Non-Coding RNA Search

Ss1.1-LyN1-MLN01E120104.5.5

Sequence:


               
               TTTTCCTTCGGCGCGGTGAGTAGTCGCGGGATCAGGCCGTGGCGGTGTCCTTGCCGTTTC
TGTCTCCTCCCTTGAGGCCTGTGTTCGTCTTTTCTTCCGACTTTGTCTGTTTCGTTGCAG
CCACTGAAGATCTTGGTGTCGCCATGGGCCGCCGCCCCGCCCGGTGTTACCGGTATTGCA
AGAACAAGCCGTACCCAAAGTCTCGGTTCTGCCGAGGTGTCCCTGATGCTAAGATCCGCA
TCTTTGACCTGGGGCGGAAGAAGGCAAAAGTGGATGAGTTTCCGCTCTGTGGCCACATGG
TGTCAGATGAGTACGAGCAACTCTCCTCTGAAGCTCTGGAGGCTGCTCGTATTTGTGCCA
ACAAGTACATGGTGAAAAGTTGTGGCAAAGATGGTTTTCACATCCGAGTGCGGCTACACC
CCTTCCACGTCATCCGCATCAATAAGATGCTGTCCTGTGCCGGAGCTGACAGGCTCCAGA
CAGGCATGCGTGGTGCCTTTGGAAAGCCCCAGGGCACGGTGGCCCGCGTCCACATTGGCC
AAGTCATCATGTCCATCCGCACCAAGCTGCAGAACAAGGAGCACGTGATTGAGGCCCTGC
GCAGGGCCAAGTTCAAGTTCCCTGGCCGCCAGAAGATCCACATCTCTAAGAAGTGGGGAT
TCACTAAGTTCAACGCAGATGAATTTGAAAACATGGTGGCAGAAAAGCGGCTTATCCCCG
ATGGCTGCGGGGTCAAATACATCCCTAACCGCGGCCCCCTGGACAAATGGCGGGCCCTGC
ACTCATGAGAGCCTTGGCGGCGGCGTCCCTTCCTTAACGCTGAACAATAAATCCTACTTT
CCTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTCCTTCGGCGCGGTGAGTAGTCGCGGGATCAGGCCGTGGCGGTGTCCTTGCCGTTTC
TGTCTCCTCCCTTGAGGCCTGTGTTCGTCTTTTCTTCCGACTTTGTCTGTTTCGTTGCAG
CCACTGAAGATCTTGGTGTCGCCATGGGCCGCCGCCCCGCCCGGTGTTACCGGTATTGCA
AGAACAAGCCGTACCCAAAGTCTCGGTTCTGCCGAGGTGTCCCTGATGCTAAGATCCGCA
TCTTTGACCTGGGGCGGAAGAAGGCAAAAGTGGATGAGTTTCCGCTCTGTGGCCACATGG
TGTCAGATGAGTACGAGCAACTCTCCTCTGAAGCTCTGGAGGCTGCTCGTATTTGTGCCA
ACAAGTACATGGTGAAAAGTTGTGGCAAAGATGGTTTTCACATCCGAGTGCGGCTACACC
CCTTCCACGTCATCCGCATCAATAAGATGCTGTCCTGTGCCGGAGCTGACAGGCTCCAGA
CAGGCATGCGTGGTGCCTTTGGAAAGCCCCAGGGCACGGTGGCCCGCGTCCACATTGGCC
AAGTCATCATGTCCATCCGCACCAAGCTGCAGAACAAGGAGCACGTGATTGAGGCCCTGC
GCAGGGCCAAGTTCAAGTTCCCTGGCCGCCAGAAGATCCACATCTCTAAGAAGTGGGGAT
TCACTAAGTTCAACGCAGATGAATTTGAAAACATGGTGGCAGAAAAGCGGCTTATCCCCG
ATGGCTGCGGGGTCAAATACATCCCTAACCGCGGCCCCCTGGACAAATGGCGGGCCCTGC
ACTCATGAGAGCCTTGGCGGCGGCGTCCCTTCCTTAACGCTGAACAATAAATCCTACTTT
CCTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|58760471|gb|AAW82143.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|58760471|gb|AAW82143.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               250-719, - strand, RNAz p=0.98153
               

               
               410-529, + strand, RNAz p=0.677415

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               250-719, - strand, RNAz p=0.98153
               

               
               410-529, + strand, RNAz p=0.677415

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               120-878, gnl|bosTau2|chr18 (45582993-45583743)
               

               
               120-878, gnl|Hg17|chr19 (12615757-12614991)
               

               
               120-878, gnl|Mm7|chr9 (50323829-50323061)
               


               
               121-871, gnl|bosTau2|chr16 (2455565-2456311)
               

               
               121-871, gnl|Hg17|chr19 (12615756-12615006)
               

               
               121-871, gnl|Mm7|chr2 (105405655-105404905)
               


               
               131-796, gnl|bosTau2|chr10 (27289461-27290126)
               

               
               131-796, gnl|Hg17|chr14 (46190701-46190037)
               

               
               131-796, gnl|Mm7|chr12 (64223460-64222795)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               120-878, gnl|bosTau2|chr18 (45582993-45583743)
               

               
               120-878, gnl|Hg17|chr19 (12615757-12614991)
               

               
               120-878, gnl|Mm7|chr9 (50323829-50323061)
               


               
               121-871, gnl|bosTau2|chr16 (2455565-2456311)
               

               
               121-871, gnl|Hg17|chr19 (12615756-12615006)
               

               
               121-871, gnl|Mm7|chr2 (105405655-105404905)
               


               
               131-796, gnl|bosTau2|chr10 (27289461-27290126)
               

               
               131-796, gnl|Hg17|chr14 (46190701-46190037)
               

               
               131-796, gnl|Mm7|chr12 (64223460-64222795)

Expressed library(ies): 68 entry(ies)

More info

Expressed library(ies): 68 entry(ies)

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               mcp (10.5802)
               

               
               cly (9.04814)
               

               
               eje (8.89504)
               

               
               elu (8.8632)
               

               
               eep (8.21179)
               

               
               ese (7.96964)
               

               
               fty (7.5611)
               

               
               cag (7.55972)
               

               
               nco (7.11629)
               

               
               csp (6.93101)
               

               
               eru (6.2425)
               

               
               lnt (5.97695)
               

               
               nlu (5.94211)
               

               
               ecc (5.75175)
               

               
               cov (5.55042)
               

               
               jca (5.47009)
               

               
               hlv (5.01323)
               

               
               med (4.99884)
               

               
               pty (4.99501)
               

               
               nep (4.96597)
               

               
               nje (4.81168)
               

               
               ece (4.5861)
               

               
               nmm (4.51527)
               

               
               duo (4.49283)
               

               
               fli (4.2605)
               

               
               cli (3.97311)
               

               
               nca (3.96934)
               

               
               cga (3.90734)
               

               
               ton (3.861)
               

               
               ute (3.4524)
               

               
               amn (3.34169)
               

               
               ill (3.33626)
               

               
               fce (3.2591)
               

               
               ebs (3.19413)
               

               
               fcc (2.96677)
               

               
               mas (2.94427)
               

               
               eye (2.89855)
               

               
               col (2.73011)
               

               
               nbm (2.68176)
               

               
               nms (2.13858)
               

               
               eli (2.1254)
               

               
               hyp (1.71404)
               

               
               jej (1.68167)
               

               
               fhi (1.35662)
               

               
               pgl (1.18483)
               

               
               cki (0.991408)
               

               
               cst (0.980255)
               

               
               ssp (0.948638)
               

               
               fbs (0.876732)
               

               
               cje (0.826173)
               

               
               che (0.817884)
               

               
               ldo (0.776021)
               

               
               vin (0.665115)
               

               
               ste (0.540833)
               

               
               cut (0.509771)
               

               
               fat (0.442282)
               

               
               cbr (0.255951)
               

               
               bla (0.248694)
               

               
               clu (0.239292)
               

               
               pan (0.23596)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               sin (0.174948)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               sug (0.127291)
               

               
               tra (0.123092)

Expressed library(ies): 68 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (10.5802)
               

               
               cly (9.04814)
               

               
               eje (8.89504)
               

               
               elu (8.8632)
               

               
               eep (8.21179)
               

               
               ese (7.96964)
               

               
               fty (7.5611)
               

               
               cag (7.55972)
               

               
               nco (7.11629)
               

               
               csp (6.93101)
               

               
               eru (6.2425)
               

               
               lnt (5.97695)
               

               
               nlu (5.94211)
               

               
               ecc (5.75175)
               

               
               cov (5.55042)
               

               
               jca (5.47009)
               

               
               hlv (5.01323)
               

               
               med (4.99884)
               

               
               pty (4.99501)
               

               
               nep (4.96597)
               

               
               nje (4.81168)
               

               
               ece (4.5861)
               

               
               nmm (4.51527)
               

               
               duo (4.49283)
               

               
               fli (4.2605)
               

               
               cli (3.97311)
               

               
               nca (3.96934)
               

               
               cga (3.90734)
               

               
               ton (3.861)
               

               
               ute (3.4524)
               

               
               amn (3.34169)
               

               
               ill (3.33626)
               

               
               fce (3.2591)
               

               
               ebs (3.19413)
               

               
               fcc (2.96677)
               

               
               mas (2.94427)
               

               
               eye (2.89855)
               

               
               col (2.73011)
               

               
               nbm (2.68176)
               

               
               nms (2.13858)
               

               
               eli (2.1254)
               

               
               hyp (1.71404)
               

               
               jej (1.68167)
               

               
               fhi (1.35662)
               

               
               pgl (1.18483)
               

               
               cki (0.991408)
               

               
               cst (0.980255)
               

               
               ssp (0.948638)
               

               
               fbs (0.876732)
               

               
               cje (0.826173)
               

               
               che (0.817884)
               

               
               ldo (0.776021)
               

               
               vin (0.665115)
               

               
               ste (0.540833)
               

               
               cut (0.509771)
               

               
               fat (0.442282)
               

               
               cbr (0.255951)
               

               
               bla (0.248694)
               

               
               clu (0.239292)
               

               
               pan (0.23596)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               sin (0.174948)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               sug (0.127291)
               

               
               tra (0.123092)

	250-719, - strand, RNAz p=0.98153
	410-529, + strand, RNAz p=0.677415

	120-878, gnl\|bosTau2\|chr18 (45582993-45583743)
	120-878, gnl\|Hg17\|chr19 (12615757-12614991)
	120-878, gnl\|Mm7\|chr9 (50323829-50323061)

	121-871, gnl\|bosTau2\|chr16 (2455565-2456311)
	121-871, gnl\|Hg17\|chr19 (12615756-12615006)
	121-871, gnl\|Mm7\|chr2 (105405655-105404905)

	131-796, gnl\|bosTau2\|chr10 (27289461-27290126)
	131-796, gnl\|Hg17\|chr14 (46190701-46190037)
	131-796, gnl\|Mm7\|chr12 (64223460-64222795)

	mcp (10.5802)
	cly (9.04814)
	eje (8.89504)
	elu (8.8632)
	eep (8.21179)
	ese (7.96964)
	fty (7.5611)
	cag (7.55972)
	nco (7.11629)
	csp (6.93101)
	eru (6.2425)
	lnt (5.97695)
	nlu (5.94211)
	ecc (5.75175)
	cov (5.55042)
	jca (5.47009)
	hlv (5.01323)
	med (4.99884)
	pty (4.99501)
	nep (4.96597)
	nje (4.81168)
	ece (4.5861)
	nmm (4.51527)
	duo (4.49283)
	fli (4.2605)
	cli (3.97311)
	nca (3.96934)
	cga (3.90734)
	ton (3.861)
	ute (3.4524)
	amn (3.34169)
	ill (3.33626)
	fce (3.2591)
	ebs (3.19413)
	fcc (2.96677)
	mas (2.94427)
	eye (2.89855)
	col (2.73011)
	nbm (2.68176)
	nms (2.13858)
	eli (2.1254)
	hyp (1.71404)
	jej (1.68167)
	fhi (1.35662)
	pgl (1.18483)
	cki (0.991408)
	cst (0.980255)
	ssp (0.948638)
	fbs (0.876732)
	cje (0.826173)
	che (0.817884)
	ldo (0.776021)
	vin (0.665115)
	ste (0.540833)
	cut (0.509771)
	fat (0.442282)
	cbr (0.255951)
	bla (0.248694)
	clu (0.239292)
	pan (0.23596)
	cty (0.20816)
	tes (0.207814)
	hea (0.204499)
	sin (0.174948)
	ski (0.146735)
	csk (0.140746)
	sug (0.127291)
	tra (0.123092)