Ss1.1-LyN1-MLN01E120058.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TACCCAGCGAGCAGGCATGGCGGCCTCTATTACAAGGGGCTCCTGGGCTGCGGTGGGCCT GGGGCAGAGTTTTCCACCTACCCGGGCTCTGCTTCCTGCACCAGCCTCTGTCATCTGCCG GACCCTCGCGGGGTCGGGCAGACAGCAGGTCACTGGATCTTCTGAGCCCGGCGCGTTTCA GCCGCCGCCGAAACCGGTTATCGTGGACAAGCGCCGTCCCCAGCGCCCGGAAACCAGGTT CTTGAGTCCTGAGTTCATTCCTCCAAGGGGAAGAACAAATCCTCTGAAATTTCAAATAGA AAGAAAAGATATGTTAGAAAGGAGAAAAATACTCCACATTCCAGAGTTCTATGTTGGAAG CATTCTTCGTGTTACTACTGCTGACCCATATGCCAGTGCAAAAACCAGCCAGTTTCTGGG GATTTGTATCCAGAGATCAGGATCAGGACTTGGAGCTACTTTTATCCTTAGAAATACTAT TGAAGGACAAGGAGTTGAGATTTGTTTTGAGCTTTATAATCCTCGAATCCAGGAGATTCA AGTAGTCAAATTGGAGAAACGGCTGGATAATAGCTTGCTATACTTGCGAGATGCCCTTCC TGAATATAGCACTTTTGATGTGAACATGAAGCCAATAACACAAGAATTTAACCAAGAAGT TCCTGTTAATCAGCTGAAAGTAAAAATGAAGCCTAAGCCCTGGTCTAAACGCTGGGAACG TCCAAAATTTAATATTAAGGGGATCAGATTTGACCTTTGTTTAACTGAAGAGCAAATGAG AGAAGCCCAGAAGTGGAGTCAGCCATGGCTTGAGTTTGATATGATGAGGGAATATGACAC TTCAAAAATTGAAGCTGCGATATGGGATGAAATTGAAGCATCAAAAAATTCCTGATCTGA GAACGAATTTAATTGTTTGCAGAGAATGTACTGACTTGGATTTATTTGGAAGCCAATTTA ATCTCATATACATAAGGACATAGTTATTAAATCAACTAAGCATTCATCATTTTATGGGTA TTATTTTTTGAAAATTAGCACACCAGTTTATTACTTGAAAAAGAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TACCCAGCGAGCAGGCATGGCGGCCTCTATTACAAGGGGCTCCTGGGCTGCGGTGGGCCT GGGGCAGAGTTTTCCACCTACCCGGGCTCTGCTTCCTGCACCAGCCTCTGTCATCTGCCG GACCCTCGCGGGGTCGGGCAGACAGCAGGTCACTGGATCTTCTGAGCCCGGCGCGTTTCA GCCGCCGCCGAAACCGGTTATCGTGGACAAGCGCCGTCCCCAGCGCCCGGAAACCAGGTT CTTGAGTCCTGAGTTCATTCCTCCAAGGGGAAGAACAAATCCTCTGAAATTTCAAATAGA AAGAAAAGATATGTTAGAAAGGAGAAAAATACTCCACATTCCAGAGTTCTATGTTGGAAG CATTCTTCGTGTTACTACTGCTGACCCATATGCCAGTGCAAAAACCAGCCAGTTTCTGGG GATTTGTATCCAGAGATCAGGATCAGGACTTGGAGCTACTTTTATCCTTAGAAATACTAT TGAAGGACAAGGAGTTGAGATTTGTTTTGAGCTTTATAATCCTCGAATCCAGGAGATTCA AGTAGTCAAATTGGAGAAACGGCTGGATAATAGCTTGCTATACTTGCGAGATGCCCTTCC TGAATATAGCACTTTTGATGTGAACATGAAGCCAATAACACAAGAATTTAACCAAGAAGT TCCTGTTAATCAGCTGAAAGTAAAAATGAAGCCTAAGCCCTGGTCTAAACGCTGGGAACG TCCAAAATTTAATATTAAGGGGATCAGATTTGACCTTTGTTTAACTGAAGAGCAAATGAG AGAAGCCCAGAAGTGGAGTCAGCCATGGCTTGAGTTTGATATGATGAGGGAATATGACAC TTCAAAAATTGAAGCTGCGATATGGGATGAAATTGAAGCATCAAAAAATTCCTGATCTGA GAACGAATTTAATTGTTTGCAGAGAATGTACTGACTTGGATTTATTTGGAAGCCAATTTA ATCTCATATACATAAGGACATAGTTATTAAATCAACTAAGCATTCATCATTTTATGGGTA TTATTTTTTGAAAATTAGCACACCAGTTTATTACTTGAAAAAGAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 124-239, gnl|bosTau2|chr11 (30142775-30142890) | |
| 124-239, gnl|Hg17|chr2 (75785887-75786002) | |
| 124-239, gnl|Mm7|chr6 (81984232-81984117) | |
| 352-492, gnl|bosTau2|chr11 (30146459-30146599) | |
| 352-492, gnl|canFam2|chr17 (50763721-50763559) | |
| 352-492, gnl|danRer3|chr20 (27268223-27268394) | |
| 352-492, gnl|dasNov1|scaffold_29328 (9929-9764) | |
| 352-492, gnl|echTel1|scaffold_278286 (48889-49008) | |
| 352-492, gnl|fr1|chrUn (130870969-130870813) | |
| 352-492, gnl|galGal2|chr3 (108607012-108607177) | |
| 352-492, gnl|hg17|chr2 (75791286-75791448) | |
| 352-492, gnl|Hg17|chr2 (75791299-75791439) | |
| 352-492, gnl|loxAfr1|scaffold_69624 (5014-4854) | |
| 352-492, gnl|mm7|chr6 (81982500-81982339) | |
| 352-492, gnl|Mm7|chr6 (81982485-81982345) | |
| 352-492, gnl|oryCun1|scaffold_212056 (73223-73064) | |
| 352-492, gnl|panTro1|chr12 (78239961-78240123) | |
| 352-492, gnl|rheMac2|chr13 (75955270-75955432) | |
| 352-492, gnl|rn3|chr4 (116454325-116454164) | |
| 352-492, gnl|tetNig1|chr14 (3728188-3728032) | |
| 352-492, gnl|xenTro1|scaffold_226 (325429-325591) | |
| 672-1068, gnl|bosTau2|chr11 (30152557-30152950) | |
| 672-1068, gnl|Hg17|chr2 (75793843-75794248) | |
| 672-1068, gnl|Mm7|chr6 (81980576-81979825) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 124-239, gnl|bosTau2|chr11 (30142775-30142890) | |
| 124-239, gnl|Hg17|chr2 (75785887-75786002) | |
| 124-239, gnl|Mm7|chr6 (81984232-81984117) | |
| 352-492, gnl|bosTau2|chr11 (30146459-30146599) | |
| 352-492, gnl|canFam2|chr17 (50763721-50763559) | |
| 352-492, gnl|danRer3|chr20 (27268223-27268394) | |
| 352-492, gnl|dasNov1|scaffold_29328 (9929-9764) | |
| 352-492, gnl|echTel1|scaffold_278286 (48889-49008) | |
| 352-492, gnl|fr1|chrUn (130870969-130870813) | |
| 352-492, gnl|galGal2|chr3 (108607012-108607177) | |
| 352-492, gnl|hg17|chr2 (75791286-75791448) | |
| 352-492, gnl|Hg17|chr2 (75791299-75791439) | |
| 352-492, gnl|loxAfr1|scaffold_69624 (5014-4854) | |
| 352-492, gnl|mm7|chr6 (81982500-81982339) | |
| 352-492, gnl|Mm7|chr6 (81982485-81982345) | |
| 352-492, gnl|oryCun1|scaffold_212056 (73223-73064) | |
| 352-492, gnl|panTro1|chr12 (78239961-78240123) | |
| 352-492, gnl|rheMac2|chr13 (75955270-75955432) | |
| 352-492, gnl|rn3|chr4 (116454325-116454164) | |
| 352-492, gnl|tetNig1|chr14 (3728188-3728032) | |
| 352-492, gnl|xenTro1|scaffold_226 (325429-325591) | |
| 672-1068, gnl|bosTau2|chr11 (30152557-30152950) | |
| 672-1068, gnl|Hg17|chr2 (75793843-75794248) | |
| 672-1068, gnl|Mm7|chr6 (81980576-81979825) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| eye (0.511509) | |
| ski (0.440205) | |
| hea (0.408998) | |
| fbs (0.350693) | |
| vin (0.332557) | |
| cje (0.330469) | |
| sme (0.305437) | |
| spl (0.286369) | |
| ova (0.258264) | |
| eje (0.197668) | |
| aor (0.195274) | |
| col (0.195008) | |
| ldo (0.194005) | |
| fhi (0.169578) | |
| fco (0.157208) | |
| isp (0.150376) | |
| lin (0.145603) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| sug (0.127291) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eye (0.511509) | |
| ski (0.440205) | |
| hea (0.408998) | |
| fbs (0.350693) | |
| vin (0.332557) | |
| cje (0.330469) | |
| sme (0.305437) | |
| spl (0.286369) | |
| ova (0.258264) | |
| eje (0.197668) | |
| aor (0.195274) | |
| col (0.195008) | |
| ldo (0.194005) | |
| fhi (0.169578) | |
| fco (0.157208) | |
| isp (0.150376) | |
| lin (0.145603) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| sug (0.127291) |