Ss1.1-LyN1-MLN01E090098.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTCCTGCAGGTGTGCAACCAGCTGGAGGCACTGGTGGGTCCAGCAGCCAACATGGGACC CTATGGTTCCGGAGACAGCGCACCCCTCAAAGAGGCGATGGCCGTGCTCCAGCACCACGA TGCGGTCAGCGGCACCTCGCGGCAGCATGTGGCCAACGACTACGCACGCCAGCTGGCCGA AAGCTGGGGGCCTTGCGAGGTTCTCCTGAGCAATGCGCTGGCGCAGCTCAGCGGCTCCAA GAAGGATTTCGTGTTCTGCCACAAGCTCAACATCAGTGTCTGTCCCCTCACCCAGAACGC GGAGAAATTCCAGGTGACCATTTATAACCCCCTGGGGCGGAAAGTGGATTGGATGGTGCG GCTGCCTGTCAGCGAACACGTTTACCTTGTGAAAGATCCCAATGGCACAGTTGTGCCCAG CGATGTGGTGACAGTTCCCAGCTCAGACAGTCAGGACCTGCTTTTCTCAGCCTCAGTGCC TGCCCTCGGCTTCAGCATCTACTCAGTAACTCGGGTGCCTGGCCAAAGTCCCCAGGCCTA TGACCGCCATCCCAGATCCCAGAAGCCCTGGTCCCGTGTCTTGGTCATCCAGAATGAGCA CATCCGGGCTAGGTTTAATCCTGACACAGGGCTCTTAATGGAGATTGAGAACCTGGATGA GAACCTCCTGCTGCCTGTTCGCCAAGCCTTCTACTGGTACAATGCCAGTATGGGCAACAA CTTAAGCTCGCAGGCCTCAGGTGCCTACATCTTCAGACCCGAACGACAGGAACCACTGCT TGTCAGCCACTGGGCTAAAACCCACCTTGTGAAGACAGACTTGGTGCAGGAAGTGCACCA GAACTTCTCAGCCTGGTGTTCCCAGGTGGTTCGCCTATATCCAGGACAGCGGTACCTGGA GCTAGAGTGGACGGTGGGGCCCATACCTACAGGTGACAGCTGGGGGAAGGAGATCATTAG TCGCTTTGACACTACTCTGGAGACAGATGGACTCTTCTACACAGACAGCAATGGCCGGGA GATCCTGGAGAGGAGGCGGGATTATCGACCCACGTGGAAGCTCAACCAGACTGAGCCAGT GGCGGGAAACTACTATCCAGTCAACAGCCGCATATACATCACGGATGGGAAGACGCAGCT GACTGTGCTGACTGACCGCTCCCAGGGGGGCAGTAGCCTGGGTGACGGCTCCGTAGAGCT CATGGTCCACCGAAGGCTGCTGGTAGACGATGCACGTGGAGTAGGGGAGCCGCTGCTGGA GGAGGGGTCGGGGCTGTGGGTGCGAGGGCGCCACCTCGTGCTGCTGGACAAAGCCCGGAC CGCAGCCTCCGGGCACCGGTTGCAGGCGGAGAAGGAGGTCCTAGCCCCGCAGGTGGTGCT GGCCCGGGGTGGCGGTGTCCCCTACTGCCTCAAGGTCGCCCCACGCACGCAGTTCTCTGG GCTGCGCAGAGAACTGCCTCTCTCGGTACATCTACTCACATTGGCCCACTGGGGCCCAGA GACGCTGCTGCTGCGCTTTGAGCACCAGTTTGCCGTAGGGGAGGACGCGGGCCGCAACCT GAGCTCCCCGGTGACCTTCGACTTGACGAATCTGTTTTCCACTTTCACCATCACCTCCCT GCGGGAGACCACGCTGGCGGCCAACCAGCTCCAGGCCCACTCCTCCAGGCTCAAGTGGAC AGCAAACACGGGCCCCACACCCCATCCTCCTCCCTCCCGGCTGGTGTCTGCCACCATCAC ATTGCAGCCCATGGAAATCCGAACCTTCTTGGCCTCCGTCCAATGGGAAGAAGACTGCTA GACCCACTGGGGGCCAGATGCCCCCTTCTGAGCCTAAGTTCCTTCCTCCAGGGGTAGGGC AAACTCTCCCCCTTTTGCTGATGCCACCGCCACCACCACCACAAGCCATTAAAATGCCAC TACCAAGACTCGGGTCAAGGTCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTCCTGCAGGTGTGCAACCAGCTGGAGGCACTGGTGGGTCCAGCAGCCAACATGGGACC CTATGGTTCCGGAGACAGCGCACCCCTCAAAGAGGCGATGGCCGTGCTCCAGCACCACGA TGCGGTCAGCGGCACCTCGCGGCAGCATGTGGCCAACGACTACGCACGCCAGCTGGCCGA AAGCTGGGGGCCTTGCGAGGTTCTCCTGAGCAATGCGCTGGCGCAGCTCAGCGGCTCCAA GAAGGATTTCGTGTTCTGCCACAAGCTCAACATCAGTGTCTGTCCCCTCACCCAGAACGC GGAGAAATTCCAGGTGACCATTTATAACCCCCTGGGGCGGAAAGTGGATTGGATGGTGCG GCTGCCTGTCAGCGAACACGTTTACCTTGTGAAAGATCCCAATGGCACAGTTGTGCCCAG CGATGTGGTGACAGTTCCCAGCTCAGACAGTCAGGACCTGCTTTTCTCAGCCTCAGTGCC TGCCCTCGGCTTCAGCATCTACTCAGTAACTCGGGTGCCTGGCCAAAGTCCCCAGGCCTA TGACCGCCATCCCAGATCCCAGAAGCCCTGGTCCCGTGTCTTGGTCATCCAGAATGAGCA CATCCGGGCTAGGTTTAATCCTGACACAGGGCTCTTAATGGAGATTGAGAACCTGGATGA GAACCTCCTGCTGCCTGTTCGCCAAGCCTTCTACTGGTACAATGCCAGTATGGGCAACAA CTTAAGCTCGCAGGCCTCAGGTGCCTACATCTTCAGACCCGAACGACAGGAACCACTGCT TGTCAGCCACTGGGCTAAAACCCACCTTGTGAAGACAGACTTGGTGCAGGAAGTGCACCA GAACTTCTCAGCCTGGTGTTCCCAGGTGGTTCGCCTATATCCAGGACAGCGGTACCTGGA GCTAGAGTGGACGGTGGGGCCCATACCTACAGGTGACAGCTGGGGGAAGGAGATCATTAG TCGCTTTGACACTACTCTGGAGACAGATGGACTCTTCTACACAGACAGCAATGGCCGGGA GATCCTGGAGAGGAGGCGGGATTATCGACCCACGTGGAAGCTCAACCAGACTGAGCCAGT GGCGGGAAACTACTATCCAGTCAACAGCCGCATATACATCACGGATGGGAAGACGCAGCT GACTGTGCTGACTGACCGCTCCCAGGGGGGCAGTAGCCTGGGTGACGGCTCCGTAGAGCT CATGGTCCACCGAAGGCTGCTGGTAGACGATGCACGTGGAGTAGGGGAGCCGCTGCTGGA GGAGGGGTCGGGGCTGTGGGTGCGAGGGCGCCACCTCGTGCTGCTGGACAAAGCCCGGAC CGCAGCCTCCGGGCACCGGTTGCAGGCGGAGAAGGAGGTCCTAGCCCCGCAGGTGGTGCT GGCCCGGGGTGGCGGTGTCCCCTACTGCCTCAAGGTCGCCCCACGCACGCAGTTCTCTGG GCTGCGCAGAGAACTGCCTCTCTCGGTACATCTACTCACATTGGCCCACTGGGGCCCAGA GACGCTGCTGCTGCGCTTTGAGCACCAGTTTGCCGTAGGGGAGGACGCGGGCCGCAACCT GAGCTCCCCGGTGACCTTCGACTTGACGAATCTGTTTTCCACTTTCACCATCACCTCCCT GCGGGAGACCACGCTGGCGGCCAACCAGCTCCAGGCCCACTCCTCCAGGCTCAAGTGGAC AGCAAACACGGGCCCCACACCCCATCCTCCTCCCTCCCGGCTGGTGTCTGCCACCATCAC ATTGCAGCCCATGGAAATCCGAACCTTCTTGGCCTCCGTCCAATGGGAAGAAGACTGCTA GACCCACTGGGGGCCAGATGCCCCCTTCTGAGCCTAAGTTCCTTCCTCCAGGGGTAGGGC AAACTCTCCCCCTTTTGCTGATGCCACCGCCACCACCACCACAAGCCATTAAAATGCCAC TACCAAGACTCGGGTCAAGGTCCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 820-1887, + strand, RNAz p=0.683138 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 820-1887, + strand, RNAz p=0.683138 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of U68382, + |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 92-201, gnl|bosTau2|chr7 (8373992-8373883) | |
| 92-201, gnl|Hg17|chr19 (12629367-12629258) | |
| 92-201, gnl|Mm7|chr8 (83680253-83680362) | |
| 308-438, gnl|bosTau2|chr7 (8373211-8373081) | |
| 308-438, gnl|Hg17|chr19 (12628501-12628372) | |
| 308-438, gnl|Mm7|chr8 (83680805-83680931) | |
| 639-814, gnl|bosTau2|chr7 (8370936-8370761) | |
| 639-814, gnl|Hg17|chr19 (12624149-12623967) | |
| 639-814, gnl|Mm7|chr8 (83682793-83682963) | |
| 820-928, gnl|bosTau2|chr7 (8369181-8369073) | |
| 820-928, gnl|Hg17|chr19 (12622031-12621923) | |
| 820-928, gnl|Mm7|chr8 (83683865-83683973) | |
| 935-1039, gnl|bosTau2|chr7 (8368986-8368882) | |
| 935-1039, gnl|canFam2|chr20 (52461316-52461177) | |
| 935-1039, gnl|dasNov1|scaffold_41002 (7893-8032) | |
| 935-1039, gnl|echTel1|scaffold_156638 (1769-1908) | |
| 935-1039, gnl|hg17|chr19 (11561086-11561223) | |
| 935-1039, gnl|Hg17|chr19 (12621827-12621723) | |
| 935-1039, gnl|loxAfr1|scaffold_84383 (6791-6652) | |
| 935-1039, gnl|mm7|chr8 (83684176-83684046) | |
| 935-1039, gnl|Mm7|chr8 (83684067-83684171) | |
| 935-1039, gnl|monDom2|scaffold_106 (3717358-3717489) | |
| 935-1039, gnl|panTro1|chr20_random (1434383-1434520) | |
| 935-1039, gnl|rheMac2|chr19 (12305590-12305729) | |
| 935-1039, gnl|rn3|chr19 (24718363-24718493) | |
| 1204-1432, gnl|bosTau2|chr7 (8367948-8367720) | |
| 1204-1432, gnl|Hg17|chr19 (12620217-12619989) | |
| 1204-1432, gnl|Mm7|chr8 (83685010-83685238) | |
| 1691-1941, gnl|bosTau2|chr7 (8366534-8366290) | |
| 1691-1941, gnl|Hg17|chr19 (12618547-12618317) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 92-201, gnl|bosTau2|chr7 (8373992-8373883) | |
| 92-201, gnl|Hg17|chr19 (12629367-12629258) | |
| 92-201, gnl|Mm7|chr8 (83680253-83680362) | |
| 308-438, gnl|bosTau2|chr7 (8373211-8373081) | |
| 308-438, gnl|Hg17|chr19 (12628501-12628372) | |
| 308-438, gnl|Mm7|chr8 (83680805-83680931) | |
| 639-814, gnl|bosTau2|chr7 (8370936-8370761) | |
| 639-814, gnl|Hg17|chr19 (12624149-12623967) | |
| 639-814, gnl|Mm7|chr8 (83682793-83682963) | |
| 820-928, gnl|bosTau2|chr7 (8369181-8369073) | |
| 820-928, gnl|Hg17|chr19 (12622031-12621923) | |
| 820-928, gnl|Mm7|chr8 (83683865-83683973) | |
| 935-1039, gnl|bosTau2|chr7 (8368986-8368882) | |
| 935-1039, gnl|canFam2|chr20 (52461316-52461177) | |
| 935-1039, gnl|dasNov1|scaffold_41002 (7893-8032) | |
| 935-1039, gnl|echTel1|scaffold_156638 (1769-1908) | |
| 935-1039, gnl|hg17|chr19 (11561086-11561223) | |
| 935-1039, gnl|Hg17|chr19 (12621827-12621723) | |
| 935-1039, gnl|loxAfr1|scaffold_84383 (6791-6652) | |
| 935-1039, gnl|mm7|chr8 (83684176-83684046) | |
| 935-1039, gnl|Mm7|chr8 (83684067-83684171) | |
| 935-1039, gnl|monDom2|scaffold_106 (3717358-3717489) | |
| 935-1039, gnl|panTro1|chr20_random (1434383-1434520) | |
| 935-1039, gnl|rheMac2|chr19 (12305590-12305729) | |
| 935-1039, gnl|rn3|chr19 (24718363-24718493) | |
| 1204-1432, gnl|bosTau2|chr7 (8367948-8367720) | |
| 1204-1432, gnl|Hg17|chr19 (12620217-12619989) | |
| 1204-1432, gnl|Mm7|chr8 (83685010-83685238) | |
| 1691-1941, gnl|bosTau2|chr7 (8366534-8366290) | |
| 1691-1941, gnl|Hg17|chr19 (12618547-12618317) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| csp (0.805932) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| ill (0.175593) | |
| ctl (0.153069) | |
| cli (0.152812) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| ute (0.132784) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| jca (0.11396) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.805932) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| ill (0.175593) | |
| ctl (0.153069) | |
| cli (0.152812) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| ute (0.132784) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| jca (0.11396) |