Ss1.1-LyN1-MLN01E110093.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCCGGCCCGCGGTGCGCGCGCAGGTTGGTGCGTCGGTCGGGGGCGCGCTCGGGTAACCT GTACCCCACGTAGTCGCCGGTTACCGATCGGACTAAGCTCCAGTGGTGATTTGCAAGTCA GAATGTCCCCAGAAGTGGCCTTGAACCGAATTTCTCCAATGCTCTCCCCGTTCATATCTA GCGTGGTCCGTAATGGAAAAGTGGGACTAGATGCTACCAACTGTTTGAGGATAACGGACT TGAAGTCTGGCTGCACGTCCTTGACTCCTGGACCCAACTGTGACCGATTTAAATTGCACA TACCATACGCTGGAGAGACCTTAAAATGGGATATCATTTTCAATGCCCAATATCCAGAGC TGCCTCCCGATTTTATCTTCGGAGAAGATGCTGAGTTCCTGCCAGACCCCTCGGCTCTGC ATAACCTTGCCTCCTGGAATCCATCAAATCCTGAATGTCTCTTACTTGTGGTGAAGGAAC TTGTGCAACAGTATCACCAATTTCAATGCAGCCGTCTCCGTGAGAGCTCCCGCCTCATGT TTGAATACCAGACATTACTGGAAGAGCCGCAGTATGGAGAGAACATGGAAATTTATGCTG GGAAAAAGAACAACTGGACGGGTGAATTTTCAGCTCGTTTCCTTTTGAAGCTGCCAGTGG ATTTCAGCAATATTCCCACATACCTGCTCAAGGATGTGAATGAAGACCCGGGAGAAGATG TGGCCCTCCTTTCTGTCAGCTTCGAGGACACTGAAGCCACTCAGGTGTACCCCAAGTTGT ACTTGTCACCCCGAATTGAACATGCACTTGGAGGCTCCTCAGCTCTTCACATCCCAGCTT TTCCAGGAGGAGGATGTCTCATTGATTATGTTCCTCAAGTGTGCCACCTGCTCACCAACA AGGTGCAGTATGTGATTCAAGGCTATCACAAAAGACGAGAGTACATTGCCGCTTTCCTCA GTCACTTTGGCACGGGTGTCGTGGAATACGATGCAGAAGGCTTTACAAAACTCACTCTGT TGCTGATGTGGAAAGATTTTTGTTTTCTTGTACACATTGACCTGCCCCTGTTTTTCCCTC GAGACCAGCCAACTCTCACATTCCAGTCCGTCTATCACTTCACCAACAGTGGACAGCTTT ATTCCCAGGCCCAGAAAAATTATCCATACAGCCCCAGATGGGATGGAAATGAAATGGCCA AAAGAGCAAAGGCTTATTTCAAAACCTTTGTCCCTCAGTTCCAGGAGGCAGCGTTTGCCA ATGGAAAGCTCTAGGAAACACCAGTCTTGAGAGGTGGCCAGCCCGTCTGCTCTGTCCACA TGCGTGTCAGCACATATGGCCGCTTCCTGGAAGCCAATGGAATGTCTTCATGGCAGCGTT TCGCACACACAGCAGCTTTGCGCCCCGACTGGAACCCAAACTTGAGCTGGCTGGCGGGGG ACCTGGATCCCAGAGCCCCCCACCTCTGGTTGCACCCTCTGTGTTTCTTTCGGCATTATT TCTAAGTTGGAAGAAATAAAGTCACAAATCATGATGCAGTATTTTTCCAGGGAAAGTAAG ACGCGCTACATGCACACACCCTTATTCAAAGCCTTTGTTTCTGAGACCTCTTTTACGATT AAACACTCCTTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCCGGCCCGCGGTGCGCGCGCAGGTTGGTGCGTCGGTCGGGGGCGCGCTCGGGTAACCT GTACCCCACGTAGTCGCCGGTTACCGATCGGACTAAGCTCCAGTGGTGATTTGCAAGTCA GAATGTCCCCAGAAGTGGCCTTGAACCGAATTTCTCCAATGCTCTCCCCGTTCATATCTA GCGTGGTCCGTAATGGAAAAGTGGGACTAGATGCTACCAACTGTTTGAGGATAACGGACT TGAAGTCTGGCTGCACGTCCTTGACTCCTGGACCCAACTGTGACCGATTTAAATTGCACA TACCATACGCTGGAGAGACCTTAAAATGGGATATCATTTTCAATGCCCAATATCCAGAGC TGCCTCCCGATTTTATCTTCGGAGAAGATGCTGAGTTCCTGCCAGACCCCTCGGCTCTGC ATAACCTTGCCTCCTGGAATCCATCAAATCCTGAATGTCTCTTACTTGTGGTGAAGGAAC TTGTGCAACAGTATCACCAATTTCAATGCAGCCGTCTCCGTGAGAGCTCCCGCCTCATGT TTGAATACCAGACATTACTGGAAGAGCCGCAGTATGGAGAGAACATGGAAATTTATGCTG GGAAAAAGAACAACTGGACGGGTGAATTTTCAGCTCGTTTCCTTTTGAAGCTGCCAGTGG ATTTCAGCAATATTCCCACATACCTGCTCAAGGATGTGAATGAAGACCCGGGAGAAGATG TGGCCCTCCTTTCTGTCAGCTTCGAGGACACTGAAGCCACTCAGGTGTACCCCAAGTTGT ACTTGTCACCCCGAATTGAACATGCACTTGGAGGCTCCTCAGCTCTTCACATCCCAGCTT TTCCAGGAGGAGGATGTCTCATTGATTATGTTCCTCAAGTGTGCCACCTGCTCACCAACA AGGTGCAGTATGTGATTCAAGGCTATCACAAAAGACGAGAGTACATTGCCGCTTTCCTCA GTCACTTTGGCACGGGTGTCGTGGAATACGATGCAGAAGGCTTTACAAAACTCACTCTGT TGCTGATGTGGAAAGATTTTTGTTTTCTTGTACACATTGACCTGCCCCTGTTTTTCCCTC GAGACCAGCCAACTCTCACATTCCAGTCCGTCTATCACTTCACCAACAGTGGACAGCTTT ATTCCCAGGCCCAGAAAAATTATCCATACAGCCCCAGATGGGATGGAAATGAAATGGCCA AAAGAGCAAAGGCTTATTTCAAAACCTTTGTCCCTCAGTTCCAGGAGGCAGCGTTTGCCA ATGGAAAGCTCTAGGAAACACCAGTCTTGAGAGGTGGCCAGCCCGTCTGCTCTGTCCACA TGCGTGTCAGCACATATGGCCGCTTCCTGGAAGCCAATGGAATGTCTTCATGGCAGCGTT TCGCACACACAGCAGCTTTGCGCCCCGACTGGAACCCAAACTTGAGCTGGCTGGCGGGGG ACCTGGATCCCAGAGCCCCCCACCTCTGGTTGCACCCTCTGTGTTTCTTTCGGCATTATT TCTAAGTTGGAAGAAATAAAGTCACAAATCATGATGCAGTATTTTTCCAGGGAAAGTAAG ACGCGCTACATGCACACACCCTTATTCAAAGCCTTTGTTTCTGAGACCTCTTTTACGATT AAACACTCCTTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1432-1551, - strand, RNAz p=0.660883 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1432-1551, - strand, RNAz p=0.660883 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 803-904, gnl|bosTau2|chr11 (58972306-58972407) | |
| 803-904, gnl|canFam2|chr17 (25304553-25304683) | |
| 803-904, gnl|danRer3|chrUn (139236129-139236007) | |
| 803-904, gnl|dasNov1|scaffold_3379 (38145-38016) | |
| 803-904, gnl|echTel1|scaffold_285657 (46216-46346) | |
| 803-904, gnl|galGal2|chr3 (23783083-23782962) | |
| 803-904, gnl|hg17|chr2 (28371701-28371829) | |
| 803-904, gnl|Hg17|chr2 (28371720-28371821) | |
| 803-904, gnl|loxAfr1|scaffold_109880 (4654-4782) | |
| 803-904, gnl|mm7|chr5 (31033859-31033987) | |
| 803-904, gnl|Mm7|chr5 (31033877-31033978) | |
| 803-904, gnl|monDom2|scaffold_1 (147733934-147733808) | |
| 803-904, gnl|oryCun1|scaffold_137478 (1069-940) | |
| 803-904, gnl|panTro1|chr12 (29317827-29317955) | |
| 803-904, gnl|rheMac2|chr13 (28232969-28233097) | |
| 803-904, gnl|rn3|chr6 (24495344-24495218) | |
| 803-904, gnl|tetNig1|chr10 (698312-698443) | |
| 1211-1614, gnl|bosTau2|chr11 (59069492-59069893) | |
| 1211-1614, gnl|canFam2|chr17 (25391409-25392077) | |
| 1211-1614, gnl|dasNov1|scaffold_15370 (48997-48299) | |
| 1211-1614, gnl|echTel1|scaffold_313638 (114192-113534) | |
| 1211-1614, gnl|hg17|chr2 (28472743-28473430) | |
| 1211-1614, gnl|Hg17|chr2 (28472968-28473377) | |
| 1211-1614, gnl|loxAfr1|scaffold_5327 (61117-61782) | |
| 1211-1614, gnl|mm7|chr5 (31116875-31117558) | |
| 1211-1614, gnl|Mm7|chr5 (31117097-31117501) | |
| 1211-1614, gnl|monDom2|scaffold_1 (147606847-147606175) | |
| 1211-1614, gnl|oryCun1|scaffold_204602 (105030-104342) | |
| 1211-1614, gnl|panTro1|chr12 (29418818-29419505) | |
| 1211-1614, gnl|rheMac2|chr13 (28334695-28335381) | |
| 1211-1614, gnl|rn3|chr6 (24410366-24409700) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 803-904, gnl|bosTau2|chr11 (58972306-58972407) | |
| 803-904, gnl|canFam2|chr17 (25304553-25304683) | |
| 803-904, gnl|danRer3|chrUn (139236129-139236007) | |
| 803-904, gnl|dasNov1|scaffold_3379 (38145-38016) | |
| 803-904, gnl|echTel1|scaffold_285657 (46216-46346) | |
| 803-904, gnl|galGal2|chr3 (23783083-23782962) | |
| 803-904, gnl|hg17|chr2 (28371701-28371829) | |
| 803-904, gnl|Hg17|chr2 (28371720-28371821) | |
| 803-904, gnl|loxAfr1|scaffold_109880 (4654-4782) | |
| 803-904, gnl|mm7|chr5 (31033859-31033987) | |
| 803-904, gnl|Mm7|chr5 (31033877-31033978) | |
| 803-904, gnl|monDom2|scaffold_1 (147733934-147733808) | |
| 803-904, gnl|oryCun1|scaffold_137478 (1069-940) | |
| 803-904, gnl|panTro1|chr12 (29317827-29317955) | |
| 803-904, gnl|rheMac2|chr13 (28232969-28233097) | |
| 803-904, gnl|rn3|chr6 (24495344-24495218) | |
| 803-904, gnl|tetNig1|chr10 (698312-698443) | |
| 1211-1614, gnl|bosTau2|chr11 (59069492-59069893) | |
| 1211-1614, gnl|canFam2|chr17 (25391409-25392077) | |
| 1211-1614, gnl|dasNov1|scaffold_15370 (48997-48299) | |
| 1211-1614, gnl|echTel1|scaffold_313638 (114192-113534) | |
| 1211-1614, gnl|hg17|chr2 (28472743-28473430) | |
| 1211-1614, gnl|Hg17|chr2 (28472968-28473377) | |
| 1211-1614, gnl|loxAfr1|scaffold_5327 (61117-61782) | |
| 1211-1614, gnl|mm7|chr5 (31116875-31117558) | |
| 1211-1614, gnl|Mm7|chr5 (31117097-31117501) | |
| 1211-1614, gnl|monDom2|scaffold_1 (147606847-147606175) | |
| 1211-1614, gnl|oryCun1|scaffold_204602 (105030-104342) | |
| 1211-1614, gnl|panTro1|chr12 (29418818-29419505) | |
| 1211-1614, gnl|rheMac2|chr13 (28334695-28335381) | |
| 1211-1614, gnl|rn3|chr6 (24410366-24409700) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| amn (0.417711) | |
| pan (0.23596) | |
| ece (0.229305) | |
| col (0.195008) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| tbr (0.154178) | |
| cli (0.152812) | |
| cst (0.140036) | |
| pla (0.133672) | |
| ova (0.129132) | |
| sug (0.127291) | |
| bla (0.124347) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| pan (0.23596) | |
| ece (0.229305) | |
| col (0.195008) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| tbr (0.154178) | |
| cli (0.152812) | |
| cst (0.140036) | |
| pla (0.133672) | |
| ova (0.129132) | |
| sug (0.127291) | |
| bla (0.124347) |