCGGAGCCGCCGTCTGACCTTCCGCAAGAACATTTCCAAGGCCAGCC
GCAGCTCCGAGAAGTCCCTGGCGCTGCTCAAGACGGTGATTATCGTGCTGGGCGTCTTCA
TCGCCTGCTGGGCGCCGCTCTTCATCCTGCTCCTGCTGGACGTGGGCTGCAAGGTGAAGA
CCTGTGACATCCTCTTCCGAACGGAGTACTTCCTGGTGTTGGCTGTGCTCAACTCGGGCA
CCAACCCCATCATTTACACTTTGTCCAACAAGGAGATGCGCCGGGCCTTCGTCAGGATCA
TGTCCTGCTGCAAGTGTCCCAGTGGAGACTCCGCCGGCAAATTCACGCGACCCATCATCG
CTGGCATGGAGTTCAGCCGCAGTAAGTCAGATAACTCCTCCCACCCGCAGAAGGACGATG
GGGACAACCCAGAGACCATTATGTCTTCTGGAAACGTCAACTCTTCTTCCTAAAAGTGAA
ACCTGCCAACCCGTGTGGAGTGTTCTTGCGTTGGTCGCCAACCACCCAAGTGTTTGGAAA
AGAAAAAAAAAAAAAAAAATCTCTGTGCCTCCTGTGGCTGCCAGGAAGGAGCTGCCAGGA
GCCAGAGGGAGGGAGGCAGGGGGGCAAGAACAGCCTGGTGGTGCCTGACGTTGGTGGGTA
GACTTGGTTCCTGTGAACAATGCACTGGGAAGGGTGGAGATCAGGTCCTCGCCTGGAGTC
TATTTCCGCCCCCACCCCCTCTCCTGGGGCTTTGATTTTGCACTGAGCCAAAGGTCTAGC
ATTATCAAGCTCCGGAGGAGTTCATCTGGCCCCTCCTCAAAGACTGAGGACCCTGTGTGA
AAGCGTCTCTGTCTGGAGCTTTGAGGAGTTGTTTTCTCTCAGTTTAGTTGCCAACCCAGG
TGAGCGTGTGCACTTCTGCTTTGCTAGGTTGCTCTACAGATCCAACCCTCCTTCCCCCTT
CACACCCATCCTCAGCATCTCTTTACTTTATATGTTAACTACCTGGGATTCCGAGCTGGG
GGCGTGGCATGGTCCATTCTTGATCTTGTGTAGCAGGTGGGCTGTGCCCAGCAAGGAGAC
GCTGGTGGCGATGGTTTGGAGAGGTGAAACGATGTCACCTGCCGGGGCCAAAGCGTCCAC
GTAAGCTGGATGCATTCTTTTTTTCTTGAATCTGGTTGTTGTCACTTTCTTAGGAAAAAA
AAAAAAAGAAAAAAAAAAAACTTGGCAGTGAAACGTGTTACAGTATCATATCCGCCAGGC
TGAAATCTGCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCTGGCTCTCTCAGACCTGTTGGCAGGGGTGGCTTACATAGCCAACCTGCTCTTGTCTG
GAGCCACCACCTACAAGCTAACTCCCGCCCAGTGGTTTCTGCGGGAAGGGAGTATGTTTG
TGGCCCTGTCGGCCTCGGTGTTCAGCCTCCTCGCCATCGCCATCGAGCGCTACATCACCA
TGCTGAAGATGAAACTCCACAACGGGAGCAACCGGTTCCGCTCCTTTCTGCTCATCAGCG
CCTGTTGGGTCATCTCTCTCATCCTGGGGGGCTTGCCCATCATGGGCTGGAACTGCATCA
GCACGCTGCCCAGCTGCTCCACCGTGCTACCGCTCTACCACAAGCACTATATCCTCTTCT
GCACCACGGTCTTTACTCTGCTCCTGCTCGCCATCGTCATCCTGTATTGCAGGATCTACT
CCTTGGTCAGGACTCGGAGCCGCCGTCTGACCTTCCGCAAGAACATTTCCAAGGCCAGCC
GCAGCTCCGAGAAGTCCCTGGCGCTGCTCAAGACGGTGATTATCGTGCTGGGCGTCTTCA
TCGCCTGCTGGGCGCCGCTCTTCATCCTGCTCCTGCTGGACGTGGGCTGCAAGGTGAAGA
CCTGTGACATCCTCTTCCGAACGGAGTACTTCCTGGTGTTGGCTGTGCTCAACTCGGGCA
CCAACCCCATCATTTACACTTTGTCCAACAAGGAGATGCGCCGGGCCTTCGTCAGGATCA
TGTCCTGCTGCAAGTGTCCCAGTGGAGACTCCGCCGGCAAATTCACGCGACCCATCATCG
CTGGCATGGAGTTCAGCCGCAGTAAGTCAGATAACTCCTCCCACCCGCAGAAGGACGATG
GGGACAACCCAGAGACCATTATGTCTTCTGGAAACGTCAACTCTTCTTCCTAAAAGTGAA
ACCTGCCAACCCGTGTGGAGTGTTCTTGCGTTGGTCGCCAACCACCCAAGTGTTTGGAAA
AGAAAAAAAAAAAAAAAAATCTCTGTGCCTCCTGTGGCTGCCAGGAAGGAGCTGCCAGGA
GCCAGAGGGAGGGAGGCAGGGGGGCAAGAACAGCCTGGTGGTGCCTGACGTTGGTGGGTA
GACTTGGTTCCTGTGAACAATGCACTGGGAAGGGTGGAGATCAGGTCCTCGCCTGGAGTC
TATTTCCGCCCCCACCCCCTCTCCTGGGGCTTTGATTTTGCACTGAGCCAAAGGTCTAGC
ATTATCAAGCTCCGGAGGAGTTCATCTGGCCCCTCCTCAAAGACTGAGGACCCTGTGTGA
AAGCGTCTCTGTCTGGAGCTTTGAGGAGTTGTTTTCTCTCAGTTTAGTTGCCAACCCAGG
TGAGCGTGTGCACTTCTGCTTTGCTAGGTTGCTCTACAGATCCAACCCTCCTTCCCCCTT
CACACCCATCCTCAGCATCTCTTTACTTTATATGTTAACTACCTGGGATTCCGAGCTGGG
GGCGTGGCATGGTCCATTCTTGATCTTGTGTAGCAGGTGGGCTGTGCCCAGCAAGGAGAC
GCTGGTGGCGATGGTTTGGAGAGGTGAAACGATGTCACCTGCCGGGGCCAAAGCGTCCAC
GTAAGCTGGATGCATTCTTTTTTTCTTGAATCTGGTTGTTGTCACTTTCTTAGGAAAAAA
AAAAAAAGAAAAAAAAAAAACTTGGCAGTGAAACGTGTTACAGTATCATATCCGCCAGGC
TGAAATCTGCAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|60650268|gb|AAX31366.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|60650268|gb|AAX31366.1|

Predicted RNA structure(s): 5 entry(ies)

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Predicted RNA structure(s): 5 entry(ies)

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               3-121, - strand, RNAz p=0.998358
               

               
               202-441, - strand, RNAz p=0.847511
               

               
               762-917, - strand, RNAz p=0.769737
               

               
               958-1073, - strand, RNAz p=0.918303
               

               
               1114-1228, + strand, RNAz p=0.786847

Predicted RNA structure(s): 5 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-121, - strand, RNAz p=0.998358
               

               
               202-441, - strand, RNAz p=0.847511
               

               
               762-917, - strand, RNAz p=0.769737
               

               
               958-1073, - strand, RNAz p=0.918303
               

               
               1114-1228, + strand, RNAz p=0.786847

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC018650, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC018650, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1692, gnl|bosTau2|chr3 (34156603-34158286)
               

               
               3-1692, gnl|Hg17|chr1 (101416820-101418474)
               

               
               3-1692, gnl|Mm7|chr3 (115487598-115485990)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1692, gnl|bosTau2|chr3 (34156603-34158286)
               

               
               3-1692, gnl|Hg17|chr1 (101416820-101418474)
               

               
               3-1692, gnl|Mm7|chr3 (115487598-115485990)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               clu (0.717875)
               

               
               hyp (0.285673)
               

               
               bla (0.248694)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               cag (0.151194)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.717875)
               

               
               hyp (0.285673)
               

               
               bla (0.248694)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               cag (0.151194)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               cty (0.10408)

	3-121, - strand, RNAz p=0.998358
	202-441, - strand, RNAz p=0.847511
	762-917, - strand, RNAz p=0.769737
	958-1073, - strand, RNAz p=0.918303
	1114-1228, + strand, RNAz p=0.786847

	3-1692, gnl\|bosTau2\|chr3 (34156603-34158286)
	3-1692, gnl\|Hg17\|chr1 (101416820-101418474)
	3-1692, gnl\|Mm7\|chr3 (115487598-115485990)

	clu (0.717875)
	hyp (0.285673)
	bla (0.248694)
	sto (0.179824)
	ton (0.1755)
	rec (0.17307)
	cag (0.151194)
	ssp (0.13552)
	pla (0.133672)
	cly (0.120642)
	med (0.116252)
	cty (0.10408)