Ss1.1-LyN1-MLN01E090071.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCCGCGCCGGCCTCGCACTGCCTCTCGCGGCGCTCGTCCGGGCTCGTGGGGGATCCC GCGTTCCGCACAGCGCCGCGGCGGCCCGGCCAATGGCACCTCAGCGGAGGGGCGCGCCCA AGGGGCCCGAGGGCTGCGGGGCGGCGGAGCGCGGGCGCCCGAACAGCACCAAGGGTGTCC GGGCACCGCGGGATGTGCGGAGGAAGTGGCTGCGAGTCGCCGTCCTGGGGGCCTGCACCA CGCTGGCGGGGCTCCTGCTGTGGGGCCGCCTGGGGGCTGATAAGGATGGCATCGCCGAGG TGCTTGCTGGCCGCAGCGAGGTCCTGCCGGGCAGGTTCATCGAGGTGCCCTGCTCCGAGG ACTATGACAGTCAGCGCAGGTTTGAAGGCTGCACCCCGAGGAAGTGTGGCCGGGGCGTCA GCGATGCCGTCATCACCAGGGACGAGGCCCGGAGGATTCGCAGCATAGCCGAGAAGGGGC TTTCTCTGGGCGGATCCGACGGAGGGGCCTCCATCCTGGACCTGCACTCGGGGGCCCTGT CTGTCGGGAAGCACTTTGTGAACCTGTACAGGTACTTTGGGGATAAAATCCAAAATATCT TCTCGGAAGAGGACTTCCGGTTGTACCGGAACGTGCGGCAGAAGGTCCAGCTGGCGATCG CCCAGGCGTTTGGCATCAGCGCGTCCTCGCTGCACCTGACCAAGCCCACCTTCTTCTCCC GCATCAACAGCACGGCGGCCCGGACGGCGCACGACGAGTACTGGCACGCACACGTGGACA AGGTGACCTACGGCTCCTTCGACTACACCTCGCTGCTCTACCTCTCTGACTACCAGGATG ACTTCGGCGGGGGGCGGTTTGTGTTCATGGAGGAAGGGGCCAACAGGACGGTGGAGCCCA GAGCAGGCCGCGTGTCCTTCTTCACCTCGGGGTCTGAGAACCTGCACCGGGTGGAGAAGG TTCACTGGGGCACCCGCTACGCCGTCACCATCGCCTTCACCTGCAATCCCGACCACGGCA TCGCGGACCCGGCGCTCACGCCGCCCGGGGGCCCGTCCGCCCAGCCCCGCTGAGCCCCCA CTTGGCCGGTTCCACTCAACAAGGTGCCTTATGAACCCTCCTGAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAGGGGGGGGCCTTTTTAAAA ATTTTCTTGGGGGGGCCAAAATTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCCGCGCCGGCCTCGCACTGCCTCTCGCGGCGCTCGTCCGGGCTCGTGGGGGATCCC GCGTTCCGCACAGCGCCGCGGCGGCCCGGCCAATGGCACCTCAGCGGAGGGGCGCGCCCA AGGGGCCCGAGGGCTGCGGGGCGGCGGAGCGCGGGCGCCCGAACAGCACCAAGGGTGTCC GGGCACCGCGGGATGTGCGGAGGAAGTGGCTGCGAGTCGCCGTCCTGGGGGCCTGCACCA CGCTGGCGGGGCTCCTGCTGTGGGGCCGCCTGGGGGCTGATAAGGATGGCATCGCCGAGG TGCTTGCTGGCCGCAGCGAGGTCCTGCCGGGCAGGTTCATCGAGGTGCCCTGCTCCGAGG ACTATGACAGTCAGCGCAGGTTTGAAGGCTGCACCCCGAGGAAGTGTGGCCGGGGCGTCA GCGATGCCGTCATCACCAGGGACGAGGCCCGGAGGATTCGCAGCATAGCCGAGAAGGGGC TTTCTCTGGGCGGATCCGACGGAGGGGCCTCCATCCTGGACCTGCACTCGGGGGCCCTGT CTGTCGGGAAGCACTTTGTGAACCTGTACAGGTACTTTGGGGATAAAATCCAAAATATCT TCTCGGAAGAGGACTTCCGGTTGTACCGGAACGTGCGGCAGAAGGTCCAGCTGGCGATCG CCCAGGCGTTTGGCATCAGCGCGTCCTCGCTGCACCTGACCAAGCCCACCTTCTTCTCCC GCATCAACAGCACGGCGGCCCGGACGGCGCACGACGAGTACTGGCACGCACACGTGGACA AGGTGACCTACGGCTCCTTCGACTACACCTCGCTGCTCTACCTCTCTGACTACCAGGATG ACTTCGGCGGGGGGCGGTTTGTGTTCATGGAGGAAGGGGCCAACAGGACGGTGGAGCCCA GAGCAGGCCGCGTGTCCTTCTTCACCTCGGGGTCTGAGAACCTGCACCGGGTGGAGAAGG TTCACTGGGGCACCCGCTACGCCGTCACCATCGCCTTCACCTGCAATCCCGACCACGGCA TCGCGGACCCGGCGCTCACGCCGCCCGGGGGCCCGTCCGCCCAGCCCCGCTGAGCCCCCA CTTGGCCGGTTCCACTCAACAAGGTGCCTTATGAACCCTCCTGAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAGGGGGGGGCCTTTTTAAAA ATTTTCTTGGGGGGGCCAAAATTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 164-388, gnl|bosTau2|chr19 (47517786-47518007) | |
| 164-388, gnl|canFam2|chrUn (11724726-11724996) | |
| 164-388, gnl|dasNov1|scaffold_244643 (1081-1318) | |
| 164-388, gnl|hg17|chr17 (77966558-77966840) | |
| 164-388, gnl|Hg17|chr17 (77966795-77966562) | |
| 164-388, gnl|loxAfr1|scaffold_41572 (1607-1844) | |
| 164-388, gnl|mm7|chr11 (121311931-121312193) | |
| 164-388, gnl|Mm7|chr11 (121312156-121311935) | |
| 164-388, gnl|panTro1|chr19 (81744336-81744618) | |
| 164-388, gnl|rheMac2|chr16 (77896147-77896450) | |
| 164-388, gnl|rn3|chr10 (110449966-110450202) | |
| 628-786, gnl|bosTau2|chr19 (47525135-47525293) | |
| 628-786, gnl|canFam2|chrUn (11712767-11712928) | |
| 628-786, gnl|danRer3|chr12 (25176448-25176281) | |
| 628-786, gnl|dasNov1|scaffold_279707 (5-146) | |
| 628-786, gnl|echTel1|scaffold_264711 (5280-5116) | |
| 628-786, gnl|fr1|chrUn (276938438-276938297) | |
| 628-786, gnl|hg17|chr17 (77955098-77955260) | |
| 628-786, gnl|Hg17|chr17 (77955256-77955098) | |
| 628-786, gnl|loxAfr1|scaffold_33402 (14628-14790) | |
| 628-786, gnl|mm7|chr11 (121304121-121304283) | |
| 628-786, gnl|Mm7|chr11 (121304279-121304121) | |
| 628-786, gnl|oryCun1|scaffold_119494 (529-367) | |
| 628-786, gnl|panTro1|chr19 (81732938-81733100) | |
| 628-786, gnl|rheMac2|chr16 (77884830-77884992) | |
| 628-786, gnl|rn3|chr10 (110441874-110442036) | |
| 628-786, gnl|tetNig1|chrUn_random (23152644-23152503) | |
| 628-786, gnl|xenTro1|scaffold_135 (993467-993628) | |
| 904-1072, gnl|bosTau2|chr19 (47529554-47529723) | |
| 904-1072, gnl|Hg17|chr17 (77943702-77943527) | |
| 904-1072, gnl|Mm7|chr11 (121286986-121286814) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 164-388, gnl|bosTau2|chr19 (47517786-47518007) | |
| 164-388, gnl|canFam2|chrUn (11724726-11724996) | |
| 164-388, gnl|dasNov1|scaffold_244643 (1081-1318) | |
| 164-388, gnl|hg17|chr17 (77966558-77966840) | |
| 164-388, gnl|Hg17|chr17 (77966795-77966562) | |
| 164-388, gnl|loxAfr1|scaffold_41572 (1607-1844) | |
| 164-388, gnl|mm7|chr11 (121311931-121312193) | |
| 164-388, gnl|Mm7|chr11 (121312156-121311935) | |
| 164-388, gnl|panTro1|chr19 (81744336-81744618) | |
| 164-388, gnl|rheMac2|chr16 (77896147-77896450) | |
| 164-388, gnl|rn3|chr10 (110449966-110450202) | |
| 628-786, gnl|bosTau2|chr19 (47525135-47525293) | |
| 628-786, gnl|canFam2|chrUn (11712767-11712928) | |
| 628-786, gnl|danRer3|chr12 (25176448-25176281) | |
| 628-786, gnl|dasNov1|scaffold_279707 (5-146) | |
| 628-786, gnl|echTel1|scaffold_264711 (5280-5116) | |
| 628-786, gnl|fr1|chrUn (276938438-276938297) | |
| 628-786, gnl|hg17|chr17 (77955098-77955260) | |
| 628-786, gnl|Hg17|chr17 (77955256-77955098) | |
| 628-786, gnl|loxAfr1|scaffold_33402 (14628-14790) | |
| 628-786, gnl|mm7|chr11 (121304121-121304283) | |
| 628-786, gnl|Mm7|chr11 (121304279-121304121) | |
| 628-786, gnl|oryCun1|scaffold_119494 (529-367) | |
| 628-786, gnl|panTro1|chr19 (81732938-81733100) | |
| 628-786, gnl|rheMac2|chr16 (77884830-77884992) | |
| 628-786, gnl|rn3|chr10 (110441874-110442036) | |
| 628-786, gnl|tetNig1|chrUn_random (23152644-23152503) | |
| 628-786, gnl|xenTro1|scaffold_135 (993467-993628) | |
| 904-1072, gnl|bosTau2|chr19 (47529554-47529723) | |
| 904-1072, gnl|Hg17|chr17 (77943702-77943527) | |
| 904-1072, gnl|Mm7|chr11 (121286986-121286814) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| ute (0.265569) | |
| cov (0.264306) | |
| eep (0.245128) | |
| fli (0.202881) | |
| fbs (0.175346) | |
| nco (0.161734) | |
| jca (0.11396) | |
| jej (0.0989218) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ute (0.265569) | |
| cov (0.264306) | |
| eep (0.245128) | |
| fli (0.202881) | |
| fbs (0.175346) | |
| nco (0.161734) | |
| jca (0.11396) | |
| jej (0.0989218) |