Non-Coding RNA Search

Ss1.1-LyN1-MLN01E120098.5

Sequence:


               
               TCAGCTTCTCTCAGACCCCGAGGCTGAGGATCATGGGGCCTGGAGCCCTCTTCCTGCTGC
TGTCGGGGGCCCTGGCCCTGACCGGGACCCAGGCGGGTCCCCACTCCCTGAGCTATTTCT
ACACCGCCGTGTCCCGGCCCGACCGCGGGGACTCCCGCTTCTTCATTGTCGGCTACGTGG
ACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCCCAAATGCAAAGATGGAGCCGCGGG
CGCAGTGGATACAGCAGGAGGGGCCGGAGTATTGGGATCGGGAGACACAGATCAGCAAGG
ACAACGCACAGACTTACCGAGTGGGCCTGAACAACCTGCGCGGCTACTACAACCAGAGCG
AGGCCGGGTCTCACACCTACCAGAACATGTACGGCTGCTACTTGGGACCAGACGGGCTCC
TCCTCCGCGGGTACAGTCAGTATGGCTACGACGGCGCCGATTACATCGCCCTGAACGAGG
ACCTGCGCTCCTGGACCGCGGCGGACATGGCGGCTCAGATCTCCAAGCGCAAGTGGGAGG
CGGCCGATGCGGCGGAGCAGTGGAGGAGCTACCTGCAGGGCCTGTGTGTGGAGGGGCTCC
AGAAATACCTGGAGATGGGGAAGGACACGCTGCAGCGCGCAGAGCCTCCAAAGACACATG
TGACCCGCCACCCCAGCTCTGACCTCGGGGTCACCTTGAGGTGCTGGGCCCTGGGCTTCT
ACCCTAAGGAGATCTCCCTGACCTGGCAGCGGGAGGGCCAGGACCACAGCCAGGACATGG
AGCTGGTGGAGACCAGGCCCTCAGGGGATGGGACCTTCCAGAAGTGGGCGGCCCTGGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGCTTCTCTCAGACCCCGAGGCTGAGGATCATGGGGCCTGGAGCCCTCTTCCTGCTGC
TGTCGGGGGCCCTGGCCCTGACCGGGACCCAGGCGGGTCCCCACTCCCTGAGCTATTTCT
ACACCGCCGTGTCCCGGCCCGACCGCGGGGACTCCCGCTTCTTCATTGTCGGCTACGTGG
ACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCCCAAATGCAAAGATGGAGCCGCGGG
CGCAGTGGATACAGCAGGAGGGGCCGGAGTATTGGGATCGGGAGACACAGATCAGCAAGG
ACAACGCACAGACTTACCGAGTGGGCCTGAACAACCTGCGCGGCTACTACAACCAGAGCG
AGGCCGGGTCTCACACCTACCAGAACATGTACGGCTGCTACTTGGGACCAGACGGGCTCC
TCCTCCGCGGGTACAGTCAGTATGGCTACGACGGCGCCGATTACATCGCCCTGAACGAGG
ACCTGCGCTCCTGGACCGCGGCGGACATGGCGGCTCAGATCTCCAAGCGCAAGTGGGAGG
CGGCCGATGCGGCGGAGCAGTGGAGGAGCTACCTGCAGGGCCTGTGTGTGGAGGGGCTCC
AGAAATACCTGGAGATGGGGAAGGACACGCTGCAGCGCGCAGAGCCTCCAAAGACACATG
TGACCCGCCACCCCAGCTCTGACCTCGGGGTCACCTTGAGGTGCTGGGCCCTGGGCTTCT
ACCCTAAGGAGATCTCCCTGACCTGGCAGCGGGAGGGCCAGGACCACAGCCAGGACATGG
AGCTGGTGGAGACCAGGCCCTCAGGGGATGGGACCTTCCAGAAGTGGGCGGCCCTGGTGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q68VF2_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q68VF2_PIG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               100-367, gnl|bosTau2|chr23 (21180741-21180474)
               

               
               100-367, gnl|Hg17|chr6 (30335574-30335841)
               

               
               100-367, gnl|Mm7|chr17 (33571220-33571487)
               


               
               400-650, gnl|bosTau2|chr20 (36655627-36655873)
               

               
               400-650, gnl|Hg17|chr6 (31347071-31346829)
               

               
               400-650, gnl|Mm7|chr17 (32077846-32077606)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               100-367, gnl|bosTau2|chr23 (21180741-21180474)
               

               
               100-367, gnl|Hg17|chr6 (30335574-30335841)
               

               
               100-367, gnl|Mm7|chr17 (33571220-33571487)
               


               
               400-650, gnl|bosTau2|chr20 (36655627-36655873)
               

               
               400-650, gnl|Hg17|chr6 (31347071-31346829)
               

               
               400-650, gnl|Mm7|chr17 (32077846-32077606)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cov (0.264306)
               

               
               cly (0.120642)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.264306)
               

               
               cly (0.120642)
               

               
               jca (0.11396)

	100-367, gnl\|bosTau2\|chr23 (21180741-21180474)
	100-367, gnl\|Hg17\|chr6 (30335574-30335841)
	100-367, gnl\|Mm7\|chr17 (33571220-33571487)

	400-650, gnl\|bosTau2\|chr20 (36655627-36655873)
	400-650, gnl\|Hg17\|chr6 (31347071-31346829)
	400-650, gnl\|Mm7\|chr17 (32077846-32077606)