Non-Coding RNA Search

Ss1.1-LyN1-MLN01E100070.5

Sequence:


               
               GAGTTCGTGGCCGGTGGCGGCGGTGGAGACAGCGGCGACCTGGGGATCGAGCTGGAGGGG
CCTGGGGAGCGTGTGGAGATCTCTAGCACGAGCGTGAGGGACCTCCCGCCGGGATGCCTG
GGGAGCAGATGGACCCTACTGGAAGTCAGTTGGATTCAGATTTCTCTCAGCAAGACACAC
CTTGCCTGATAATTGAAGATTCTCAGCCTGAAAGCCAGGTTCTAGAAGATGATTCTGGTT
CTCACTTCAGTATGCTGTCTCGACACCTTCCCAATCTACAGACACACAAAGAGAACCCTG
TGTTGGATGTTGTGTCCAATACTGAACAGACAGGTGGAGAAGAACAAGGAGACGATAATA
GTAGTTTCAATGAATGTCTGAAAGAAAACAAAGCTGCAGACTCCATGGATTCTTCTCATT
TGGACACATGTGGTTCCATCAGTCAGGTCATTGAACAGTTACCTCAGCCAAATAGGACAA
GCAGGTATACTACTGTTTGAAGGAATTTATTTAAATTTATTAGTGGATTAATTGTTTTAT
CTCATCCCAAGGATAAAGGAATTAATCTTATTTTTGTGAATTAGGGAGTAGGATTTGAGG
ATTTTTTAGCTAGTGTTCTATTGGTACTGAAGGCTGGACTCCTTTTTTCTGAAGGTGGTA
ACATTCTTACACCTACGTTATTGAAATTGTGACCTGTCTTGTGCATGTGAAACAAAATAA
GCACTCCTCATTCTCAGCATAGAATTGACTTATTAGTAGAAAAAATAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTTCGTGGCCGGTGGCGGCGGTGGAGACAGCGGCGACCTGGGGATCGAGCTGGAGGGG
CCTGGGGAGCGTGTGGAGATCTCTAGCACGAGCGTGAGGGACCTCCCGCCGGGATGCCTG
GGGAGCAGATGGACCCTACTGGAAGTCAGTTGGATTCAGATTTCTCTCAGCAAGACACAC
CTTGCCTGATAATTGAAGATTCTCAGCCTGAAAGCCAGGTTCTAGAAGATGATTCTGGTT
CTCACTTCAGTATGCTGTCTCGACACCTTCCCAATCTACAGACACACAAAGAGAACCCTG
TGTTGGATGTTGTGTCCAATACTGAACAGACAGGTGGAGAAGAACAAGGAGACGATAATA
GTAGTTTCAATGAATGTCTGAAAGAAAACAAAGCTGCAGACTCCATGGATTCTTCTCATT
TGGACACATGTGGTTCCATCAGTCAGGTCATTGAACAGTTACCTCAGCCAAATAGGACAA
GCAGGTATACTACTGTTTGAAGGAATTTATTTAAATTTATTAGTGGATTAATTGTTTTAT
CTCATCCCAAGGATAAAGGAATTAATCTTATTTTTGTGAATTAGGGAGTAGGATTTGAGG
ATTTTTTAGCTAGTGTTCTATTGGTACTGAAGGCTGGACTCCTTTTTTCTGAAGGTGGTA
ACATTCTTACACCTACGTTATTGAAATTGTGACCTGTCTTGTGCATGTGAAACAAAATAA
GCACTCCTCATTCTCAGCATAGAATTGACTTATTAGTAGAAAAAATAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61883589|ref|XP_612777.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61883589|ref|XP_612777.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               477-622, + strand, RNAz p=0.997696

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               477-622, + strand, RNAz p=0.997696

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               114-306, gnl|bosTau2|chr21 (34341276-34341084)
               

               
               114-306, gnl|Hg17|chr15 (41571965-41571773)
               

               
               114-306, gnl|Mm7|chr2 (121011564-121011372)
               


               
               397-776, gnl|bosTau2|chr21 (34340556-34340170)
               

               
               397-776, gnl|Hg17|chr15 (41571246-41570566)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               114-306, gnl|bosTau2|chr21 (34341276-34341084)
               

               
               114-306, gnl|Hg17|chr15 (41571965-41571773)
               

               
               114-306, gnl|Mm7|chr2 (121011564-121011372)
               


               
               397-776, gnl|bosTau2|chr21 (34340556-34340170)
               

               
               397-776, gnl|Hg17|chr15 (41571246-41570566)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	114-306, gnl\|bosTau2\|chr21 (34341276-34341084)
	114-306, gnl\|Hg17\|chr15 (41571965-41571773)
	114-306, gnl\|Mm7\|chr2 (121011564-121011372)

	397-776, gnl\|bosTau2\|chr21 (34340556-34340170)
	397-776, gnl\|Hg17\|chr15 (41571246-41570566)