Non-Coding RNA Search

Ss1.1-LyN1-MLN01F010042.5

Sequence:


               
               AGACGGAGGACTGACCGCCTGGAGCGGACCGTTCGGGCTCCCACGGTGCAGGATTGCCCG
GGATGGCGGCGGCGTGTGGGGGTGACAGGGCGCATGCCAGGAGCCCGTGAGCGCTGAGGG
ACTTGGGCCAGGTGGACGGCAGCCTGCCCGCAGGGCCACACAGGCGTTCGAGATGGAAGC
AGAAGGCTTGGATTGGCTTTTGGTCCCGCTGCAGCAGCTGGTTTCCTGGGGGGCCGCCGC
GGCCATGGTCTTCGGCGGGGTGGTCCCTTACATTCCGCAGTATAGGGACATCCGGAGGAC
TCAGAATGCGGAGGGATTCTCTACCTACGTGTGTCTGGTGCTCTTGGTGGCCAATATTTT
ACGGATACTCTTCTGGTTTGGAAGGCATTTTGAGTCACCGCTGCTCTGGCAGAGCGTCGT
CATGATCCTGACCATGCTGCTGATGCTGCGGCTGTGCACTGAGGTCCGCGTGGCCAATGA
GCTGAATGTGAAGCGCCGGTTCTTTGCAGCTGCAGATAATAAAGATGAAGAAATCAGAGT
TGCCCCCAGGCGGTCGTATCTGGGTACGTACCACGCTGCATGAGCCACCCACTAGAATGT
TCAGTCCACTTCATTCTTTGCAGCTCTCTTCCTCTCTGACTTCACTTCCATCTGTGCCTG
CATCTTGACCATGCATGTGCATCATTCACCCAGCGTGGCCACCTCTTCAGCAAGCTAACC
AACCACAGCCTGCTGTGTTCAGGCTTGAAGTAGCTCCTAGATACCTGCCTACTTTCTGTT
TGGGGGCGGAGGGTGAGGCGGGAAGGGAGGGAAGGAAGGGTTCAGAGAGGCAGAAAGAAA
GAAGAAAGAGAAATGATCAGAACACAAGTTTTGGGATTCTTTTGTTAAATTTATTCCTAA
GTATTTTATTCTTTTTGATTCTGTGGTAAATAGAATTGTTTTCTTAATTTCACTTCGGAT
TGTTCATTGTTACTTTGTAGAAATAAAATTGATTTTCACATACAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACGGAGGACTGACCGCCTGGAGCGGACCGTTCGGGCTCCCACGGTGCAGGATTGCCCG
GGATGGCGGCGGCGTGTGGGGGTGACAGGGCGCATGCCAGGAGCCCGTGAGCGCTGAGGG
ACTTGGGCCAGGTGGACGGCAGCCTGCCCGCAGGGCCACACAGGCGTTCGAGATGGAAGC
AGAAGGCTTGGATTGGCTTTTGGTCCCGCTGCAGCAGCTGGTTTCCTGGGGGGCCGCCGC
GGCCATGGTCTTCGGCGGGGTGGTCCCTTACATTCCGCAGTATAGGGACATCCGGAGGAC
TCAGAATGCGGAGGGATTCTCTACCTACGTGTGTCTGGTGCTCTTGGTGGCCAATATTTT
ACGGATACTCTTCTGGTTTGGAAGGCATTTTGAGTCACCGCTGCTCTGGCAGAGCGTCGT
CATGATCCTGACCATGCTGCTGATGCTGCGGCTGTGCACTGAGGTCCGCGTGGCCAATGA
GCTGAATGTGAAGCGCCGGTTCTTTGCAGCTGCAGATAATAAAGATGAAGAAATCAGAGT
TGCCCCCAGGCGGTCGTATCTGGGTACGTACCACGCTGCATGAGCCACCCACTAGAATGT
TCAGTCCACTTCATTCTTTGCAGCTCTCTTCCTCTCTGACTTCACTTCCATCTGTGCCTG
CATCTTGACCATGCATGTGCATCATTCACCCAGCGTGGCCACCTCTTCAGCAAGCTAACC
AACCACAGCCTGCTGTGTTCAGGCTTGAAGTAGCTCCTAGATACCTGCCTACTTTCTGTT
TGGGGGCGGAGGGTGAGGCGGGAAGGGAGGGAAGGAAGGGTTCAGAGAGGCAGAAAGAAA
GAAGAAAGAGAAATGATCAGAACACAAGTTTTGGGATTCTTTTGTTAAATTTATTCCTAA
GTATTTTATTCTTTTTGATTCTGTGGTAAATAGAATTGTTTTCTTAATTTCACTTCGGAT
TGTTCATTGTTACTTTGTAGAAATAAAATTGATTTTCACATACAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9CYA7_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9CYA7_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               505-624, - strand, RNAz p=0.824037

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               505-624, - strand, RNAz p=0.824037

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               40-377, gnl|bosTau2|chr24 (1261380-1261046)
               

               
               40-377, gnl|Hg17|chr18 (75812100-75811710)
               

               
               40-377, gnl|Mm7|chr18 (80543126-80543463)
               


               
               505-813, gnl|bosTau2|chr24 (1248543-1248239)
               

               
               505-813, gnl|Hg17|chr18 (75795015-75794698)
               


               
               857-1013, gnl|bosTau2|chr20 (31076684-31076841)
               


               
               858-1002, gnl|bosTau2|chr10 (23041580-23041435)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-377, gnl|bosTau2|chr24 (1261380-1261046)
               

               
               40-377, gnl|Hg17|chr18 (75812100-75811710)
               

               
               40-377, gnl|Mm7|chr18 (80543126-80543463)
               


               
               505-813, gnl|bosTau2|chr24 (1248543-1248239)
               

               
               505-813, gnl|Hg17|chr18 (75795015-75794698)
               


               
               857-1013, gnl|bosTau2|chr20 (31076684-31076841)
               


               
               858-1002, gnl|bosTau2|chr10 (23041580-23041435)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               cbe (0.717703)
               

               
               fco (0.471624)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               che (0.136314)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.717703)
               

               
               fco (0.471624)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               che (0.136314)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

	40-377, gnl\|bosTau2\|chr24 (1261380-1261046)
	40-377, gnl\|Hg17\|chr18 (75812100-75811710)
	40-377, gnl\|Mm7\|chr18 (80543126-80543463)

	505-813, gnl\|bosTau2\|chr24 (1248543-1248239)
	505-813, gnl\|Hg17\|chr18 (75795015-75794698)

	857-1013, gnl\|bosTau2\|chr20 (31076684-31076841)

	858-1002, gnl\|bosTau2\|chr10 (23041580-23041435)

	cbe (0.717703)
	fco (0.471624)
	fcc (0.197785)
	col (0.195008)
	fbs (0.175346)
	csp (0.161186)
	lun (0.150489)
	liv (0.146284)
	che (0.136314)
	cly (0.120642)
	pgl (0.118483)
	cty (0.10408)