Ss1.1-LyN1-MLN01F010090.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTCCCCTGAGCCGGGGCTGCGCTCCTCTAATTGGGACTCCGAGTCCGGGCTATTTCTGG CCCTGGCGCGGCTCCAAGAAGGCATCCGCATTTGCTACCAGCGGCGGCGGAGCCAGGCCG GTCCTCAGCGCCCAGCACCGTCGCTCCCGGCAGCCCGGAGCGCGCACCGCAGGCCGGCGG CCGAGCTCGCGCATCCCAGCCGTCGCTCCTCCACCTGCTCTATAGACAAGGAAAGATGAG CGAGTCGAGCTCGAAGTCTAGCCAGCCCTTGGCCTCCAAGCAGGAAAAGGACGGCACTGA GAAGCGAGGGCGGGGCAGGCCGCGCAAGCAGCCTCCGGTGAGTCCCGGGACTGCGCTGGT AGGGAGTCAGAAGGAGCCCAGCGAAGTGCCAACACCTAAAAGACCTCGGGGCCGACCAAA GGGGAGCAAAAACAAGGGCGCCGCCAAGACCCGGAAAACCACCACAGCTCCAGGGAGGAA ACCAAGGGGCAGACCCAAAAAACTGGAGAAGGAGGAAGAAGAGGGCATCTCGCAGGAGTC CTCAGAGGAGGAGCAGTGACTGCACCGCGCCGCCTGCTCCCCCGCCCGAGGAGCAGTTTC CTGCTGGGACTGGACAGCTCCGCTCCGCTCCCACTGCCCCCCCTCCCCCCAGGCCCGCGC ATCCCCGCCACCCACCTGCACCCTCACCACCACACTACACTGCACACCAGCCCGGCCCAC CAGCCCACCAGCCGCTGCAGGGCCCCGGCCCAAGAGGGAAGCAGTTTTCCTTGAAGAGAT TTCAGTTTCCGGCAACCCCTCAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTCCCCTGAGCCGGGGCTGCGCTCCTCTAATTGGGACTCCGAGTCCGGGCTATTTCTGG CCCTGGCGCGGCTCCAAGAAGGCATCCGCATTTGCTACCAGCGGCGGCGGAGCCAGGCCG GTCCTCAGCGCCCAGCACCGTCGCTCCCGGCAGCCCGGAGCGCGCACCGCAGGCCGGCGG CCGAGCTCGCGCATCCCAGCCGTCGCTCCTCCACCTGCTCTATAGACAAGGAAAGATGAG CGAGTCGAGCTCGAAGTCTAGCCAGCCCTTGGCCTCCAAGCAGGAAAAGGACGGCACTGA GAAGCGAGGGCGGGGCAGGCCGCGCAAGCAGCCTCCGGTGAGTCCCGGGACTGCGCTGGT AGGGAGTCAGAAGGAGCCCAGCGAAGTGCCAACACCTAAAAGACCTCGGGGCCGACCAAA GGGGAGCAAAAACAAGGGCGCCGCCAAGACCCGGAAAACCACCACAGCTCCAGGGAGGAA ACCAAGGGGCAGACCCAAAAAACTGGAGAAGGAGGAAGAAGAGGGCATCTCGCAGGAGTC CTCAGAGGAGGAGCAGTGACTGCACCGCGCCGCCTGCTCCCCCGCCCGAGGAGCAGTTTC CTGCTGGGACTGGACAGCTCCGCTCCGCTCCCACTGCCCCCCCTCCCCCCAGGCCCGCGC ATCCCCGCCACCCACCTGCACCCTCACCACCACACTACACTGCACACCAGCCCGGCCCAC CAGCCCACCAGCCGCTGCAGGGCCCCGGCCCAAGAGGGAAGCAGTTTTCCTTGAAGAGAT TTCAGTTTCCGGCAACCCCTCAGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 191-305, - strand, RNAz p=0.616203 | |
| 505-654, - strand, RNAz p=0.979334 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 191-305, - strand, RNAz p=0.616203 | |
| 505-654, - strand, RNAz p=0.979334 |
| Aligned organism(s): 92 entry(ies) | More info |
| Aligned organism(s): 92 entry(ies) | Help | Less info |
| 191-370, gnl|bosTau2|chr23 (7982013-7982190) | |
| 191-370, gnl|canFam2|chr12 (6535758-6535614) | |
| 191-370, gnl|canFam2|chr12 (6535758-6535614) | |
| 191-370, gnl|canFam2|chr12 (6535583-6535727) | |
| 191-370, gnl|canFam2|chr12 (6535586-6535758) | |
| 191-370, gnl|dasNov1|scaffold_161752 (209-356) | |
| 191-370, gnl|dasNov1|scaffold_161752 (212-356) | |
| 191-370, gnl|dasNov1|scaffold_161752 (386-243) | |
| 191-370, gnl|dasNov1|scaffold_161752 (380-212) | |
| 191-370, gnl|echTel1|scaffold_296277 (708-566) | |
| 191-370, gnl|echTel1|scaffold_296277 (547-705) | |
| 191-370, gnl|echTel1|scaffold_81440 (1005-1123) | |
| 191-370, gnl|echTel1|scaffold_81440 (1150-1010) | |
| 191-370, gnl|hg17|chr12 (109330674-109330821) | |
| 191-370, gnl|hg17|chr13 (22606374-22606518) | |
| 191-370, gnl|hg17|chr2 (74557094-74557238) | |
| 191-370, gnl|Hg17|chr6 (34316491-34316670) | |
| 191-370, gnl|hg17|chrX (26525760-26525935) | |
| 191-370, gnl|loxAfr1|scaffold_161302 (126-274) | |
| 191-370, gnl|loxAfr1|scaffold_161302 (129-274) | |
| 191-370, gnl|loxAfr1|scaffold_161302 (302-160) | |
| 191-370, gnl|loxAfr1|scaffold_161302 (300-129) | |
| 191-370, gnl|mm7|chr11 (120872069-120871923) | |
| 191-370, gnl|mm7|chr11 (120872066-120871923) | |
| 191-370, gnl|mm7|chr11 (120871900-120872068) | |
| 191-370, gnl|mm7|chr11 (120871899-120872066) | |
| 191-370, gnl|Mm7|chr17 (25745151-25745334) | |
| 191-370, gnl|monDom2|scaffold_42 (13225594-13225716) | |
| 191-370, gnl|monDom2|scaffold_42 (13225590-13225716) | |
| 191-370, gnl|monDom2|scaffold_42 (13225734-13225590) | |
| 191-370, gnl|oryCun1|scaffold_203290 (21136-21028) | |
| 191-370, gnl|oryCun1|scaffold_203290 (21135-21028) | |
| 191-370, gnl|oryCun1|scaffold_203290 (20997-21134) | |
| 191-370, gnl|oryCun1|scaffold_203290 (20992-21135) | |
| 191-370, gnl|panTro1|chr10 (111909648-111909795) | |
| 191-370, gnl|panTro1|chr12 (76960053-76960197) | |
| 191-370, gnl|panTro1|chr14 (21791186-21791330) | |
| 191-370, gnl|panTro1|chr3 (59394173-59393998) | |
| 191-370, gnl|rheMac2|chr17 (3608735-3608879) | |
| 191-370, gnl|rheMac2|chr4 (33941456-33941309) | |
| 191-370, gnl|rheMac2|chrX (24604342-24604198) | |
| 191-370, gnl|rheMac2|chrX (24604167-24604342) | |
| 191-370, gnl|rn3|chr15 (57075945-57076077) | |
| 191-370, gnl|rn3|chr20 (5769414-5769268) | |
| 191-370, gnl|rn3|chr20 (5769411-5769268) | |
| 191-370, gnl|rn3|chr20 (5769268-5769411) | |
| 505-712, gnl|bosTau2|chr23 (7985974-7986163) | |
| 505-712, gnl|canFam2|chr12 (6539935-6539713) | |
| 505-712, gnl|canFam2|chr12 (6539940-6539713) | |
| 505-712, gnl|canFam2|chr12 (6539711-6539932) | |
| 505-712, gnl|canFam2|chr12 (6540592-6539714) | |
| 505-712, gnl|canFam2|chr12 (6539694-6539934) | |
| 505-712, gnl|echTel1|scaffold_159820 (905-681) | |
| 505-712, gnl|echTel1|scaffold_159820 (676-902) | |
| 505-712, gnl|echTel1|scaffold_159820 (646-905) | |
| 505-712, gnl|echTel1|scaffold_81440 (645-869) | |
| 505-712, gnl|echTel1|scaffold_81440 (113-868) | |
| 505-712, gnl|hg17|chr10 (76705351-76706184) | |
| 505-712, gnl|hg17|chr12 (109330295-109330537) | |
| 505-712, gnl|hg17|chr13 (22606653-22606865) | |
| 505-712, gnl|hg17|chr2 (74556733-74556954) | |
| 505-712, gnl|hg17|chr6 (34320569-34320830) | |
| 505-712, gnl|Hg17|chr6 (34320585-34320814) | |
| 505-712, gnl|mm7|chr11 (120872390-120872206) | |
| 505-712, gnl|mm7|chr11 (120872399-120872206) | |
| 505-712, gnl|mm7|chr11 (120872204-120872395) | |
| 505-712, gnl|mm7|chr11 (120872996-120872207) | |
| 505-712, gnl|mm7|chr17 (25748056-25748258) | |
| 505-712, gnl|Mm7|chr17 (25748068-25748254) | |
| 505-712, gnl|monDom2|scaffold_42 (13218996-13219269) | |
| 505-712, gnl|monDom2|scaffold_42 (13218992-13219269) | |
| 505-712, gnl|monDom2|scaffold_42 (13219289-13218996) | |
| 505-712, gnl|oryCun1|scaffold_203290 (21507-21272) | |
| 505-712, gnl|oryCun1|scaffold_203290 (21511-21272) | |
| 505-712, gnl|oryCun1|scaffold_203290 (21270-21504) | |
| 505-712, gnl|oryCun1|scaffold_203290 (22168-21273) | |
| 505-712, gnl|oryCun1|scaffold_203290 (21249-21505) | |
| 505-712, gnl|panTro1|chr10 (111909269-111909511) | |
| 505-712, gnl|panTro1|chr14 (21791465-21791678) | |
| 505-712, gnl|panTro1|chr3 (59393609-59393858) | |
| 505-712, gnl|panTro1|chr5 (34772644-34772906) | |
| 505-712, gnl|panTro1|chr8 (77967041-77967875) | |
| 505-712, gnl|rheMac2|chr17 (3609013-3609245) | |
| 505-712, gnl|rheMac2|chr4 (33945931-33945689) | |
| 505-712, gnl|rheMac2|chr4 (33945670-33945931) | |
| 505-712, gnl|rheMac2|chr9 (61723240-61722408) | |
| 505-712, gnl|rheMac2|chrX (24604737-24604482) | |
| 505-712, gnl|rn3|chr15 (57076195-57076389) | |
| 505-712, gnl|rn3|chr20 (5772626-5772445) | |
| 505-712, gnl|rn3|chr20 (5772630-5772445) | |
| 505-712, gnl|rn3|chr20 (5772430-5772624) | |
| 505-712, gnl|rn3|chrX (52405441-52406207) |
| Aligned organism(s): 92 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 191-370, gnl|bosTau2|chr23 (7982013-7982190) | |
| 191-370, gnl|canFam2|chr12 (6535758-6535614) | |
| 191-370, gnl|canFam2|chr12 (6535758-6535614) | |
| 191-370, gnl|canFam2|chr12 (6535583-6535727) | |
| 191-370, gnl|canFam2|chr12 (6535586-6535758) | |
| 191-370, gnl|dasNov1|scaffold_161752 (209-356) | |
| 191-370, gnl|dasNov1|scaffold_161752 (212-356) | |
| 191-370, gnl|dasNov1|scaffold_161752 (386-243) | |
| 191-370, gnl|dasNov1|scaffold_161752 (380-212) | |
| 191-370, gnl|echTel1|scaffold_296277 (708-566) | |
| 191-370, gnl|echTel1|scaffold_296277 (547-705) | |
| 191-370, gnl|echTel1|scaffold_81440 (1005-1123) | |
| 191-370, gnl|echTel1|scaffold_81440 (1150-1010) | |
| 191-370, gnl|hg17|chr12 (109330674-109330821) | |
| 191-370, gnl|hg17|chr13 (22606374-22606518) | |
| 191-370, gnl|hg17|chr2 (74557094-74557238) | |
| 191-370, gnl|Hg17|chr6 (34316491-34316670) | |
| 191-370, gnl|hg17|chrX (26525760-26525935) | |
| 191-370, gnl|loxAfr1|scaffold_161302 (126-274) | |
| 191-370, gnl|loxAfr1|scaffold_161302 (129-274) | |
| 191-370, gnl|loxAfr1|scaffold_161302 (302-160) | |
| 191-370, gnl|loxAfr1|scaffold_161302 (300-129) | |
| 191-370, gnl|mm7|chr11 (120872069-120871923) | |
| 191-370, gnl|mm7|chr11 (120872066-120871923) | |
| 191-370, gnl|mm7|chr11 (120871900-120872068) | |
| 191-370, gnl|mm7|chr11 (120871899-120872066) | |
| 191-370, gnl|Mm7|chr17 (25745151-25745334) | |
| 191-370, gnl|monDom2|scaffold_42 (13225594-13225716) | |
| 191-370, gnl|monDom2|scaffold_42 (13225590-13225716) | |
| 191-370, gnl|monDom2|scaffold_42 (13225734-13225590) | |
| 191-370, gnl|oryCun1|scaffold_203290 (21136-21028) | |
| 191-370, gnl|oryCun1|scaffold_203290 (21135-21028) | |
| 191-370, gnl|oryCun1|scaffold_203290 (20997-21134) | |
| 191-370, gnl|oryCun1|scaffold_203290 (20992-21135) | |
| 191-370, gnl|panTro1|chr10 (111909648-111909795) | |
| 191-370, gnl|panTro1|chr12 (76960053-76960197) | |
| 191-370, gnl|panTro1|chr14 (21791186-21791330) | |
| 191-370, gnl|panTro1|chr3 (59394173-59393998) | |
| 191-370, gnl|rheMac2|chr17 (3608735-3608879) | |
| 191-370, gnl|rheMac2|chr4 (33941456-33941309) | |
| 191-370, gnl|rheMac2|chrX (24604342-24604198) | |
| 191-370, gnl|rheMac2|chrX (24604167-24604342) | |
| 191-370, gnl|rn3|chr15 (57075945-57076077) | |
| 191-370, gnl|rn3|chr20 (5769414-5769268) | |
| 191-370, gnl|rn3|chr20 (5769411-5769268) | |
| 191-370, gnl|rn3|chr20 (5769268-5769411) | |
| 505-712, gnl|bosTau2|chr23 (7985974-7986163) | |
| 505-712, gnl|canFam2|chr12 (6539935-6539713) | |
| 505-712, gnl|canFam2|chr12 (6539940-6539713) | |
| 505-712, gnl|canFam2|chr12 (6539711-6539932) | |
| 505-712, gnl|canFam2|chr12 (6540592-6539714) | |
| 505-712, gnl|canFam2|chr12 (6539694-6539934) | |
| 505-712, gnl|echTel1|scaffold_159820 (905-681) | |
| 505-712, gnl|echTel1|scaffold_159820 (676-902) | |
| 505-712, gnl|echTel1|scaffold_159820 (646-905) | |
| 505-712, gnl|echTel1|scaffold_81440 (645-869) | |
| 505-712, gnl|echTel1|scaffold_81440 (113-868) | |
| 505-712, gnl|hg17|chr10 (76705351-76706184) | |
| 505-712, gnl|hg17|chr12 (109330295-109330537) | |
| 505-712, gnl|hg17|chr13 (22606653-22606865) | |
| 505-712, gnl|hg17|chr2 (74556733-74556954) | |
| 505-712, gnl|hg17|chr6 (34320569-34320830) | |
| 505-712, gnl|Hg17|chr6 (34320585-34320814) | |
| 505-712, gnl|mm7|chr11 (120872390-120872206) | |
| 505-712, gnl|mm7|chr11 (120872399-120872206) | |
| 505-712, gnl|mm7|chr11 (120872204-120872395) | |
| 505-712, gnl|mm7|chr11 (120872996-120872207) | |
| 505-712, gnl|mm7|chr17 (25748056-25748258) | |
| 505-712, gnl|Mm7|chr17 (25748068-25748254) | |
| 505-712, gnl|monDom2|scaffold_42 (13218996-13219269) | |
| 505-712, gnl|monDom2|scaffold_42 (13218992-13219269) | |
| 505-712, gnl|monDom2|scaffold_42 (13219289-13218996) | |
| 505-712, gnl|oryCun1|scaffold_203290 (21507-21272) | |
| 505-712, gnl|oryCun1|scaffold_203290 (21511-21272) | |
| 505-712, gnl|oryCun1|scaffold_203290 (21270-21504) | |
| 505-712, gnl|oryCun1|scaffold_203290 (22168-21273) | |
| 505-712, gnl|oryCun1|scaffold_203290 (21249-21505) | |
| 505-712, gnl|panTro1|chr10 (111909269-111909511) | |
| 505-712, gnl|panTro1|chr14 (21791465-21791678) | |
| 505-712, gnl|panTro1|chr3 (59393609-59393858) | |
| 505-712, gnl|panTro1|chr5 (34772644-34772906) | |
| 505-712, gnl|panTro1|chr8 (77967041-77967875) | |
| 505-712, gnl|rheMac2|chr17 (3609013-3609245) | |
| 505-712, gnl|rheMac2|chr4 (33945931-33945689) | |
| 505-712, gnl|rheMac2|chr4 (33945670-33945931) | |
| 505-712, gnl|rheMac2|chr9 (61723240-61722408) | |
| 505-712, gnl|rheMac2|chrX (24604737-24604482) | |
| 505-712, gnl|rn3|chr15 (57076195-57076389) | |
| 505-712, gnl|rn3|chr20 (5772626-5772445) | |
| 505-712, gnl|rn3|chr20 (5772630-5772445) | |
| 505-712, gnl|rn3|chr20 (5772430-5772624) | |
| 505-712, gnl|rn3|chrX (52405441-52406207) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) |