Non-Coding RNA Search

Ss1.1-LyN1-MLN01E120089.5

Sequence:


               
               TCGCGCGCCGGGCGGGAATGTAAGATGGCGGAGTAGCGACGCGAAGTGCTTAGTACTGAG
TCTCCGGGCCGACTCAATTCGGATCTAGGCGGCAGCAGCAGGGATCGCTCAACAAAGAGA
GCCTAGGGTAGTTGGCCAAGATGCCGAATATCAAAATCTTCAGCGGCAGCTCCCACCAGG
ACCTATCCCAGAAAATTGCCGACCGCCTCGGCCTGGAACTGGGCAAGGTGGTGACTAAGA
AATTCAGCAACCAGGAGACTTGTGTGGAAATCGGCGAAAGTGTGCGTGGAGAGGATGTCT
ACATTGTTCAGAGTGGCTGTGGCGAAATCAATGACAATCTCATGGAACTTTTGATCATGA
TTAATGCCTGCAAGATTGCTTCAGCCAGTCGGGTTACTGCAGTCATCCCGTGCTTCCCTT
ATGCCCGGCAAGATAAGAAGGATAAGAGCCGGGCTCCAATCTCAGCCAAACTTGTTGCAA
ATATGCTCTCAGTAGCAGGCGCAGATCACATTATCACGATGGACCTGCATGCTTCTCAAA
TTCAGGGCTTTTTTGATATCCCAGTGGACAATTTGTATGCAGAGCCAGCTGTCCTCAAGT
GGATAAGAGAGAACATCTCTGAGTGGAGGAACTGCACCATTGTCTCACCCGATGCTGGAG
GAGCTAAGAGAGTGACTTCCATCGCAGACCGGCTGAATGTGGACTTCGCCTTGATTCACA
AAGAACGGAAGAAGGCCAATGAAGTTGACCGCATGGTGCTGGTGGGGGATGTGAAGGACC
GGGTGGCCATCCTTGTGGATGACATGGCTGACACTTGTGGGACAATCTGCCATGCAGCTG
ACAAACTCCTCTCAGCTGGAGCCACCAGAGTTTACGCAATCCTGACTCACGGAATCTTTT
CGGGCCCAGCCATTTCTCGCATTAACAATGCGTGTTTTGAAGCCGTAGTCGTCACCAATA
CCATACCTCAGGAGGATAAGATGAAGCATTGCTCCAAAATACAGGTGATCGACATCTCCA
TGATCCTTGCAGAAGCCATCAGGAGAACTCACAATGGGGAATCTGTCTCCTACCTGTTCA
GCCATGTCCCTTTATAATAGAATAACTTCTGAGGCATGGAAAAAATAAAGTGAGCCCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGCGCGCCGGGCGGGAATGTAAGATGGCGGAGTAGCGACGCGAAGTGCTTAGTACTGAG
TCTCCGGGCCGACTCAATTCGGATCTAGGCGGCAGCAGCAGGGATCGCTCAACAAAGAGA
GCCTAGGGTAGTTGGCCAAGATGCCGAATATCAAAATCTTCAGCGGCAGCTCCCACCAGG
ACCTATCCCAGAAAATTGCCGACCGCCTCGGCCTGGAACTGGGCAAGGTGGTGACTAAGA
AATTCAGCAACCAGGAGACTTGTGTGGAAATCGGCGAAAGTGTGCGTGGAGAGGATGTCT
ACATTGTTCAGAGTGGCTGTGGCGAAATCAATGACAATCTCATGGAACTTTTGATCATGA
TTAATGCCTGCAAGATTGCTTCAGCCAGTCGGGTTACTGCAGTCATCCCGTGCTTCCCTT
ATGCCCGGCAAGATAAGAAGGATAAGAGCCGGGCTCCAATCTCAGCCAAACTTGTTGCAA
ATATGCTCTCAGTAGCAGGCGCAGATCACATTATCACGATGGACCTGCATGCTTCTCAAA
TTCAGGGCTTTTTTGATATCCCAGTGGACAATTTGTATGCAGAGCCAGCTGTCCTCAAGT
GGATAAGAGAGAACATCTCTGAGTGGAGGAACTGCACCATTGTCTCACCCGATGCTGGAG
GAGCTAAGAGAGTGACTTCCATCGCAGACCGGCTGAATGTGGACTTCGCCTTGATTCACA
AAGAACGGAAGAAGGCCAATGAAGTTGACCGCATGGTGCTGGTGGGGGATGTGAAGGACC
GGGTGGCCATCCTTGTGGATGACATGGCTGACACTTGTGGGACAATCTGCCATGCAGCTG
ACAAACTCCTCTCAGCTGGAGCCACCAGAGTTTACGCAATCCTGACTCACGGAATCTTTT
CGGGCCCAGCCATTTCTCGCATTAACAATGCGTGTTTTGAAGCCGTAGTCGTCACCAATA
CCATACCTCAGGAGGATAAGATGAAGCATTGCTCCAAAATACAGGTGATCGACATCTCCA
TGATCCTTGCAGAAGCCATCAGGAGAACTCACAATGGGGAATCTGTCTCCTACCTGTTCA
GCCATGTCCCTTTATAATAGAATAACTTCTGAGGCATGGAAAAAATAAAGTGAGCCCCGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|10946854|ref|NP_067438.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|10946854|ref|NP_067438.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               774-893, + strand, RNAz p=0.719998

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               774-893, + strand, RNAz p=0.719998

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               22-1136, gnl|bosTau2|chr9 (58356397-58357510)
               

               
               22-1136, gnl|Hg17|chr9 (124992364-124993463)
               

               
               22-1136, gnl|Mm7|chr12 (55173375-55174492)
               


               
               103-1134, gnl|bosTau2|chr4 (9692692-9693725)
               

               
               103-1134, gnl|Hg17|chr7 (17840681-17839648)
               

               
               103-1134, gnl|Mm7|chr12 (32833336-32834334)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-1136, gnl|bosTau2|chr9 (58356397-58357510)
               

               
               22-1136, gnl|Hg17|chr9 (124992364-124993463)
               

               
               22-1136, gnl|Mm7|chr12 (55173375-55174492)
               


               
               103-1134, gnl|bosTau2|chr4 (9692692-9693725)
               

               
               103-1134, gnl|Hg17|chr7 (17840681-17839648)
               

               
               103-1134, gnl|Mm7|chr12 (32833336-32834334)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               pro (0.512033)
               

               
               pgl (0.35545)
               

               
               fty (0.351679)
               

               
               tes (0.207814)
               

               
               ill (0.175593)
               

               
               csp (0.161186)
               

               
               lun (0.150489)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               pgl (0.35545)
               

               
               fty (0.351679)
               

               
               tes (0.207814)
               

               
               ill (0.175593)
               

               
               csp (0.161186)
               

               
               lun (0.150489)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)

	22-1136, gnl\|bosTau2\|chr9 (58356397-58357510)
	22-1136, gnl\|Hg17\|chr9 (124992364-124993463)
	22-1136, gnl\|Mm7\|chr12 (55173375-55174492)

	103-1134, gnl\|bosTau2\|chr4 (9692692-9693725)
	103-1134, gnl\|Hg17\|chr7 (17840681-17839648)
	103-1134, gnl\|Mm7\|chr12 (32833336-32834334)

	pro (0.512033)
	pgl (0.35545)
	fty (0.351679)
	tes (0.207814)
	ill (0.175593)
	csp (0.161186)
	lun (0.150489)
	lnt (0.142308)
	nmm (0.132802)
	ret (0.128733)
	cly (0.120642)
	ebs (0.118301)