Non-Coding RNA Search

Ss1.1-LyN1-MLN01E090012.5

Sequence:


               
               GAAAGGAAGCTTGAAGTCAAGATGGAGGATAGTAGTTTCTCTGCGGCTGCTGCTGCTGTG
CGGAACGGGGACTTGGGGTCCCAGTGGGACCGGAGCTTGGTGCCCGAGCGGCTTCAGAGG
CGAGAACAAGAGCGGCAACTGGAGGTGGAAAGGCGGAAGCAAAAGCGGCAGAACGAGGAG
GTGGAGGAGGAAAAGAGCGACTTTTTCGCCGCCGCCTTCGCTCGGGAGCGATCGGCCGTG
GAAGAGCTTCTGGAAGGCGGGGAGTCCGTCGAGAAGCTGGAGGAGGCGGCCGCTCGGCTA
CAGGGGCTGCAGAAACTTATCAACGATTCGGTTTTGTTCCTGGCCGCCTACGATCTGCGG
CAGGGACAAGAGGTGCTGGCGCGGCTGCAGGCGGCCCTGGCCAAGCGGCGTCAGGAGCTG
CAGCCTAAGAAGCGTTTCGCTTTCAAGACTCGCAGGAAGGATGTCGCTTCAGCCACCAAA
GTAGACTCGGCTCCCGGCGCCCCGGCTGCTGACGCCATCCTGGCCTCCTCTCCGCCCTTG
AAGGAGGAGGGAGGCTTCGACTCCAGCTGGGTCTGCGGCTTCTCCAACCTGCAGTCCGAA
GTCTTGGAGAAGAGAGCCGACGAGCTGCACCAGCGCGACGTCCTTTTGACCCAACTGAGT
AATTGCACGATCAAATTGTATGGCAATCCCAATACTCTGCGGCTAACCAAGGCCCGAGGC
TGCACGCTGCTCTGCGGTCCCGTGTCCACCTCTGTGTTCCTGGAGGACTGCAGTGACTGC
GTGCTGGCTGTGGCCTGCCAGCAGCTCCGCGTACACACCACAAAAGACACCCGCGTCTTC
CTGCTGGTGACCAGCAGGGCCATCGTGGAGGACTGCACGGGGATCCAGTTCGCCCCCTAC
ACCTGGAGCTACCCGGGGATCGACAAGGACTTTGAGGGCTCTGGTTTAGATAGGAGCAAA
AATAACTGGAACGACGTTGACGATTTCAACTGGCTGGCCCGGGATGTGGCCTCCCCAAAC
TGGAGCATTCTTCCGGAAGAAGAGCGAAGGATCCAGTGGGACTAAAGCAGTTGTCACGCT
TTTCTTCACTCCTACTCCTTCCCATGTGGGACTGATTCCGGCTAATGGGACTGCAAAGTG
TATCTATTGTTTTCACGCCGTATATGTTTTCATTATTTTAAGACGAGATTGTGATAAGCT
GCTACATTTGATCTACATTAAATTTGTGACAGGTCTGGCACTTTAAAGAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAGGAAGCTTGAAGTCAAGATGGAGGATAGTAGTTTCTCTGCGGCTGCTGCTGCTGTG
CGGAACGGGGACTTGGGGTCCCAGTGGGACCGGAGCTTGGTGCCCGAGCGGCTTCAGAGG
CGAGAACAAGAGCGGCAACTGGAGGTGGAAAGGCGGAAGCAAAAGCGGCAGAACGAGGAG
GTGGAGGAGGAAAAGAGCGACTTTTTCGCCGCCGCCTTCGCTCGGGAGCGATCGGCCGTG
GAAGAGCTTCTGGAAGGCGGGGAGTCCGTCGAGAAGCTGGAGGAGGCGGCCGCTCGGCTA
CAGGGGCTGCAGAAACTTATCAACGATTCGGTTTTGTTCCTGGCCGCCTACGATCTGCGG
CAGGGACAAGAGGTGCTGGCGCGGCTGCAGGCGGCCCTGGCCAAGCGGCGTCAGGAGCTG
CAGCCTAAGAAGCGTTTCGCTTTCAAGACTCGCAGGAAGGATGTCGCTTCAGCCACCAAA
GTAGACTCGGCTCCCGGCGCCCCGGCTGCTGACGCCATCCTGGCCTCCTCTCCGCCCTTG
AAGGAGGAGGGAGGCTTCGACTCCAGCTGGGTCTGCGGCTTCTCCAACCTGCAGTCCGAA
GTCTTGGAGAAGAGAGCCGACGAGCTGCACCAGCGCGACGTCCTTTTGACCCAACTGAGT
AATTGCACGATCAAATTGTATGGCAATCCCAATACTCTGCGGCTAACCAAGGCCCGAGGC
TGCACGCTGCTCTGCGGTCCCGTGTCCACCTCTGTGTTCCTGGAGGACTGCAGTGACTGC
GTGCTGGCTGTGGCCTGCCAGCAGCTCCGCGTACACACCACAAAAGACACCCGCGTCTTC
CTGCTGGTGACCAGCAGGGCCATCGTGGAGGACTGCACGGGGATCCAGTTCGCCCCCTAC
ACCTGGAGCTACCCGGGGATCGACAAGGACTTTGAGGGCTCTGGTTTAGATAGGAGCAAA
AATAACTGGAACGACGTTGACGATTTCAACTGGCTGGCCCGGGATGTGGCCTCCCCAAAC
TGGAGCATTCTTCCGGAAGAAGAGCGAAGGATCCAGTGGGACTAAAGCAGTTGTCACGCT
TTTCTTCACTCCTACTCCTTCCCATGTGGGACTGATTCCGGCTAATGGGACTGCAAAGTG
TATCTATTGTTTTCACGCCGTATATGTTTTCATTATTTTAAGACGAGATTGTGATAAGCT
GCTACATTTGATCTACATTAAATTTGTGACAGGTCTGGCACTTTAAAGAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5R5J7_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5R5J7_PONPY

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               161-280, - strand, RNAz p=0.685841
               

               
               958-1077, + strand, RNAz p=0.66395

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               161-280, - strand, RNAz p=0.685841
               

               
               958-1077, + strand, RNAz p=0.66395

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1250, gnl|bosTau2|chr23 (17079892-17078669)
               

               
               1-1250, gnl|Hg17|chr6 (42821810-42820566)
               

               
               1-1250, gnl|Mm7|chr17 (45021160-45022335)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1250, gnl|bosTau2|chr23 (17079892-17078669)
               

               
               1-1250, gnl|Hg17|chr6 (42821810-42820566)
               

               
               1-1250, gnl|Mm7|chr17 (45021160-45022335)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               elu (0.385356)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	161-280, - strand, RNAz p=0.685841
	958-1077, + strand, RNAz p=0.66395

	1-1250, gnl\|bosTau2\|chr23 (17079892-17078669)
	1-1250, gnl\|Hg17\|chr6 (42821810-42820566)
	1-1250, gnl\|Mm7\|chr17 (45021160-45022335)

	elu (0.385356)
	nms (0.213858)
	hea (0.204499)
	nlu (0.191681)
	nep (0.183925)
	fbs (0.175346)
	nco (0.161734)
	cag (0.151194)
	hyp (0.142837)
	eep (0.122564)
	ebs (0.118301)
	cty (0.10408)
	eje (0.0988338)