Ss1.1-LyN1-MLN01E090073.5
|
CGTCCTCCCGCACTCGGAGCGGCGGAAAGGCGCGCGCGCGCGCGCGGCAGCGGCGGCGAC
GGCGGCGACGACAGCAGCCCCAGCTGAACCGGGACGGCAGCGGAAAGGTGACGTACAAAG
CAACGTGAGTGAGGCGTGAGGACGACAACCGCGCCCGGGAAGCCCCGCCGGGCTCGAACC
GCGGCGGACCGGACCCAGGTCCGGCTTCCGAGGCTCCGCCTCTCGCGTTTTGGGACTAAT
CGGATTGAGAGCGCGCCGGCCCGGGCCGCGAACTCGCCAATTGCGGAGGGCATCGACCAC
TACCCAATCCGGAGCAGACAGGTGCGAGGTCCGGAAGGCGGAGACCAATCAGCAGCGGTT
GCGGCCTGTTGGGGCCGGCCTCGGCCAATGACAAGGCCCGAGTGACGTCTTCGCGCACCA
ATCAGGAGTGAAGGAGCCTTCGTGCCCGCCCGCCCTTCCGGCCTGAGCTCTATTTACCAG
GGGCGTGCTGCCGGCTTGCCAATCAGAGCGCAGCTAAGCGGCCAGGCAGCCAACCCGGGA
GGAGCGGCCGGCCGGCGTCTGCCGCACCCAGGAGTTGGGGATGTCCTACAAACCCATCGC
CCCCGCCCCCAGCAGCACCCCGGGCTCCAGCACCCCTGGGCCCGGCACCCCGGTCCCTAC
AGCTGGAAGTGTCCCATCGCCGTCGGGCTCGGTGCCGGGAGCTGCTGCTCCTTTCAGACC
TCTGTTTAACGACTTTGGACCGCCCTCCATGGGCTATGTGCAGGCAATGAAACCACCTGG
CGCCCAGGGCTCCCAGAGCACTTACACGGACCTGCTGTCGGTCATAGAGGAGATGGGCAA
AGAGATCCGACCCACCTATGCTGGCAGCAAGAGTGCCATGGAGCGCCTGAAGAGAGGCAT
CATCCATGCCCGGGCCCTAGTCAGAGAGTGCCTGGCAGAGACAGAGCGGAACGCCCGCAC
GTAACAGGACTCGACTCCTCCTCGGCGTCTGGACCTTTCCTGGCCACTGCAGAGCACCTG
CTTCTCCCTGGCCTTCACCCCGAGTTGCACTTCCCATCCTGGGCTTCCTGTCCTGTGTCC
TTTGGTGGGTGCCCTCCAGGAACCAGTGGGCGGCTCTCACTCCAGTCGGCAGCAGTAACT
GGAACCCCCAAAAGAGGGAGCAGTGAGGTCCCTGGGAGTCCCACCCATGACCTGCCAACA
GTGTTGATCCAGCTGGGGCTTTCTCCTTTCTGTGGCCCCACCGCTCAGCACTTACCCAGG
ACTTACCGTTTTCCCAGACCCCTTCTCCCCCCAGCAGAGCCTCAGAAGGCCTGTCGCCTC
CCTGCCTCGTCTCCTAGGCCATAACTCTTTTCTCGGTGTGTCTTTTGCTAAATATGCCCT
TTTTGTATAAATAAAAGATAATTTGGAGTTGTTCTC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CGTCCTCCCGCACTCGGAGCGGCGGAAAGGCGCGCGCGCGCGCGCGGCAGCGGCGGCGAC
GGCGGCGACGACAGCAGCCCCAGCTGAACCGGGACGGCAGCGGAAAGGTGACGTACAAAG
CAACGTGAGTGAGGCGTGAGGACGACAACCGCGCCCGGGAAGCCCCGCCGGGCTCGAACC
GCGGCGGACCGGACCCAGGTCCGGCTTCCGAGGCTCCGCCTCTCGCGTTTTGGGACTAAT
CGGATTGAGAGCGCGCCGGCCCGGGCCGCGAACTCGCCAATTGCGGAGGGCATCGACCAC
TACCCAATCCGGAGCAGACAGGTGCGAGGTCCGGAAGGCGGAGACCAATCAGCAGCGGTT
GCGGCCTGTTGGGGCCGGCCTCGGCCAATGACAAGGCCCGAGTGACGTCTTCGCGCACCA
ATCAGGAGTGAAGGAGCCTTCGTGCCCGCCCGCCCTTCCGGCCTGAGCTCTATTTACCAG
GGGCGTGCTGCCGGCTTGCCAATCAGAGCGCAGCTAAGCGGCCAGGCAGCCAACCCGGGA
GGAGCGGCCGGCCGGCGTCTGCCGCACCCAGGAGTTGGGGATGTCCTACAAACCCATCGC
CCCCGCCCCCAGCAGCACCCCGGGCTCCAGCACCCCTGGGCCCGGCACCCCGGTCCCTAC
AGCTGGAAGTGTCCCATCGCCGTCGGGCTCGGTGCCGGGAGCTGCTGCTCCTTTCAGACC
TCTGTTTAACGACTTTGGACCGCCCTCCATGGGCTATGTGCAGGCAATGAAACCACCTGG
CGCCCAGGGCTCCCAGAGCACTTACACGGACCTGCTGTCGGTCATAGAGGAGATGGGCAA
AGAGATCCGACCCACCTATGCTGGCAGCAAGAGTGCCATGGAGCGCCTGAAGAGAGGCAT
CATCCATGCCCGGGCCCTAGTCAGAGAGTGCCTGGCAGAGACAGAGCGGAACGCCCGCAC
GTAACAGGACTCGACTCCTCCTCGGCGTCTGGACCTTTCCTGGCCACTGCAGAGCACCTG
CTTCTCCCTGGCCTTCACCCCGAGTTGCACTTCCCATCCTGGGCTTCCTGTCCTGTGTCC
TTTGGTGGGTGCCCTCCAGGAACCAGTGGGCGGCTCTCACTCCAGTCGGCAGCAGTAACT
GGAACCCCCAAAAGAGGGAGCAGTGAGGTCCCTGGGAGTCCCACCCATGACCTGCCAACA
GTGTTGATCCAGCTGGGGCTTTCTCCTTTCTGTGGCCCCACCGCTCAGCACTTACCCAGG
ACTTACCGTTTTCCCAGACCCCTTCTCCCCCCAGCAGAGCCTCAGAAGGCCTGTCGCCTC
CCTGCCTCGTCTCCTAGGCCATAACTCTTTTCTCGGTGTGTCTTTTGCTAAATATGCCCT
TTTTGTATAAATAAAAGATAATTTGGAGTTGTTCTC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
660-764, gnl|bosTau2|chr29 (39672732-39672836) |
|
660-764, gnl|Hg17|chr11 (67031742-67031638) |
|
660-764, gnl|Mm7|chr19 (3992620-3992724) |
| |
|
895-1416, gnl|bosTau2|chr29 (39673560-39674091) |
|
895-1416, gnl|canFam2|chr18 (52997879-52997527) |
|
895-1416, gnl|dasNov1|scaffold_33821 (9666-10018) |
|
895-1416, gnl|echTel1|scaffold_283554 (42738-42397) |
|
895-1416, gnl|hg17|chr11 (67030532-67030871) |
|
895-1416, gnl|Hg17|chr11 (67031061-67030547) |
|
895-1416, gnl|loxAfr1|scaffold_91219 (5301-4948) |
|
895-1416, gnl|mm7|chr19 (3993832-3993494) |
|
895-1416, gnl|Mm7|chr19 (3993302-3993822) |
|
895-1416, gnl|monDom2|scaffold_226 (702719-702378) |
|
895-1416, gnl|panTro1|chr6 (10945851-10945511) |
|
895-1416, gnl|rheMac2|chr14 (6950424-6950079) |
|
895-1416, gnl|rn3|chr1 (206836566-206836225) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
660-764, gnl|bosTau2|chr29 (39672732-39672836) |
|
660-764, gnl|Hg17|chr11 (67031742-67031638) |
|
660-764, gnl|Mm7|chr19 (3992620-3992724) |
| |
|
895-1416, gnl|bosTau2|chr29 (39673560-39674091) |
|
895-1416, gnl|canFam2|chr18 (52997879-52997527) |
|
895-1416, gnl|dasNov1|scaffold_33821 (9666-10018) |
|
895-1416, gnl|echTel1|scaffold_283554 (42738-42397) |
|
895-1416, gnl|hg17|chr11 (67030532-67030871) |
|
895-1416, gnl|Hg17|chr11 (67031061-67030547) |
|
895-1416, gnl|loxAfr1|scaffold_91219 (5301-4948) |
|
895-1416, gnl|mm7|chr19 (3993832-3993494) |
|
895-1416, gnl|Mm7|chr19 (3993302-3993822) |
|
895-1416, gnl|monDom2|scaffold_226 (702719-702378) |
|
895-1416, gnl|panTro1|chr6 (10945851-10945511) |
|
895-1416, gnl|rheMac2|chr14 (6950424-6950079) |
|
895-1416, gnl|rn3|chr1 (206836566-206836225) |
|
cly (0.361925) |
|
cag (0.302389) |
|
cga (0.279096) |
|
med (0.232504) |
|
nlu (0.191681) |
|
fty (0.17584) |
|
ill (0.175593) |
|
mcp (0.170648) |
|
nco (0.161734) |
|
csp (0.161186) |
|
cli (0.152812) |
|
pty (0.142714) |
|
che (0.136314) |
|
ute (0.132784) |
|
ese (0.126502) |
|
eru (0.120048) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
jej (0.0989218) |
|
ldo (0.0970026) |
|
cly (0.361925) |
|
cag (0.302389) |
|
cga (0.279096) |
|
med (0.232504) |
|
nlu (0.191681) |
|
fty (0.17584) |
|
ill (0.175593) |
|
mcp (0.170648) |
|
nco (0.161734) |
|
csp (0.161186) |
|
cli (0.152812) |
|
pty (0.142714) |
|
che (0.136314) |
|
ute (0.132784) |
|
ese (0.126502) |
|
eru (0.120048) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
jej (0.0989218) |
|
ldo (0.0970026) |
