Non-Coding RNA Search

Ss1.1-LyN1-MLN01F010104.5

Sequence:


               
               TGTGAGACTTTTCAGGGACCAGGACCTTTTCCCTTCTCTGACCAACCCTGGATTAAGGCT
GTACCAATATGTGGCGTATTGTGGAGTTTATTGTAAAGCCAGTCTGTTTAAAGAGACTAG
TCACTGAGAGTACCAGAAAGACCTGGTTAGCAGATTTTTTTCATCTGTCACAGGCCCTAC
CAGCCCTAGGCTCAGTAATCTAGTGGCAGGACATAAAGTGACACTCAGAATTCCCCAGAG
GAACTGTAAACCTGGTCAGTATTAAGCCCTCCTTTGATTGTCTTGCCCTGCCGACTCCCA
GTCTTGGTTTCCTGTCCTTTGAGCTGTCTCCGTTGTCTTTCCGTTTTCTCTGCGTGTGCT
CTGCCATCTCCCGTATTTACCTCCCACCTCTCTCTGTAGCAGTGTTGGTCTTTTCGGGCA
CGTCTGTGACATTGATGCTTTTCGGGGAAATGTTTCTTAATTGTCACATATTTTTAACGT
GCATTTCCTGAGTGCTGATTTCATACTTTTGGTGGGATCTCCATTGCTCCTACTCATCTG
GGCTAAACAGGGGCCCCATGGGTTTCCGAGGAAAGAAGAGGACTCTGTGACCCCTTCACA
GAAGGACTGAGGGCCCTGCAGGAGTGAAAACTGGCCTGGTGGGTAGACAGAGGGGTGGAA
GCATCAAAACCCGGCTCTGACTTTGGGAGGCCCAGTTTGAAATATCCCCCACACCCAGCA
CCCCTGCCACCCCAGGGACCCAGCTCAGGTCTTTCCTGTCCGTAAGATGGGTTTTTAAAC
TGTGTAGTCTTGGCTGGGAGCCTGGGCACCCGAGGACTCCGCCAGCCAGCACACTTTGGA
AGAAGATGTGCAAGGAGCAGAAGAGCCATTTGGACTTGAACTCTGGGGAGGCAGAAACTC
CCCCACCCTCTGCTCTCTGTTGGCTGATGTGACATCTGTTTGTAATGTACACGAGTGTAT
TTCCACACTTGCCTTTACAGCGATTTTTGGCCTTGATGAACCAGAAGTCAGACCTTCATG
CTGCACTGTCAGAGCCATTTTCCCTACTTTGTAATAAAAATCAAGGAGGCAGTTTGTGGG
TCTTTACCACCCAAGGCTAAGGAACAGCAGCCACAGTATGTCTGGAGACCCTGGGGCACC
CCTCCTGTCACCATGTGATCACCTTTCCTTCCCCTTGTTGGCCTTCAGTTGTCTTGGGCT
GGTCTTAGGTGCTTCTGTGTCCATAGTCCTGTGTATAGGGAAGGGTCCAGGCCGGGGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGAGACTTTTCAGGGACCAGGACCTTTTCCCTTCTCTGACCAACCCTGGATTAAGGCT
GTACCAATATGTGGCGTATTGTGGAGTTTATTGTAAAGCCAGTCTGTTTAAAGAGACTAG
TCACTGAGAGTACCAGAAAGACCTGGTTAGCAGATTTTTTTCATCTGTCACAGGCCCTAC
CAGCCCTAGGCTCAGTAATCTAGTGGCAGGACATAAAGTGACACTCAGAATTCCCCAGAG
GAACTGTAAACCTGGTCAGTATTAAGCCCTCCTTTGATTGTCTTGCCCTGCCGACTCCCA
GTCTTGGTTTCCTGTCCTTTGAGCTGTCTCCGTTGTCTTTCCGTTTTCTCTGCGTGTGCT
CTGCCATCTCCCGTATTTACCTCCCACCTCTCTCTGTAGCAGTGTTGGTCTTTTCGGGCA
CGTCTGTGACATTGATGCTTTTCGGGGAAATGTTTCTTAATTGTCACATATTTTTAACGT
GCATTTCCTGAGTGCTGATTTCATACTTTTGGTGGGATCTCCATTGCTCCTACTCATCTG
GGCTAAACAGGGGCCCCATGGGTTTCCGAGGAAAGAAGAGGACTCTGTGACCCCTTCACA
GAAGGACTGAGGGCCCTGCAGGAGTGAAAACTGGCCTGGTGGGTAGACAGAGGGGTGGAA
GCATCAAAACCCGGCTCTGACTTTGGGAGGCCCAGTTTGAAATATCCCCCACACCCAGCA
CCCCTGCCACCCCAGGGACCCAGCTCAGGTCTTTCCTGTCCGTAAGATGGGTTTTTAAAC
TGTGTAGTCTTGGCTGGGAGCCTGGGCACCCGAGGACTCCGCCAGCCAGCACACTTTGGA
AGAAGATGTGCAAGGAGCAGAAGAGCCATTTGGACTTGAACTCTGGGGAGGCAGAAACTC
CCCCACCCTCTGCTCTCTGTTGGCTGATGTGACATCTGTTTGTAATGTACACGAGTGTAT
TTCCACACTTGCCTTTACAGCGATTTTTGGCCTTGATGAACCAGAAGTCAGACCTTCATG
CTGCACTGTCAGAGCCATTTTCCCTACTTTGTAATAAAAATCAAGGAGGCAGTTTGTGGG
TCTTTACCACCCAAGGCTAAGGAACAGCAGCCACAGTATGTCTGGAGACCCTGGGGCACC
CCTCCTGTCACCATGTGATCACCTTTCCTTCCCCTTGTTGGCCTTCAGTTGTCTTGGGCT
GGTCTTAGGTGCTTCTGTGTCCATAGTCCTGTGTATAGGGAAGGGTCCAGGCCGGGGAGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               529-646, - strand, RNAz p=0.999992

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               529-646, - strand, RNAz p=0.999992

Similar Transcript(s): 1 entry(ies)

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Similar Transcript(s): 1 entry(ies)

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               529-646, CJ016083 full-length enriched swine cDNA library, adult mesenteric 
(dbj|CJ016083.1|), blast E-value=0, identity=100%

Similar Transcript(s): 1 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               529-646, CJ016083 full-length enriched swine cDNA library, adult mesenteric 
(dbj|CJ016083.1|), blast E-value=0, identity=100%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               8-1260, gnl|bosTau2|chr19 (41468120-41469362)
               

               
               8-1260, gnl|Hg17|chr17 (42372119-42373359)
               

               
               8-1260, gnl|Mm7|chr11 (103787343-103786251)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-1260, gnl|bosTau2|chr19 (41468120-41469362)
               

               
               8-1260, gnl|Hg17|chr17 (42372119-42373359)
               

               
               8-1260, gnl|Mm7|chr11 (103787343-103786251)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               cki (0.165235)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	8-1260, gnl\|bosTau2\|chr19 (41468120-41469362)
	8-1260, gnl\|Hg17\|chr17 (42372119-42373359)
	8-1260, gnl\|Mm7\|chr11 (103787343-103786251)

	cki (0.165235)
	cag (0.151194)
	lnt (0.142308)
	hlv (0.139256)
	che (0.136314)
	pla (0.133672)
	eep (0.122564)
	cty (0.10408)
	jej (0.0989218)