Ss1.1-LyN1-MLN01E080071.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCAGTCTGGGACGCGGATTGAGGCGAGTTTGTAAGGGACCAGTTTAGTATCAAAGGGCT TAGTAGCTCCAAATCACTCATTCAGAGAGCACCAAAGGACCAGGACAACACCATATTCCC GCTCAGTGTTTGGAGATCATCTATCCAGGCTGGGACTTCTGGGGGCAGGCAAGGACCCAG GGCCCCTGGAAGAGCGGGTCCAGGGGACCGGATGCCCTGTATCTCCCCGGAGCAGAGCAT GAGTGCCCTCCTGCAGCTGCTCCTGGGCCTCAGCCTGGGCTGCACCGGAGCAGGTGGCTT TGTGGCCCACGTGGAAAGCACCTGTCTGTTGGATGATGAGGGGACTCCACAGGATTTCAC GTATTGCATCTCCTTCAACAAGGACTTGCTGACCTGTTGGGATCCCCAGGAGACCCGTAT GGTCCCTTGTGAATTTGGAGCGCTGAATGCGTTGGCCACATATTTCTCTGTTTACCTCAA CCAGCAGGAAAAACTGCTCCAGCGCTTGTCCAATGGGCTCCAGAACTGTGCCACACACAC CCAACCCTTCTGGAAATCACTGACCCACAGGACACAGCCGCCGTCTGTGCAAGTGGCCAA AACCACTCCTTTTAACACGAGGGAGTCTGTGATGCTGGCCTGCTATGTGTGGGGCTTCTA TCCAGCTGATGTGATCATCACGTGGAGGAAGAATGGGCAGCCAGTCCTTCCTCATGGCAA GGCCCATATGATCACCCAGCCCAACGGAGACTGGACATACCAGACCGTCTCCCATTTGGC TACAACCCCCTCTTACGGGGACACCTACACCTGTGTGGTGGAGCACATTGGGGTTCCTGA GCCCATCCTTCAGGACTGGACTTCTGGGCTGTCCCCAGTGCAGACAGTGAAGATTTCTGT GTCTGTGGCGACTCTGGGCCTGGGCCTCATCATCTTCTCCCTTGGTTTGCTCAGCTGCCA GAGATCTGTTGCCCCAGGCTACATTTTCCTCCCGGGGACCACTTATCCAGAAGGTCAGCA CATTTCCTAGAGGCGGAGTCCTGCCACTTCCACTCCCTGTGAGAAGGCAATTTGGTCTCG TATGGATGCTGCTGTGCCCTTGGCTGACATCCTCAGACCCTCCACAGTTTCTTGGGTCCT CTGGTTTCTCTCTTCAGTTCTTTAAAATTTGCAGTTCCCCCTATGTAAACCTTAACCACT TGCGGGAACCATTCCTGGGAATATTCTGTGACCTAGTTATTGTACATAGCTGGAGCCCAA GGCTATGCACCTGAGGGGAATATCATTTGGGGAGGAAGGGCGAAGGCCCTCTTGGGGGTT CCCCTGTGCCACAGAGGGCAGTGAGTCGCCGGTAACCATCTCTGAGGAATAAACTCTGGT GGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCAGTCTGGGACGCGGATTGAGGCGAGTTTGTAAGGGACCAGTTTAGTATCAAAGGGCT TAGTAGCTCCAAATCACTCATTCAGAGAGCACCAAAGGACCAGGACAACACCATATTCCC GCTCAGTGTTTGGAGATCATCTATCCAGGCTGGGACTTCTGGGGGCAGGCAAGGACCCAG GGCCCCTGGAAGAGCGGGTCCAGGGGACCGGATGCCCTGTATCTCCCCGGAGCAGAGCAT GAGTGCCCTCCTGCAGCTGCTCCTGGGCCTCAGCCTGGGCTGCACCGGAGCAGGTGGCTT TGTGGCCCACGTGGAAAGCACCTGTCTGTTGGATGATGAGGGGACTCCACAGGATTTCAC GTATTGCATCTCCTTCAACAAGGACTTGCTGACCTGTTGGGATCCCCAGGAGACCCGTAT GGTCCCTTGTGAATTTGGAGCGCTGAATGCGTTGGCCACATATTTCTCTGTTTACCTCAA CCAGCAGGAAAAACTGCTCCAGCGCTTGTCCAATGGGCTCCAGAACTGTGCCACACACAC CCAACCCTTCTGGAAATCACTGACCCACAGGACACAGCCGCCGTCTGTGCAAGTGGCCAA AACCACTCCTTTTAACACGAGGGAGTCTGTGATGCTGGCCTGCTATGTGTGGGGCTTCTA TCCAGCTGATGTGATCATCACGTGGAGGAAGAATGGGCAGCCAGTCCTTCCTCATGGCAA GGCCCATATGATCACCCAGCCCAACGGAGACTGGACATACCAGACCGTCTCCCATTTGGC TACAACCCCCTCTTACGGGGACACCTACACCTGTGTGGTGGAGCACATTGGGGTTCCTGA GCCCATCCTTCAGGACTGGACTTCTGGGCTGTCCCCAGTGCAGACAGTGAAGATTTCTGT GTCTGTGGCGACTCTGGGCCTGGGCCTCATCATCTTCTCCCTTGGTTTGCTCAGCTGCCA GAGATCTGTTGCCCCAGGCTACATTTTCCTCCCGGGGACCACTTATCCAGAAGGTCAGCA CATTTCCTAGAGGCGGAGTCCTGCCACTTCCACTCCCTGTGAGAAGGCAATTTGGTCTCG TATGGATGCTGCTGTGCCCTTGGCTGACATCCTCAGACCCTCCACAGTTTCTTGGGTCCT CTGGTTTCTCTCTTCAGTTCTTTAAAATTTGCAGTTCCCCCTATGTAAACCTTAACCACT TGCGGGAACCATTCCTGGGAATATTCTGTGACCTAGTTATTGTACATAGCTGGAGCCCAA GGCTATGCACCTGAGGGGAATATCATTTGGGGAGGAAGGGCGAAGGCCCTCTTGGGGGTT CCCCTGTGCCACAGAGGGCAGTGAGTCGCCGGTAACCATCTCTGAGGAATAAACTCTGGT GGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 657-860, - strand, RNAz p=0.95793 | |
| 679-798, + strand, RNAz p=0.579888 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 657-860, - strand, RNAz p=0.95793 | |
| 679-798, + strand, RNAz p=0.579888 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 291-575, gnl|bosTau2|chr23 (5699964-5700248) | |
| 291-575, gnl|canFam2|chr12 (5510499-5511007) | |
| 291-575, gnl|dasNov1|scaffold_27518 (3464-3971) | |
| 291-575, gnl|echTel1|scaffold_176393 (3497-3943) | |
| 291-575, gnl|hg17|chr6 (33014264-33014766) | |
| 291-575, gnl|Hg17|chr6 (33014723-33014439) | |
| 291-575, gnl|mm7|chr17 (32228367-32227896) | |
| 291-575, gnl|Mm7|chr17 (32227937-32228224) | |
| 291-575, gnl|monDom2|scaffold_42 (15538648-15538153) | |
| 291-575, gnl|panTro1|chr5 (33454996-33455498) | |
| 291-575, gnl|rheMac2|chr4 (32645169-32645671) | |
| 291-575, gnl|rn3|chr20 (4834102-4834564) | |
| 578-860, gnl|bosTau2|chr23 (5702079-5702361) | |
| 578-860, gnl|canFam2|chr12 (5508884-5509244) | |
| 578-860, gnl|dasNov1|scaffold_27518 (1991-2385) | |
| 578-860, gnl|echTel1|scaffold_176393 (1395-1758) | |
| 578-860, gnl|hg17|chr6 (33012885-33013247) | |
| 578-860, gnl|Hg17|chr6 (33013209-33012927) | |
| 578-860, gnl|loxAfr1|scaffold_112174 (807-1192) | |
| 578-860, gnl|mm7|chr17 (32229189-32228809) | |
| 578-860, gnl|Mm7|chr17 (32228845-32229127) | |
| 578-860, gnl|monDom2|scaffold_42 (15540160-15539786) | |
| 578-860, gnl|panTro1|chr5 (33453617-33453979) | |
| 578-860, gnl|rheMac2|chr4 (32643846-32644207) | |
| 578-860, gnl|rn3|chr20 (4832340-4832720) | |
| 1179-1375, gnl|bosTau2|chr23 (5704921-5705121) | |
| 1179-1375, gnl|canFam2|chr12 (5506350-5506668) | |
| 1179-1375, gnl|hg17|chr6 (33010269-33010584) | |
| 1179-1375, gnl|Hg17|chr6 (33010578-33010399) | |
| 1179-1375, gnl|mm7|chr17 (32231929-32231672) | |
| 1179-1375, gnl|oryCun1|scaffold_157078 (1736-1424) | |
| 1179-1375, gnl|panTro1|chr5 (33450905-33451219) | |
| 1179-1375, gnl|rheMac2|chr4 (32641247-32641564) | |
| 1179-1375, gnl|rn3|chr20 (4829655-4829935) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 291-575, gnl|bosTau2|chr23 (5699964-5700248) | |
| 291-575, gnl|canFam2|chr12 (5510499-5511007) | |
| 291-575, gnl|dasNov1|scaffold_27518 (3464-3971) | |
| 291-575, gnl|echTel1|scaffold_176393 (3497-3943) | |
| 291-575, gnl|hg17|chr6 (33014264-33014766) | |
| 291-575, gnl|Hg17|chr6 (33014723-33014439) | |
| 291-575, gnl|mm7|chr17 (32228367-32227896) | |
| 291-575, gnl|Mm7|chr17 (32227937-32228224) | |
| 291-575, gnl|monDom2|scaffold_42 (15538648-15538153) | |
| 291-575, gnl|panTro1|chr5 (33454996-33455498) | |
| 291-575, gnl|rheMac2|chr4 (32645169-32645671) | |
| 291-575, gnl|rn3|chr20 (4834102-4834564) | |
| 578-860, gnl|bosTau2|chr23 (5702079-5702361) | |
| 578-860, gnl|canFam2|chr12 (5508884-5509244) | |
| 578-860, gnl|dasNov1|scaffold_27518 (1991-2385) | |
| 578-860, gnl|echTel1|scaffold_176393 (1395-1758) | |
| 578-860, gnl|hg17|chr6 (33012885-33013247) | |
| 578-860, gnl|Hg17|chr6 (33013209-33012927) | |
| 578-860, gnl|loxAfr1|scaffold_112174 (807-1192) | |
| 578-860, gnl|mm7|chr17 (32229189-32228809) | |
| 578-860, gnl|Mm7|chr17 (32228845-32229127) | |
| 578-860, gnl|monDom2|scaffold_42 (15540160-15539786) | |
| 578-860, gnl|panTro1|chr5 (33453617-33453979) | |
| 578-860, gnl|rheMac2|chr4 (32643846-32644207) | |
| 578-860, gnl|rn3|chr20 (4832340-4832720) | |
| 1179-1375, gnl|bosTau2|chr23 (5704921-5705121) | |
| 1179-1375, gnl|canFam2|chr12 (5506350-5506668) | |
| 1179-1375, gnl|hg17|chr6 (33010269-33010584) | |
| 1179-1375, gnl|Hg17|chr6 (33010578-33010399) | |
| 1179-1375, gnl|mm7|chr17 (32231929-32231672) | |
| 1179-1375, gnl|oryCun1|scaffold_157078 (1736-1424) | |
| 1179-1375, gnl|panTro1|chr5 (33450905-33451219) | |
| 1179-1375, gnl|rheMac2|chr4 (32641247-32641564) | |
| 1179-1375, gnl|rn3|chr20 (4829655-4829935) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| clu (1.43575) | |
| cly (1.08578) | |
| cty (0.72856) | |
| ill (0.702371) | |
| csp (0.644745) | |
| jca (0.34188) | |
| jej (0.197844) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| cag (0.151194) | |
| hyp (0.142837) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (1.43575) | |
| cly (1.08578) | |
| cty (0.72856) | |
| ill (0.702371) | |
| csp (0.644745) | |
| jca (0.34188) | |
| jej (0.197844) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| cag (0.151194) | |
| hyp (0.142837) |