Non-Coding RNA Search

Ss1.1-LyN1-MLN01E110095.5

Sequence:


               
               GGAGCGAAACCAACGCCTGCCTCTGACCAGCAGCAGCGCTGCGGCCGTACCAACGCCTGC
CTCTGACCAGCAGCAGCGCTGCGGCCGTCGAGGGTTTCTCTGGCCAGTGTTGCTCCCACC
AGTCTACAGCATGGGGAATATCTTTGCAAACCTCTTCAAGGGCCTTTTTGGCAAGAAAGA
AATGCGCATTCTCATGGTGGGTCTAGATGCTGCGGGAAAGACCACCATCCTGTACAAACT
GAAGCTGGGTGAAATCGTGACCACCATTCCCACTATAGGCTTCAACGTGGAAACCGTGGA
GTACAAGAACATCAGCTTCACCGTGTGGGACGTGGGCGGCCAGGACAAGATCCGGCCACT
GTGGCGCCACTACTTCCAGAACACGCAGGGTCTCATCTTTGTGGTAGATAGTAATGACAG
AGAGCGTGTGAATGAGGCCCGAGAGGAGCTCATGAGGATGCTGGCAGAAGACGAGCTCAG
GGACGCTGTTCTGCTTGTGTTTGCTAACAAACAGGACCTTCCCAATGCCATGAATGCAGC
CGAGATCACCGACAAGCTGGGCCTACACTCTCTGCGCCACAGGAACTGGTACATTCAGGC
CACCTGTGCCACCAGTGGTGATGGGCTCTATGAGGGACTGGACTGGCTGTCCAATCAGCT
CCGGAACCAGAAGTGAGCTGTACACCTCTCTCCTCCCCTCTCACTCCCTCTTCTACCCTT
GCTTTACTCTCATGTGGCAAACGTGCCCCTGTGGTGTGAGTGCCAGAAGCTGTCTCCATG
GTCAGTCACAGTGTGCTTCACCATGCTGTAAATGTGCAGACGCAGCCTGCAACTGGGTTT
TTATTTAATGTAAATAGTTTTTGTTTCCAATGAGGCAGTTTCTGGTACTCCTATGCAATA
TTACTCAGCTTTTTTTATTGTAAAAAGAAAATCAACCCACTGTTTAGTACTGAGAAAGGA
TTTTAGGCACACGGGTCCTCTAGAAGTCACGTGTCAGACAGGCCCAATCCTCCTCCTCTG
GGCTTTAGATCTGTGTTGAGATCCATTTTGGTGGTTGGTTTTTAACCCAAACTCAGTGCA
TTTTTTAAAAATAGTTACAAATACAAGATAAGGAGAACACTTGAACACACAGAAGGGAGA
AATGTGCCTAGTGTAGGTTCTGCAGTAATCACCTGAGTCCAGTCCACTGGTGGTCTGTTT
CCCATTGGGAACATGAAATGAAATGGAGCAGAACCAGCCATGATCCATTCTGCATGGTCA
CAATAGGATCCCTCTGATTGGCTCTGTCTTGGGTCATCCCACACCCCATTGCGTTTTTGC
TTGTATTTGTGCTCACATGGCCGCCCAGGAGATGGACTGGAGCTGCAGCCACTGCTCCCA
GACCCCTTGGAGGAACCCCAGCCTTTTCTTGAGTCAACATGGGCACCTTGGTTGGAACAC
TCTGGCTGGAGCGGGAGCCCTGCAGTCCCCTTGCTTGCCTGCTCCGGGCTCTCTGGGGTC
TCACCAGCAGGAGCATGGGTGGTCATCCTAGAGCCCCAGCCCCTTGGAGCCCCTGTCTAC
ATGTGCTTTCACGCCCTTAGCCTGCAGGGGTCAGATTTGCCATCGAAAATGATAACCTCT
ACTTTTTTCTTTTGTATTTTGATAAACACTGAAGAAGCTGGAGCTGTTAAACTTTATCTT
GGGGAAAACCTCAGAACTGGTTTATTTGGTGTCGTGGAACCTCTTACTGCTTTCAATACA
CGATTAGTAATCAACTGTTTTGTATACTTGTTTTCAGTTTTCATTTCGACAAACAAGCAC
TGTAATTACAGCTATTAGAATAAAATCTCTTAACTATTAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGCGAAACCAACGCCTGCCTCTGACCAGCAGCAGCGCTGCGGCCGTACCAACGCCTGC
CTCTGACCAGCAGCAGCGCTGCGGCCGTCGAGGGTTTCTCTGGCCAGTGTTGCTCCCACC
AGTCTACAGCATGGGGAATATCTTTGCAAACCTCTTCAAGGGCCTTTTTGGCAAGAAAGA
AATGCGCATTCTCATGGTGGGTCTAGATGCTGCGGGAAAGACCACCATCCTGTACAAACT
GAAGCTGGGTGAAATCGTGACCACCATTCCCACTATAGGCTTCAACGTGGAAACCGTGGA
GTACAAGAACATCAGCTTCACCGTGTGGGACGTGGGCGGCCAGGACAAGATCCGGCCACT
GTGGCGCCACTACTTCCAGAACACGCAGGGTCTCATCTTTGTGGTAGATAGTAATGACAG
AGAGCGTGTGAATGAGGCCCGAGAGGAGCTCATGAGGATGCTGGCAGAAGACGAGCTCAG
GGACGCTGTTCTGCTTGTGTTTGCTAACAAACAGGACCTTCCCAATGCCATGAATGCAGC
CGAGATCACCGACAAGCTGGGCCTACACTCTCTGCGCCACAGGAACTGGTACATTCAGGC
CACCTGTGCCACCAGTGGTGATGGGCTCTATGAGGGACTGGACTGGCTGTCCAATCAGCT
CCGGAACCAGAAGTGAGCTGTACACCTCTCTCCTCCCCTCTCACTCCCTCTTCTACCCTT
GCTTTACTCTCATGTGGCAAACGTGCCCCTGTGGTGTGAGTGCCAGAAGCTGTCTCCATG
GTCAGTCACAGTGTGCTTCACCATGCTGTAAATGTGCAGACGCAGCCTGCAACTGGGTTT
TTATTTAATGTAAATAGTTTTTGTTTCCAATGAGGCAGTTTCTGGTACTCCTATGCAATA
TTACTCAGCTTTTTTTATTGTAAAAAGAAAATCAACCCACTGTTTAGTACTGAGAAAGGA
TTTTAGGCACACGGGTCCTCTAGAAGTCACGTGTCAGACAGGCCCAATCCTCCTCCTCTG
GGCTTTAGATCTGTGTTGAGATCCATTTTGGTGGTTGGTTTTTAACCCAAACTCAGTGCA
TTTTTTAAAAATAGTTACAAATACAAGATAAGGAGAACACTTGAACACACAGAAGGGAGA
AATGTGCCTAGTGTAGGTTCTGCAGTAATCACCTGAGTCCAGTCCACTGGTGGTCTGTTT
CCCATTGGGAACATGAAATGAAATGGAGCAGAACCAGCCATGATCCATTCTGCATGGTCA
CAATAGGATCCCTCTGATTGGCTCTGTCTTGGGTCATCCCACACCCCATTGCGTTTTTGC
TTGTATTTGTGCTCACATGGCCGCCCAGGAGATGGACTGGAGCTGCAGCCACTGCTCCCA
GACCCCTTGGAGGAACCCCAGCCTTTTCTTGAGTCAACATGGGCACCTTGGTTGGAACAC
TCTGGCTGGAGCGGGAGCCCTGCAGTCCCCTTGCTTGCCTGCTCCGGGCTCTCTGGGGTC
TCACCAGCAGGAGCATGGGTGGTCATCCTAGAGCCCCAGCCCCTTGGAGCCCCTGTCTAC
ATGTGCTTTCACGCCCTTAGCCTGCAGGGGTCAGATTTGCCATCGAAAATGATAACCTCT
ACTTTTTTCTTTTGTATTTTGATAAACACTGAAGAAGCTGGAGCTGTTAAACTTTATCTT
GGGGAAAACCTCAGAACTGGTTTATTTGGTGTCGTGGAACCTCTTACTGCTTTCAATACA
CGATTAGTAATCAACTGTTTTGTATACTTGTTTTCAGTTTTCATTTCGACAAACAAGCAC
TGTAATTACAGCTATTAGAATAAAATCTCTTAACTATTAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|11968098|ref|NP_071963.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|11968098|ref|NP_071963.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               618-720, - strand, RNAz p=0.808972

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               618-720, - strand, RNAz p=0.808972

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               49-1853, gnl|bosTau2|chr3 (8214171-8215973)
               

               
               49-1853, gnl|Hg17|chr1 (224591513-224593646)
               

               
               49-1853, gnl|Mm7|chr11 (59295067-59292956)
               


               
               138-720, gnl|bosTau2|chr16 (24148726-24149290)
               

               
               138-720, gnl|Hg17|chr1 (224591558-224592489)
               

               
               138-720, gnl|Mm7|chr1 (44128447-44129056)
               


               
               747-1751, gnl|bosTau2|chr16 (24149286-24150274)
               

               
               747-1751, gnl|Hg17|chr1 (224592485-224593558)
               

               
               747-1751, gnl|Mm7|chr1 (44129021-44130022)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               49-1853, gnl|bosTau2|chr3 (8214171-8215973)
               

               
               49-1853, gnl|Hg17|chr1 (224591513-224593646)
               

               
               49-1853, gnl|Mm7|chr11 (59295067-59292956)
               


               
               138-720, gnl|bosTau2|chr16 (24148726-24149290)
               

               
               138-720, gnl|Hg17|chr1 (224591558-224592489)
               

               
               138-720, gnl|Mm7|chr1 (44128447-44129056)
               


               
               747-1751, gnl|bosTau2|chr16 (24149286-24150274)
               

               
               747-1751, gnl|Hg17|chr1 (224592485-224593558)
               

               
               747-1751, gnl|Mm7|chr1 (44129021-44130022)

Expressed library(ies): 71 entry(ies)

More info

Expressed library(ies): 71 entry(ies)

Help | Less info


               
               cty (2.81016)
               

               
               cbr (2.68748)
               

               
               duo (1.38241)
               

               
               fhi (1.35662)
               

               
               cje (0.991408)
               

               
               cly (0.965135)
               

               
               nmm (0.929615)
               

               
               ill (0.877963)
               

               
               cga (0.837287)
               

               
               amn (0.835422)
               

               
               pgl (0.829384)
               

               
               hea (0.817996)
               

               
               ebs (0.709807)
               

               
               cut (0.679694)
               

               
               csp (0.644745)
               

               
               nca (0.547495)
               

               
               fbs (0.526039)
               

               
               pro (0.512033)
               

               
               nje (0.49776)
               

               
               bla (0.497389)
               

               
               eje (0.494169)
               

               
               nco (0.485201)
               

               
               eru (0.480192)
               

               
               cbl (0.45919)
               

               
               cli (0.458435)
               

               
               cag (0.453583)
               

               
               hyp (0.42851)
               

               
               ssp (0.406559)
               

               
               ste (0.405625)
               

               
               pla (0.401016)
               

               
               col (0.390016)
               

               
               ldo (0.38801)
               

               
               elu (0.385356)
               

               
               ese (0.379507)
               

               
               nep (0.36785)
               

               
               med (0.348756)
               

               
               rec (0.346141)
               

               
               mcp (0.341297)
               

               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               lun (0.300978)
               

               
               fat (0.294855)
               

               
               lnt (0.284616)
               

               
               cst (0.280073)
               

               
               hlv (0.278513)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               clu (0.239292)
               

               
               ecc (0.23007)
               

               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               eli (0.151814)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               nbm (0.0993246)

Expressed library(ies): 71 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (2.81016)
               

               
               cbr (2.68748)
               

               
               duo (1.38241)
               

               
               fhi (1.35662)
               

               
               cje (0.991408)
               

               
               cly (0.965135)
               

               
               nmm (0.929615)
               

               
               ill (0.877963)
               

               
               cga (0.837287)
               

               
               amn (0.835422)
               

               
               pgl (0.829384)
               

               
               hea (0.817996)
               

               
               ebs (0.709807)
               

               
               cut (0.679694)
               

               
               csp (0.644745)
               

               
               nca (0.547495)
               

               
               fbs (0.526039)
               

               
               pro (0.512033)
               

               
               nje (0.49776)
               

               
               bla (0.497389)
               

               
               eje (0.494169)
               

               
               nco (0.485201)
               

               
               eru (0.480192)
               

               
               cbl (0.45919)
               

               
               cli (0.458435)
               

               
               cag (0.453583)
               

               
               hyp (0.42851)
               

               
               ssp (0.406559)
               

               
               ste (0.405625)
               

               
               pla (0.401016)
               

               
               col (0.390016)
               

               
               ldo (0.38801)
               

               
               elu (0.385356)
               

               
               ese (0.379507)
               

               
               nep (0.36785)
               

               
               med (0.348756)
               

               
               rec (0.346141)
               

               
               mcp (0.341297)
               

               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               lun (0.300978)
               

               
               fat (0.294855)
               

               
               lnt (0.284616)
               

               
               cst (0.280073)
               

               
               hlv (0.278513)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               clu (0.239292)
               

               
               ecc (0.23007)
               

               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               eli (0.151814)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               nbm (0.0993246)

	49-1853, gnl\|bosTau2\|chr3 (8214171-8215973)
	49-1853, gnl\|Hg17\|chr1 (224591513-224593646)
	49-1853, gnl\|Mm7\|chr11 (59295067-59292956)

	138-720, gnl\|bosTau2\|chr16 (24148726-24149290)
	138-720, gnl\|Hg17\|chr1 (224591558-224592489)
	138-720, gnl\|Mm7\|chr1 (44128447-44129056)

	747-1751, gnl\|bosTau2\|chr16 (24149286-24150274)
	747-1751, gnl\|Hg17\|chr1 (224592485-224593558)
	747-1751, gnl\|Mm7\|chr1 (44129021-44130022)

	cty (2.81016)
	cbr (2.68748)
	duo (1.38241)
	fhi (1.35662)
	cje (0.991408)
	cly (0.965135)
	nmm (0.929615)
	ill (0.877963)
	cga (0.837287)
	amn (0.835422)
	pgl (0.829384)
	hea (0.817996)
	ebs (0.709807)
	cut (0.679694)
	csp (0.644745)
	nca (0.547495)
	fbs (0.526039)
	pro (0.512033)
	nje (0.49776)
	bla (0.497389)
	eje (0.494169)
	nco (0.485201)
	eru (0.480192)
	cbl (0.45919)
	cli (0.458435)
	cag (0.453583)
	hyp (0.42851)
	ssp (0.406559)
	ste (0.405625)
	pla (0.401016)
	col (0.390016)
	ldo (0.38801)
	elu (0.385356)
	ese (0.379507)
	nep (0.36785)
	med (0.348756)
	rec (0.346141)
	mcp (0.341297)
	tbr (0.308356)
	sme (0.305437)
	lun (0.300978)
	fat (0.294855)
	lnt (0.284616)
	cst (0.280073)
	hlv (0.278513)
	che (0.272628)
	fce (0.271592)
	thg (0.253582)
	tra (0.246184)
	clu (0.239292)
	ecc (0.23007)
	spc (0.226732)
	tes (0.207814)
	jej (0.197844)
	fcc (0.197785)
	fty (0.17584)
	ton (0.1755)
	sin (0.174948)
	eye (0.170503)
	cki (0.165235)
	eli (0.151814)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	pty (0.142714)
	csk (0.140746)
	ute (0.132784)
	cov (0.132153)
	sug (0.127291)
	eep (0.122564)
	nbm (0.0993246)