Ss1.1-LyN1-MLN01E110033.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTGGGCGGAGCCAGGAGCAAGATGGCTGCGCCCGAAGCTGCCACGGTGCCGCAAGCTTC CGGGGGTCCCCGGGCTCCGGCGTGCCTGTTGGTGCTGGGAATGGCGGGGTCTGGGAAAAC CACCTTTGTACAGAGGCTCACCGGACATCTGCATAGTCAAGGCTCTCCACCTTATGTGAT CAACCTGGACCCAGCTGTGCATGAAGTTCCCTTTCCTGCCAATATTGATATTCGTGACAC TGTGAAGTATAAAGAAGTCATGAAACAGTATGGACTTGGACCGAACGGCGGCATAGTGAC CTCACTCAATCTCTTTGCTACCAGATTTGATCAGGTGATGAAATTCATTGAGAAGGCCCA GAACACATCTAAGTATGTCTTAATTGACACACCTGGACAGATTGAAGTGTTCACCTGGTC AGCTTCTGGGACAATCATCACTGAGGCCCTGGCATCCTCGTTTCCAACGATTGTCGTTTA CGTAATGGACACTTCTCGAAGTACCAATCCAGTGACCTTCATGTCCAATATGCTCTATGC CTGCAGCATCTTGTACAAAACCAAGCTGCCTTTTATTGTGGTCATGAATAAAACTGACAT CATTGATCACAGCTTTGCAGTGGAATGGATGCAGGATTTTGAGGCTTTCCAAGATGCCTT GAATCAAGAGACTACATACGTCAGTAACCTGACTCGTTCAATGAGCCTGGTGTTAGATGA GTTTTACAGCTCACTCAGGGTGGTGGGTGTGTCTGCTGTGCTGGGTACAGGCTTAGATGA ATTCTTCGTGCAAGTCGCCAGTGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTGGGCGGAGCCAGGAGCAAGATGGCTGCGCCCGAAGCTGCCACGGTGCCGCAAGCTTC CGGGGGTCCCCGGGCTCCGGCGTGCCTGTTGGTGCTGGGAATGGCGGGGTCTGGGAAAAC CACCTTTGTACAGAGGCTCACCGGACATCTGCATAGTCAAGGCTCTCCACCTTATGTGAT CAACCTGGACCCAGCTGTGCATGAAGTTCCCTTTCCTGCCAATATTGATATTCGTGACAC TGTGAAGTATAAAGAAGTCATGAAACAGTATGGACTTGGACCGAACGGCGGCATAGTGAC CTCACTCAATCTCTTTGCTACCAGATTTGATCAGGTGATGAAATTCATTGAGAAGGCCCA GAACACATCTAAGTATGTCTTAATTGACACACCTGGACAGATTGAAGTGTTCACCTGGTC AGCTTCTGGGACAATCATCACTGAGGCCCTGGCATCCTCGTTTCCAACGATTGTCGTTTA CGTAATGGACACTTCTCGAAGTACCAATCCAGTGACCTTCATGTCCAATATGCTCTATGC CTGCAGCATCTTGTACAAAACCAAGCTGCCTTTTATTGTGGTCATGAATAAAACTGACAT CATTGATCACAGCTTTGCAGTGGAATGGATGCAGGATTTTGAGGCTTTCCAAGATGCCTT GAATCAAGAGACTACATACGTCAGTAACCTGACTCGTTCAATGAGCCTGGTGTTAGATGA GTTTTACAGCTCACTCAGGGTGGTGGGTGTGTCTGCTGTGCTGGGTACAGGCTTAGATGA ATTCTTCGTGCAAGTCGCCAGTGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 593-711, + strand, RNAz p=0.508815 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 593-711, + strand, RNAz p=0.508815 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-133, gnl|bosTau2|chr11 (52864961-52864829) | |
| 1-133, gnl|Hg17|chr2 (27763555-27763687) | |
| 1-133, gnl|Mm7|chr5 (30527268-30527399) | |
| 434-546, gnl|bosTau2|chr11 (52853392-52853280) | |
| 434-546, gnl|Hg17|chr2 (27769640-27769752) | |
| 434-546, gnl|Mm7|chr5 (30533610-30533722) | |
| 593-741, gnl|bosTau2|chr11 (52851439-52851291) | |
| 593-741, gnl|canFam2|chr17 (24657892-24658039) | |
| 593-741, gnl|danRer3|chr17 (6753414-6753276) | |
| 593-741, gnl|dasNov1|scaffold_1540 (101220-101343) | |
| 593-741, gnl|echTel1|scaffold_290655 (42335-42482) | |
| 593-741, gnl|fr1|chrUn (239029184-239029045) | |
| 593-741, gnl|galGal2|chr3 (102512918-102512774) | |
| 593-741, gnl|hg17|chr2 (27773388-27773535) | |
| 593-741, gnl|Hg17|chr2 (27773403-27773551) | |
| 593-741, gnl|loxAfr1|scaffold_10409 (1835-1688) | |
| 593-741, gnl|mm7|chr5 (30536413-30536560) | |
| 593-741, gnl|Mm7|chr5 (30536428-30536576) | |
| 593-741, gnl|monDom2|scaffold_1 (148555434-148555287) | |
| 593-741, gnl|oryCun1|scaffold_208178 (58494-58641) | |
| 593-741, gnl|panTro1|chr12 (28714380-28714527) | |
| 593-741, gnl|rheMac2|chr13 (27618482-27618629) | |
| 593-741, gnl|rn3|chr6 (25018878-25018731) | |
| 593-741, gnl|tetNig1|chrUn_random (6449597-6449457) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-133, gnl|bosTau2|chr11 (52864961-52864829) | |
| 1-133, gnl|Hg17|chr2 (27763555-27763687) | |
| 1-133, gnl|Mm7|chr5 (30527268-30527399) | |
| 434-546, gnl|bosTau2|chr11 (52853392-52853280) | |
| 434-546, gnl|Hg17|chr2 (27769640-27769752) | |
| 434-546, gnl|Mm7|chr5 (30533610-30533722) | |
| 593-741, gnl|bosTau2|chr11 (52851439-52851291) | |
| 593-741, gnl|canFam2|chr17 (24657892-24658039) | |
| 593-741, gnl|danRer3|chr17 (6753414-6753276) | |
| 593-741, gnl|dasNov1|scaffold_1540 (101220-101343) | |
| 593-741, gnl|echTel1|scaffold_290655 (42335-42482) | |
| 593-741, gnl|fr1|chrUn (239029184-239029045) | |
| 593-741, gnl|galGal2|chr3 (102512918-102512774) | |
| 593-741, gnl|hg17|chr2 (27773388-27773535) | |
| 593-741, gnl|Hg17|chr2 (27773403-27773551) | |
| 593-741, gnl|loxAfr1|scaffold_10409 (1835-1688) | |
| 593-741, gnl|mm7|chr5 (30536413-30536560) | |
| 593-741, gnl|Mm7|chr5 (30536428-30536576) | |
| 593-741, gnl|monDom2|scaffold_1 (148555434-148555287) | |
| 593-741, gnl|oryCun1|scaffold_208178 (58494-58641) | |
| 593-741, gnl|panTro1|chr12 (28714380-28714527) | |
| 593-741, gnl|rheMac2|chr13 (27618482-27618629) | |
| 593-741, gnl|rn3|chr6 (25018878-25018731) | |
| 593-741, gnl|tetNig1|chrUn_random (6449597-6449457) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (0.174948) | |
| ebs (0.118301) | |
| eje (0.0988338) |