Ss1.1-LyN1-MLN01E110072.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTGTGTCTGTGTCGAGGCGTCAGGAGGGCCTAGGTCCGTGTGCGGCGCCCTTCGGCCGG CCTGAGCCCCAGAGTCAGCTCCCCTTGCTCGCCCAGCGCCCCCAGGCCGCTCCCGGGGCT CACGGATCAGTACTGAACCAGATATCAGAAAACATCTCCGAGGACAGAAGGGAGAGCACA GACTCTGTTCGGAACAAGTCAGGTTCCTGAGCCTGAATAATGACCGCTGAGTCGAGGGAA GCCACGGGTCTGTCCCCCCAGGCTGCCCAGGAGAAGGACGGCATCGTGATAGTGAAGGTG GAGGAGGAAGATGAGGAGGAGCACATGTGGGGGCAGGACACCAGCCTGCAGGAGTCCCCT CCTCCCGACCCAGAGATATTCCGCCAGCGCTTCCGGCACTTCTGCTACCAGAACACCTTT GGGCCTCGAGAGGCCCTTAGTCGATTAAAGGAACTTTGTCACCAGTGGCTACGGCCAGAA ATAAACACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTCTCCATTCTG CCCAAGGAGCTGCAGGTCTGGCTGCAGGAATACCGTCCTGATAGTGGGGAGGAGGCCGTG ACCCTTCTGGAAGATTTGGAGCTTGATTTATCGGGACAGCAGGTCCCAGGTCAGGTTCAT GGACCTGAGATGCTCGCAAGGGGGATGGTGCCTCTGGATCCAGTACAGGAGTCTTCGAGC TTTGACCTTCATCACGAGGCCACCCCGTCCCATTTCAAGCATTCATCTCGGAAACCCCGC CTCTCACAACCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTGTGTCTGTGTCGAGGCGTCAGGAGGGCCTAGGTCCGTGTGCGGCGCCCTTCGGCCGG CCTGAGCCCCAGAGTCAGCTCCCCTTGCTCGCCCAGCGCCCCCAGGCCGCTCCCGGGGCT CACGGATCAGTACTGAACCAGATATCAGAAAACATCTCCGAGGACAGAAGGGAGAGCACA GACTCTGTTCGGAACAAGTCAGGTTCCTGAGCCTGAATAATGACCGCTGAGTCGAGGGAA GCCACGGGTCTGTCCCCCCAGGCTGCCCAGGAGAAGGACGGCATCGTGATAGTGAAGGTG GAGGAGGAAGATGAGGAGGAGCACATGTGGGGGCAGGACACCAGCCTGCAGGAGTCCCCT CCTCCCGACCCAGAGATATTCCGCCAGCGCTTCCGGCACTTCTGCTACCAGAACACCTTT GGGCCTCGAGAGGCCCTTAGTCGATTAAAGGAACTTTGTCACCAGTGGCTACGGCCAGAA ATAAACACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTCTCCATTCTG CCCAAGGAGCTGCAGGTCTGGCTGCAGGAATACCGTCCTGATAGTGGGGAGGAGGCCGTG ACCCTTCTGGAAGATTTGGAGCTTGATTTATCGGGACAGCAGGTCCCAGGTCAGGTTCAT GGACCTGAGATGCTCGCAAGGGGGATGGTGCCTCTGGATCCAGTACAGGAGTCTTCGAGC TTTGACCTTCATCACGAGGCCACCCCGTCCCATTTCAAGCATTCATCTCGGAAACCCCGC CTCTCACAACCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 359-478, - strand, RNAz p=0.875871 | |
| 482-601, - strand, RNAz p=0.640679 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 359-478, - strand, RNAz p=0.875871 | |
| 482-601, - strand, RNAz p=0.640679 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 1-125, gnl|bosTau2|chr25 (33114740-33114856) | |
| 1-125, gnl|canFam2|chr6 (12593242-12593054) | |
| 1-125, gnl|dasNov1|scaffold_3138 (46333-46520) | |
| 1-125, gnl|echTel1|scaffold_142773 (562-374) | |
| 1-125, gnl|hg17|chr7 (99257779-99257967) | |
| 1-125, gnl|Hg17|chr7 (99257877-99258001) | |
| 1-125, gnl|loxAfr1|scaffold_193720 (390-578) | |
| 1-125, gnl|mm7|chr5 (137030686-137030873) | |
| 1-125, gnl|Mm7|chr5 (137030784-137030907) | |
| 1-125, gnl|monDom2|scaffold_66 (1805174-1805360) | |
| 1-125, gnl|oryCun1|scaffold_154522 (9973-10161) | |
| 1-125, gnl|panTro1|chr6 (101039955-101040143) | |
| 1-125, gnl|rheMac2|chr3 (47290501-47290689) | |
| 1-125, gnl|rn3|chr12 (17519794-17519982) | |
| 323-644, gnl|bosTau2|chr18 (55668223-55667907) | |
| 323-644, gnl|Hg17|chr19 (62027759-62027440) | |
| 323-644, gnl|Mm7|chr7 (6277883-6277608) | |
| 358-636, gnl|bosTau2|chr18 (56272320-56272043) | |
| 358-636, gnl|canFam2|chr1 (102771777-102771461) | |
| 358-636, gnl|dasNov1|scaffold_166747 (5181-4867) | |
| 358-636, gnl|echTel1|scaffold_187823 (2617-2933) | |
| 358-636, gnl|hg17|chr19 (63410064-63410379) | |
| 358-636, gnl|Hg17|chr19 (63410099-63410375) | |
| 358-636, gnl|loxAfr1|scaffold_35770 (898-582) | |
| 358-636, gnl|mm7|chr7 (11431172-11431485) | |
| 358-636, gnl|Mm7|chr7 (11431204-11431481) | |
| 358-636, gnl|oryCun1|scaffold_152916 (16011-15715) | |
| 358-636, gnl|panTro1|chr20 (61147083-61147399) | |
| 358-636, gnl|rheMac2|chr19 (63973384-63973700) | |
| 358-636, gnl|rn3|chr1 (72823075-72823385) | |
| 364-565, gnl|bosTau2|chr13 (46206175-46206376) | |
| 364-565, gnl|canFam2|chr24 (27793270-27793767) | |
| 364-565, gnl|dasNov1|scaffold_2507 (103656-104125) | |
| 364-565, gnl|echTel1|scaffold_309798 (84835-85263) | |
| 364-565, gnl|hg17|chr20 (34005015-34005511) | |
| 364-565, gnl|Hg17|chr20 (34005317-34005116) | |
| 364-565, gnl|loxAfr1|scaffold_29083 (12644-13151) | |
| 364-565, gnl|mm7|chr2 (156052753-156053103) | |
| 364-565, gnl|Mm7|chr2 (156053014-156052813) | |
| 364-565, gnl|monDom2|scaffold_6 (11109423-11108930) | |
| 364-565, gnl|oryCun1|scaffold_143027 (25188-24754) | |
| 364-565, gnl|panTro1|chr21 (36225996-36226492) | |
| 364-565, gnl|rheMac2|chr10 (28569615-28569119) | |
| 364-565, gnl|rn3|chr3 (146616106-146616456) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-125, gnl|bosTau2|chr25 (33114740-33114856) | |
| 1-125, gnl|canFam2|chr6 (12593242-12593054) | |
| 1-125, gnl|dasNov1|scaffold_3138 (46333-46520) | |
| 1-125, gnl|echTel1|scaffold_142773 (562-374) | |
| 1-125, gnl|hg17|chr7 (99257779-99257967) | |
| 1-125, gnl|Hg17|chr7 (99257877-99258001) | |
| 1-125, gnl|loxAfr1|scaffold_193720 (390-578) | |
| 1-125, gnl|mm7|chr5 (137030686-137030873) | |
| 1-125, gnl|Mm7|chr5 (137030784-137030907) | |
| 1-125, gnl|monDom2|scaffold_66 (1805174-1805360) | |
| 1-125, gnl|oryCun1|scaffold_154522 (9973-10161) | |
| 1-125, gnl|panTro1|chr6 (101039955-101040143) | |
| 1-125, gnl|rheMac2|chr3 (47290501-47290689) | |
| 1-125, gnl|rn3|chr12 (17519794-17519982) | |
| 323-644, gnl|bosTau2|chr18 (55668223-55667907) | |
| 323-644, gnl|Hg17|chr19 (62027759-62027440) | |
| 323-644, gnl|Mm7|chr7 (6277883-6277608) | |
| 358-636, gnl|bosTau2|chr18 (56272320-56272043) | |
| 358-636, gnl|canFam2|chr1 (102771777-102771461) | |
| 358-636, gnl|dasNov1|scaffold_166747 (5181-4867) | |
| 358-636, gnl|echTel1|scaffold_187823 (2617-2933) | |
| 358-636, gnl|hg17|chr19 (63410064-63410379) | |
| 358-636, gnl|Hg17|chr19 (63410099-63410375) | |
| 358-636, gnl|loxAfr1|scaffold_35770 (898-582) | |
| 358-636, gnl|mm7|chr7 (11431172-11431485) | |
| 358-636, gnl|Mm7|chr7 (11431204-11431481) | |
| 358-636, gnl|oryCun1|scaffold_152916 (16011-15715) | |
| 358-636, gnl|panTro1|chr20 (61147083-61147399) | |
| 358-636, gnl|rheMac2|chr19 (63973384-63973700) | |
| 358-636, gnl|rn3|chr1 (72823075-72823385) | |
| 364-565, gnl|bosTau2|chr13 (46206175-46206376) | |
| 364-565, gnl|canFam2|chr24 (27793270-27793767) | |
| 364-565, gnl|dasNov1|scaffold_2507 (103656-104125) | |
| 364-565, gnl|echTel1|scaffold_309798 (84835-85263) | |
| 364-565, gnl|hg17|chr20 (34005015-34005511) | |
| 364-565, gnl|Hg17|chr20 (34005317-34005116) | |
| 364-565, gnl|loxAfr1|scaffold_29083 (12644-13151) | |
| 364-565, gnl|mm7|chr2 (156052753-156053103) | |
| 364-565, gnl|Mm7|chr2 (156053014-156052813) | |
| 364-565, gnl|monDom2|scaffold_6 (11109423-11108930) | |
| 364-565, gnl|oryCun1|scaffold_143027 (25188-24754) | |
| 364-565, gnl|panTro1|chr21 (36225996-36226492) | |
| 364-565, gnl|rheMac2|chr10 (28569615-28569119) | |
| 364-565, gnl|rn3|chr3 (146616106-146616456) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) | |
| jca (0.11396) |